HHsearch alignment for GI: 254780489 and conserved domain: cd00829

>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=99.73  E-value=1.1e-16  Score=128.84  Aligned_cols=202  Identities=18%  Similarity=0.191  Sum_probs=140.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             98879999999999986430132223442588431002368874322112100238633342101231012567657887
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYI  129 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i  129 (325)
T Consensus        12 ~~~s~~eL~~~a~~~Al~dagi~~~~ID~v~~g~~~~~~~~~~~~~~~a~~~G~~~~~~~~v~~~c~Sg~~ai~~Aa~~I   91 (375)
T cd00829          12 SDRSPLELAAEAARAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAEYLGLLGKPATRVEAAGASGSAAVRAAAAAI   91 (375)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCHHHHCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             99699999999999999983919899499999912875534769999999829999865886898869999999999999


Q ss_pred             HCC-CCEEEEEEECCCCCCCCCC---------------------------------------------------------
Q ss_conf             438-8505886201224444622---------------------------------------------------------
Q gi|254780489|r  130 NSH-QKPVLIIAANLLSRRINLE---------------------------------------------------------  151 (325)
Q Consensus       130 ~~g-~~~vLVv~~e~~S~~~d~~---------------------------------------------------------  151 (325)
T Consensus        92 ~~G~~~~vl~~G~Es~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a~~~~~~~g~~re~~~~~a~~~~~~A~~  171 (375)
T cd00829          92 ASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLTPPALYALAARRYMHRYGTTREDLAKVAVKNHRNAAR  171 (375)
T ss_pred             HCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf             77999989999875167787655544456772033320244665789999999999999797999999999999986442


Q ss_pred             CCC-------------------------CCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCC
Q ss_conf             244-------------------------3432544200112205765444531135532136776527830698667654
Q gi|254780489|r  152 DKD-------------------------TAIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAG  206 (325)
Q Consensus       152 d~~-------------------------~~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~  206 (325)
T Consensus       172 np~A~~~~~~t~e~~~~~~~i~~Pl~~~~~~~~~DGAaa~vl~s~~~A~~~~~~p~~i~g~~~~~-----------~~~~  240 (375)
T cd00829         172 NPYAQFRKPITVEDVLNSRMIADPLRLLDCCPVSDGAAAVVLASEERARELTDRPVWILGVGAAS-----------DTPS  240 (375)
T ss_pred             CCCCCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCCCCEEEEEECHHHHHHCCCCCEEEEEEEEEE-----------CCCC
T ss_conf             86120258858999823476446621431576666405899963999987699937999999995-----------2654


Q ss_pred             CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHH
Q ss_conf             4556552322451454343201003678988997401200122463056541389999997197865
Q gi|254780489|r  207 TNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKR  273 (325)
Q Consensus       207 ~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~  273 (325)
T Consensus       241 ~~~~~~~-----------~~~~~~~~A~~~al~~aGl~~~DiD~~Ei~eaFa~~~l~~~e~lGl~~~  296 (375)
T cd00829         241 LSERDDF-----------LSLDAARLAARRAYKMAGITPDDIDVAELYDCFTIAELLALEDLGFCEK  296 (375)
T ss_pred             CCCCCCC-----------CCCHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHHHHHHHHCCCCCC
T ss_conf             3567852-----------2232599999999998199978765642015766999999998099977