BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780488|ref|YP_003064901.1|
adenosylmethionine--8-amino-7-oxononanoate transaminase [Candidatus
Liberibacter asiaticus str. psy62]
(423 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780488|ref|YP_003064901.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 423
Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/423 (100%), Positives = 423/423 (100%)
Query: 1 MNHLHSNYPIWHPFVQHFCNPTFKKIIKTEGSYLIDENHDKIIDAISSWWVITHGHRHPI 60
MNHLHSNYPIWHPFVQHFCNPTFKKIIKTEGSYLIDENHDKIIDAISSWWVITHGHRHPI
Sbjct: 1 MNHLHSNYPIWHPFVQHFCNPTFKKIIKTEGSYLIDENHDKIIDAISSWWVITHGHRHPI 60
Query: 61 IMNAIRSASENYDQIIFSEYTHEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMA 120
IMNAIRSASENYDQIIFSEYTHEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMA
Sbjct: 61 IMNAIRSASENYDQIIFSEYTHEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMA 120
Query: 121 LGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQ 180
LGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQ
Sbjct: 121 LGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQ 180
Query: 181 KTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTG 240
KTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTG
Sbjct: 181 KTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTG 240
Query: 241 WGRTGKIFACNHADITPDILCLSKGITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSS 300
WGRTGKIFACNHADITPDILCLSKGITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSS
Sbjct: 241 WGRTGKIFACNHADITPDILCLSKGITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSS 300
Query: 301 YTANPIACAAALANLQIWEKEPVIERIKNLERMHADRLSLLKSNKKFVNIRQMGTIVALD 360
YTANPIACAAALANLQIWEKEPVIERIKNLERMHADRLSLLKSNKKFVNIRQMGTIVALD
Sbjct: 301 YTANPIACAAALANLQIWEKEPVIERIKNLERMHADRLSLLKSNKKFVNIRQMGTIVALD 360
Query: 361 FNVQNKGYFFDKNAKLKNFFREKKILIRPLGHIMYLMPPYCITATDLDHIYNTINEAVDF 420
FNVQNKGYFFDKNAKLKNFFREKKILIRPLGHIMYLMPPYCITATDLDHIYNTINEAVDF
Sbjct: 361 FNVQNKGYFFDKNAKLKNFFREKKILIRPLGHIMYLMPPYCITATDLDHIYNTINEAVDF 420
Query: 421 LEL 423
LEL
Sbjct: 421 LEL 423
>gi|254780432|ref|YP_003064845.1| acetylornithine transaminase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 392
Score = 136 bits (342), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 109/384 (28%), Positives = 183/384 (47%), Gaps = 31/384 (8%)
Query: 28 KTEGSYLIDENHDKIIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEYTHEPAEQ 87
K +G++L EN +D S V + GH HP ++ ++S SE + + Y E
Sbjct: 20 KGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVS-NLYQSTQQEI 78
Query: 88 LARLLIKIAPLGLQYVFFSDSGSTSIEVALKMALGF-FNNNNMPRNKIVVMEHGYHGDTI 146
A LI VFF++SG+ S+E A+K A + + + +IV E +HG T+
Sbjct: 79 FANHLIH--STFADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTL 136
Query: 147 GSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQKIAAFLVEPLILG 206
++S + + + P + + F L L+ S AA L+EP I G
Sbjct: 137 ATISAGGKLQYLEGFGPKIEGFDQAKFCD-------LQSLKNQISNDT-AAILIEP-IQG 187
Query: 207 AGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPDILCLSKGI 266
GG++ L++ +I D LLI DEV TG+GRTGK+FA A++ PDI+ ++KG+
Sbjct: 188 EGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIMTIAKGM 247
Query: 267 TGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEKEPVIER 326
GG P+ A L + E+ H S+Y N +A L I + + +E
Sbjct: 248 -GGGFPIGACLATNEVAACMNQGS------HGSTYGGNVLAMVLGEKVLNIIQSDGFLEN 300
Query: 327 IKNLERMHADRLSLLKSN--KKFVNIRQMGTIVALDFNVQNKGYFFDKNAKLKNFFREKK 384
+ N+ ++ + L+ +K+ F+ +R G ++ L K F A L FR++
Sbjct: 301 VINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGL------KTVF--SPALLAAKFRDEC 352
Query: 385 ILIRPLG-HIMYLMPPYCITATDL 407
+L P +++ ++PP ITA ++
Sbjct: 353 LLTAPSSDNVVRILPPLTITAEEI 376
>gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 199
Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 8 YPIWHPFVQHFCNPTFKKIIKTEGSYLIDENHDKIIDAISSWW 50
Y + F++ + N KK + + GSY ID+ ++ +I +
Sbjct: 135 YKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSY 177
>gi|254781091|ref|YP_003065504.1| putative pyridoxal-phosphate-dependent aminotransferase protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 383
Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 218 LKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPDILCLSKGITGGALPLAATL 277
+KE +I K+Y +L+ D V G+I + +I D L +S G + A +
Sbjct: 163 IKEIAQIVKEYQGILVVDAVQA----AGRI-PLSIEEIKADFLIISSHKLGAPVGAGALV 217
Query: 278 CSEEIF 283
E+I
Sbjct: 218 FREDIL 223
>gi|254781079|ref|YP_003065492.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62]
Length = 266
Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 17/124 (13%)
Query: 93 IKIAPL-GLQYVFFSDSGSTSIEVALKMALGFFNNNNMPR-----NKIVVMEH--GYHGD 144
I + P GL+Y+ + I + + + LG+ + + + N+I + G
Sbjct: 53 IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
Query: 145 TIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQKIAAFLVEPLI 204
S +S G++N + FD++ K ++D H K+ AFL + L+
Sbjct: 113 LNHSAFISSLGSYNEKLSIVFFDIDYF---------KQINDNFGHPVGDKVIAFLSDQLV 163
Query: 205 LGAG 208
+ G
Sbjct: 164 VVFG 167
>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1187
Score = 24.3 bits (51), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 120 ALGFFNNNNMPRNKIVV-MEHGYHGDTIGSMSVSMRGAFNNSYE 162
A FF+++N+ I+V EHG G + S+ + G F++ E
Sbjct: 494 AQSFFDSSNIEEGAIIVHAEHGI-GRFVRLYSIEVSGTFHDCLE 536
>gi|254780456|ref|YP_003064869.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 576
Score = 23.9 bits (50), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 178 EEQKTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEV 237
EE T DL ++C T+ I L + ++ G++ +EFM +Y + + DEV
Sbjct: 16 EESFTKKDLAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFMG-KGQYTPIKVGDEV 74
Query: 238 MTGWGRTGKIFA 249
RT F
Sbjct: 75 EVYVERTENSFG 86
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 285,076
Number of Sequences: 1233
Number of extensions: 11858
Number of successful extensions: 27
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 7
length of query: 423
length of database: 328,796
effective HSP length: 76
effective length of query: 347
effective length of database: 235,088
effective search space: 81575536
effective search space used: 81575536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 40 (20.0 bits)