HHsearch alignment for GI: 254780489 and conserved domain: cd00829
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=99.73 E-value=1.1e-16 Score=128.84 Aligned_cols=202 Identities=18% Similarity=0.191 Sum_probs=140.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 98879999999999986430132223442588431002368874322112100238633342101231012567657887
Q gi|254780489|r 50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYI 129 (325)
Q Consensus 50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i 129 (325)
T Consensus 12 ~~~s~~eL~~~a~~~Al~dagi~~~~ID~v~~g~~~~~~~~~~~~~~~a~~~G~~~~~~~~v~~~c~Sg~~ai~~Aa~~I 91 (375)
T cd00829 12 SDRSPLELAAEAARAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAEYLGLLGKPATRVEAAGASGSAAVRAAAAAI 91 (375)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 99699999999999999983919899499999912875534769999999829999865886898869999999999999
Q ss_pred HCC-CCEEEEEEECCCCCCCCCC---------------------------------------------------------
Q ss_conf 438-8505886201224444622---------------------------------------------------------
Q gi|254780489|r 130 NSH-QKPVLIIAANLLSRRINLE--------------------------------------------------------- 151 (325)
Q Consensus 130 ~~g-~~~vLVv~~e~~S~~~d~~--------------------------------------------------------- 151 (325)
T Consensus 92 ~~G~~~~vl~~G~Es~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a~~~~~~~g~~re~~~~~a~~~~~~A~~ 171 (375)
T cd00829 92 ASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLTPPALYALAARRYMHRYGTTREDLAKVAVKNHRNAAR 171 (375)
T ss_pred HCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 77999989999875167787655544456772033320244665789999999999999797999999999999986442
Q ss_pred CCC-------------------------CCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCC
Q ss_conf 244-------------------------3432544200112205765444531135532136776527830698667654
Q gi|254780489|r 152 DKD-------------------------TAIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAG 206 (325)
Q Consensus 152 d~~-------------------------~~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~ 206 (325)
T Consensus 172 np~A~~~~~~t~e~~~~~~~i~~Pl~~~~~~~~~DGAaa~vl~s~~~A~~~~~~p~~i~g~~~~~-----------~~~~ 240 (375)
T cd00829 172 NPYAQFRKPITVEDVLNSRMIADPLRLLDCCPVSDGAAAVVLASEERARELTDRPVWILGVGAAS-----------DTPS 240 (375)
T ss_pred CCCCCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCCCCEEEEEECHHHHHHCCCCCEEEEEEEEEE-----------CCCC
T ss_conf 86120258858999823476446621431576666405899963999987699937999999995-----------2654
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHH
Q ss_conf 4556552322451454343201003678988997401200122463056541389999997197865
Q gi|254780489|r 207 TNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKR 273 (325)
Q Consensus 207 ~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~ 273 (325)
T Consensus 241 ~~~~~~~-----------~~~~~~~~A~~~al~~aGl~~~DiD~~Ei~eaFa~~~l~~~e~lGl~~~ 296 (375)
T cd00829 241 LSERDDF-----------LSLDAARLAARRAYKMAGITPDDIDVAELYDCFTIAELLALEDLGFCEK 296 (375)
T ss_pred CCCCCCC-----------CCCHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHHHHHHHHCCCCCC
T ss_conf 3567852-----------2232599999999998199978765642015766999999998099977