HHsearch alignment for GI: 254780489 and conserved domain: cd00825
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=99.69 E-value=3.4e-16 Score=125.71 Aligned_cols=244 Identities=21% Similarity=0.242 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCE----EEEEEEEECC---------------------CCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999986430132223442----5884310023---------------------68874322112100238633
Q gi|254780489|r 54 LTDIAIQAGDIALRNANIKKDSISL----TLLATSTPDH---------------------LLPPSSPLITHRLGLMQSGA 108 (325)
Q Consensus 54 ~~~la~~Aa~~aL~~a~~~~~dId~----ii~~s~t~d~---------------------~~P~~a~~v~~~Lg~~~~~~ 108 (325)
T Consensus 11 vsl~al~aa~eAl~dAGl~~~~~~~~r~GV~~Gs~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~G-p~ 89 (332)
T cd00825 11 VSILGFEAAERAIADAGLSREYQKNPIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTKAMFPGASGQIATPLGIHG-PA 89 (332)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-CC
T ss_conf 99999999999999759993445788889999968831888985312322368642466553489999999968989-63
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCC-----------C------C-CCCCCCCCCCCCCEEEEEEC
Q ss_conf 342101231012567657887438-850588620122444-----------4------6-22244343254420011220
Q gi|254780489|r 109 IDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLSRR-----------I------N-LEDKDTAIIFGDAAGAVVLA 169 (325)
Q Consensus 109 ~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S~~-----------~------d-~~d~~~~~lfGDgA~A~il~ 169 (325)
T Consensus 90 ~tv~taCaS~l~Ai~~A~~~i~~G~~d~aivgg~~~~~~~~~~~~~~~~~~~~~~~~~rpFd~~~~G~v~gEGa~~lvLe 169 (332)
T cd00825 90 YDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDCEFDAMGALSTPEKASRTFDAAADGFVFGDGAGALVVE 169 (332)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHHH
T ss_conf 03135416889999999999983899874620312117989999999727789898878887889972002654035540
Q ss_pred CCCCCCC--CCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 5765444--53113553213677652783069866765445565523224514543432010036789889974012001
Q gi|254780489|r 170 PSPLKDK--SGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQD 247 (325)
Q Consensus 170 ~~~~~~~--~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~d 247 (325)
T Consensus 170 ~~~~A~~rg~~i~a~i-~g~~~~~dg----------------~~~~~~~p~--------~~~~~~ai~~Al~~agi~p~~ 224 (332)
T cd00825 170 ELEHALARGAHIYAEI-VGTAATIDG----------------AGMGAFAPS--------AEGLARAAKEALAVAGLTVWD 224 (332)
T ss_pred HHHHHHHCCCCEEEEE-CCCEEECCC----------------CCCCCCCCC--------HHHHHHHHHHHHHHCCCCCCC
T ss_conf 0888875289620331-134587789----------------878887979--------999999999999984988200
Q ss_pred CCEEEECCCCCHHHH-----HHHHHCCCCHHHHHH-HHHHCCCCCCCHHHHHHHH---HHHHCCCCC-------------
Q ss_conf 224630565413899-----999971978657002-1854093300059999999---998067899-------------
Q gi|254780489|r 248 INRFIPHQANSRIIQ-----KVCEKIGLSKRIMVN-SLKDFGNSSSASIPLSLSL---ENQRKPFQK------------- 305 (325)
Q Consensus 248 id~~i~Hq~~~~~~~-----~~~~~lgi~~~~~~~-~l~~~GN~~sAsi~~~L~~---~~~~g~i~~------------- 305 (325)
T Consensus 225 I~yI~ahgtGt~~~D~~E~~Al~~~fg~-~~~~v~S~Ks~~GH~~~AsG~~~li~~~lal~~~~ipp~~n~~~~~~~~~~ 303 (332)
T cd00825 225 IDYLVAHGTGTPIGDVKELKLLRSEFGD-KSPAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIHIEELDEAGLN 303 (332)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 1479917786855559999999998578-998210574564455265699999999999863960899998999833256
Q ss_pred ---------CCEEEEEEECCCCCCCCCC
Q ss_conf ---------9899999861551020101
Q gi|254780489|r 306 ---------GEKILTISCRRGNDRGIYC 324 (325)
Q Consensus 306 ---------Gd~vll~~~G~G~s~ga~l 324 (325)
T Consensus 304 ~~~~~~~~~~~~~~~nsfGfGG~Na~vv 331 (332)
T cd00825 304 IVTETTPRELRTALLNGFGLGGTNATLV 331 (332)
T ss_pred CCCCCCCCCCCEEEEECCCCCCEEEEEE
T ss_conf 6777768999899996702681406886