Query         gi|254780489|ref|YP_003064902.1| 3-oxoacyl-(acyl carrier protein) synthase II [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 325
No_of_seqs    142 out of 3736
Neff          8.2 
Searched_HMMs 39220
Date          Sun May 29 17:24:05 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780489.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR00747 fabH 3-oxoacyl-(acyl 100.0       0       0  642.3  19.4  321    5-325     2-327 (329)
  2 COG0332 FabH 3-oxoacyl-[acyl-c 100.0       0       0  578.3  22.9  318    4-325     2-320 (323)
  3 PRK05963 3-oxoacyl-(acyl carri 100.0       0       0  567.9  24.5  321    4-325     3-325 (327)
  4 PRK09352 3-oxoacyl-(acyl carri 100.0       0       0  566.9  24.8  314    5-325     3-317 (319)
  5 PRK07204 3-oxoacyl-(acyl carri 100.0       0       0  558.2  23.8  321    2-325     1-327 (329)
  6 PRK07515 3-oxoacyl-(acyl carri 100.0       0       0  560.7  20.5  316    4-325     1-369 (372)
  7 PRK12879 3-oxoacyl-(acyl carri 100.0       0       0  552.5  24.5  322    2-325     1-323 (326)
  8 CHL00203 fabH 3-oxoacyl-acyl-c 100.0       0       0  550.5  24.8  318    6-325     1-323 (327)
  9 cd00830 KAS_III Ketoacyl-acyl  100.0       0       0  545.9  26.1  319    5-325     1-320 (320)
 10 PRK12880 3-oxoacyl-(acyl carri 100.0       0       0  548.6  22.4  314    4-325     6-336 (353)
 11 PRK06816 3-oxoacyl-(acyl carri 100.0       0       0  543.7  22.0  321    5-325     2-375 (378)
 12 PRK06840 hypothetical protein; 100.0       0       0  534.7  23.2  321    2-325     1-333 (337)
 13 PRK09258 3-oxoacyl-(acyl carri 100.0       0       0  534.0  21.4  311    6-325     1-337 (339)
 14 PRK04262 hypothetical protein; 100.0       0       0  459.9  22.9  301    5-325     2-306 (346)
 15 cd00827 init_cond_enzymes "ini 100.0       0       0  453.2  22.5  317    5-325     1-324 (324)
 16 cd00831 CHS_like Chalcone and  100.0       0       0  445.4  22.0  314    5-325     1-361 (361)
 17 COG3425 PksG 3-hydroxy-3-methy 100.0 2.1E-42       0  297.0  18.8  300    4-323     1-306 (377)
 18 COG3424 BcsA Predicted naringe 100.0 4.7E-41 1.4E-45  288.2  18.4  311    6-325     2-350 (356)
 19 cd00327 cond_enzymes Condensin 100.0 5.7E-39 1.4E-43  274.6  12.7  239   49-325     2-254 (254)
 20 TIGR00748 HMG_CoA_syn_Arc hydr 100.0 3.5E-32 8.9E-37  230.2  11.7  300    6-324     2-306 (347)
 21 TIGR01835 HMG-CoA-S_prok hydro 100.0 5.2E-30 1.3E-34  216.0  10.3  297    7-320     2-339 (412)
 22 pfam00195 Chal_sti_synt_N Chal  99.9   2E-27 5.2E-32  199.1   9.8  166    6-172    17-228 (228)
 23 TIGR01833 HMG-CoA-S_euk hydrox  99.9 6.7E-22 1.7E-26  163.0  14.0  307    2-324     1-375 (461)
 24 pfam08541 ACP_syn_III_C 3-Oxoa  99.9 3.6E-23 9.1E-28  171.3   6.3   88  238-325     1-88  (90)
 25 KOG1393 consensus               99.9 2.5E-20 6.3E-25  152.7  15.4  302    5-325    11-374 (462)
