HHsearch alignment for GI: 254780489 and conserved domain: cd00833
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=99.30 E-value=4.3e-11 Score=92.39 Aligned_cols=222 Identities=18% Similarity=0.206 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCE----EEEEEEEECC--------------CCC-----CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999986430132223442----5884310023--------------688-----743221121002386333421
Q gi|254780489|r 56 DIAIQAGDIALRNANIKKDSISL----TLLATSTPDH--------------LLP-----PSSPLITHRLGLMQSGAIDLT 112 (325)
Q Consensus 56 ~la~~Aa~~aL~~a~~~~~dId~----ii~~s~t~d~--------------~~P-----~~a~~v~~~Lg~~~~~~~di~ 112 (325)
T Consensus 89 rl~L~~a~eAl~dAG~~~~~~~~~r~GV~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~~~~G-p~~~v~ 167 (421)
T cd00833 89 RLLLEVAWEALEDAGYSPESLAGSRTGVFVGASSSDYLELLARDPDEIDAYAATGTSRAFLANRISYFFDLRG-PSLTVD 167 (421)
T ss_pred HHHHHHHHHHHHHCCCCHHHCCCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCCC
T ss_conf 9999999999975289834648863499966666647889742756578530135431179999999968999-600335
Q ss_pred CCCCCCHHHHHHHHHHHHCCC-CEEEEEEECC-CCC----------CC------CCCC-CCCCCCCCCCEEEEEECCCCC
Q ss_conf 012310125676578874388-5058862012-244----------44------6222-443432544200112205765
Q gi|254780489|r 113 GACAGFLYALVMADSYINSHQ-KPVLIIAANL-LSR----------RI------NLED-KDTAIIFGDAAGAVVLAPSPL 173 (325)
Q Consensus 113 ~~C~g~l~aL~~A~~~i~~g~-~~vLVv~~e~-~S~----------~~------d~~d-~~~~~lfGDgA~A~il~~~~~ 173 (325)
T Consensus 168 tACaSsl~Ai~~A~~~i~~G~~d~ai~Gg~~~~~~~~~~~~~~~~~~ls~~~~~rpFD~~~~G~v~gEGa~~lvLe~~~~ 247 (421)
T cd00833 168 TACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLSPDGRCRPFDADADGYVRGEGVGVVVLKRLSD 247 (421)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEECEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHH
T ss_conf 36279999999999998579943544120003158689999863578689998567888999865557513543687899
Q ss_pred CC--CCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 44--4531135532136776527830698667654455655232245145434320100367898899740120012246
Q gi|254780489|r 174 KD--KSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRF 251 (325)
Q Consensus 174 ~~--~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~ 251 (325)
T Consensus 248 A~~~g~~I~a~i-~G~g~~~dg----------------~~~~~~~P~~--------~~~~~~~~~al~~agi~~~~i~yi 302 (421)
T cd00833 248 ALRDGDRIYAVI-RGSAVNQDG----------------RTKGITAPSG--------EAQAALIRRAYARAGVDPSDIDYV 302 (421)
T ss_pred HHHCCCCEEEEE-EEEEECCCC----------------CCCCCCCCCH--------HHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 987699479999-899980689----------------7778888756--------689999999999729994412089
Q ss_pred EECCCCCHH-----HHHHHHHCCCCH---HHHH--HHHHHCCCCCCCHHHHHHHH---HHHHCCC
Q ss_conf 305654138-----999999719786---5700--21854093300059999999---9980678
Q gi|254780489|r 252 IPHQANSRI-----IQKVCEKIGLSK---RIMV--NSLKDFGNSSSASIPLSLSL---ENQRKPF 303 (325)
Q Consensus 252 i~Hq~~~~~-----~~~~~~~lgi~~---~~~~--~~l~~~GN~~sAsi~~~L~~---~~~~g~i 303 (325)
T Consensus 303 eaHgtgT~~gD~~E~~ai~~~f~~~~~~~~~~~v~S~Ks~~GH~~~AaG~~~~i~~~lal~~~~i 367 (421)
T cd00833 303 EAHGTGTPLGDPIEVEALAKVFGGSRSADQPLLIGSVKSNIGHLEAAAGLAGLIKVVLALEHGVI 367 (421)
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 97447686669999999999961257777863023543453433576799999999999855982