 26 pfam01154 HMG_CoA_synt_N Hydro  99.9 4.9E-21 1.3E-25  157.3  11.3  163    5-171     1-169 (171)
 27 pfam08392 FAE1_CUT1_RppA FAE1/  99.8 6.3E-18 1.6E-22  137.0  12.4  171    3-174     6-209 (290)
 28 cd00829 SCP-x_thiolase Thiolas  99.7 1.1E-16 2.9E-21  128.8  13.1  202   50-273    12-296 (375)
 29 cd00825 decarbox_cond_enzymes   99.7 3.4E-16 8.7E-21  125.7  11.2  244   54-324    11-331 (332)
 30 pfam02797 Chal_sti_synt_C Chal  99.7 1.8E-16 4.6E-21  127.5   8.6  117  209-325    21-147 (151)
 31 pfam08545 ACP_syn_III 3-Oxoacy  99.6   2E-16 5.1E-21  127.2   5.8   79  109-188     1-80  (80)
 32 PRK12578 acetyl-CoA acetyltran  99.6   2E-14 5.2E-19  114.1  15.4  226   50-299    17-348 (385)
 33 cd00751 thiolase Thiolase are   99.6 6.5E-15 1.7E-19  117.3  12.4   98   50-147    18-117 (386)
 34 PRK06064 acetyl-CoA acetyltran  99.6 6.6E-15 1.7E-19  117.3  12.4  201   50-272    18-302 (389)
 35 PRK06059 lipid-transfer protei  99.6 4.5E-14 1.1E-18  111.9  15.8  257   51-322    20-393 (399)
 36 PRK08256 lipid-transfer protei  99.6 3.8E-14 9.6E-19  112.4  14.9  197   50-273    18-309 (391)
 37 PRK08235 acetyl-CoA acetyltran  99.6 1.7E-14 4.2E-19  114.7  12.5   98   50-147    22-121 (393)
 38 PRK06333 3-oxoacyl-(acyl carri  99.6 3.9E-14   1E-18  112.2  13.7  274    1-303     1-372 (424)
 39 cd00834 KAS_I_II Beta-ketoacyl  99.6 3.6E-14 9.1E-19  112.5  13.4  274    4-304     1-361 (406)
 40 PRK06364 consensus              99.6 5.9E-14 1.5E-18  111.1  13.8  202   50-273    21-308 (389)
 41 TIGR02845 spore_V_AD stage V s  99.6 1.4E-14 3.7E-19  115.1   9.8  259    3-319     7-311 (331)
 42 PRK07800 consensus              99.6 4.8E-14 1.2E-18  111.7  12.5   98   50-147    22-121 (393)
 43 PRK07516 acetyl-CoA acetyltran  99.6 1.2E-13 3.2E-18  109.0  14.4   96   50-146    18-117 (389)
 44 PRK06157 acetyl-CoA acetyltran  99.6 3.2E-13 8.3E-18  106.2  16.2  229   50-300    23-360 (400)
 45 PRK06289 acetyl-CoA acetyltran  99.6 2.1E-13 5.4E-18  107.4  15.0  101   45-145    17-121 (408)
 46 PRK07314 3-oxoacyl-(acyl carri  99.6 1.3E-13 3.2E-18  108.9  13.8  274    3-303     1-361 (411)
 47 PRK08722 3-oxoacyl-(acyl carri  99.6 1.1E-13 2.7E-18  109.4  13.3  265    1-292     1-350 (414)
 48 PRK08313 acetyl-CoA acetyltran  99.6 1.2E-12   3E-17  102.6  17.9  221    1-272     1-304 (391)
 49 PRK05790 acetyl-CoA acetyltran  99.6 9.1E-14 2.3E-18  109.8  11.7   98   50-147    22-121 (393)
 50 PRK06845 consensus              99.5 1.4E-13 3.5E-18  108.7  12.6   98   50-147    22-122 (392)
 51 PRK06363 consensus              99.5 1.4E-13 3.6E-18  108.6  12.3  200   51-272    19-302 (387)
 52 PRK06065 acetyl-CoA acetyltran  99.5 7.2E-13 1.8E-17  104.0  15.4  227   50-300    26-357 (393)
 53 cd00826 nondecarbox_cond_enzym  99.5 2.1E-13 5.3E-18  107.5  12.6   96   51-146    20-117 (393)
 54 PRK08768 consensus              99.5 3.2E-13 8.2E-18  106.3  13.1  274    2-303     1-362 (411)
 55 PRK06158 thiolase; Provisional  99.5   9E-13 2.3E-17  103.3  15.1  196   50-272    24-298 (384)
 56 PRK06365 acetyl-CoA acetyltran  99.5 2.2E-12 5.6E-17  100.8  16.8  241   50-298    19-371 (415)
 57 PRK07801 acetyl-CoA acetyltran  99.5 5.1E-13 1.3E-17  105.0  12.7   98   50-147    22-122 (382)
 58 PRK07025 consensus              99.5 4.2E-13 1.1E-17  105.5  11.4   98   50-147    22-121 (393)
 59 PRK06366 acetyl-CoA acetyltran  99.5 2.6E-13 6.7E-18  106.8  10.4   98   50-147    22-121 (388)
 60 PRK06689 consensus              99.5 4.9E-13 1.2E-17  105.1  11.7   98   50-147    22-121 (391)
 61 PRK06954 acetyl-CoA acetyltran  99.5 7.3E-13 1.9E-17  103.9  12.5   98   50-147    27-126 (397)
 62 PTZ00050 3-oxoacyl-acyl carrie  99.5 1.5E-12 3.8E-17  101.9  14.1  275    3-304    60-425 (477)
 63 TIGR03150 fabF 3-oxoacyl-[acyl  99.5 1.4E-12 3.6E-17  102.1  13.5  273    4-303     1-360 (407)
 64 PRK07491 consensus              99.5 1.1E-12 2.7E-17  102.8  12.6   98   50-147    23-122 (392)
 65 PRK05656 acetyl-CoA acetyltran  99.5 1.4E-12 3.7E-17  102.0  13.1   98   50-147    22-121 (392)
 66 PRK06025 acetyl-CoA acetyltran  99.5 2.6E-12 6.6E-17  100.3  14.4   97   50-146    25-124 (417)
 67 PRK05952 3-oxoacyl-(acyl carri  99.5 4.6E-12 1.2E-16   98.7  15.6  277    5-319     3-371 (379)
 68 PRK07103 polyketide beta-ketoa  99.5   2E-12 5.1E-17  101.1  13.6  269    5-303     8-367 (415)
 69 PRK06501 3-oxoacyl-(acyl carri  99.5 4.6E-12 1.2E-16   98.7  15.4  292    1-319     8-414 (425)
 70 PRK08041 consensus              99.5 2.1E-12 5.3E-17  101.0  13.2   98   50-147    22-121 (391)
 71 PRK08371 consensus              99.5 1.7E-12 4.4E-17  101.5  12.8  199   51-273    19-304 (388)
 72 PRK08242 acetyl-CoA acetyltran  99.5 3.9E-12   1E-16   99.2  14.5   98   50-147    24-124 (402)
 73 PRK07124 consensus              99.4 1.2E-12 3.1E-17  102.5  10.8   98   50-147    22-121 (402)
 74 PRK07851 acetyl-CoA acetyltran  99.4 3.7E-12 9.4E-17   99.3  13.0   98   50-147    23-123 (405)
 75 PRK07855 lipid-transfer protei  99.4 3.5E-11   9E-16   92.9  17.5  263    1-325     1-385 (386)
 76 PRK09051 beta-ketothiolase; Pr  99.4 4.3E-12 1.1E-16   98.9  12.5   98   50-147    23-123 (394)
 77 PRK06504 acetyl-CoA acetyltran  99.4 1.2E-11   3E-16   96.0  14.2   98   50-147    22-122 (390)
 78 PRK06445 acetyl-CoA acetyltran  99.4 3.5E-12 8.8E-17   99.5  11.4   98   50-147    28-128 (394)
 79 smart00825 PKS_KS Beta-ketoacy  99.4 1.5E-12 3.8E-17  101.9   9.2  222   56-303    89-367 (424)
 80 PRK07910 3-oxoacyl-(acyl carri  99.4 1.9E-11 4.8E-16   94.7  14.9  263    3-292    11-355 (418)
 81 PRK07108 acetyl-CoA acetyltran  99.4 7.1E-12 1.8E-16   97.5  12.7   98   50-147    23-123 (392)
 82 PRK06205 acetyl-CoA acetyltran  99.4 1.1E-11 2.9E-16   96.2  13.5   98   50-147    22-121 (404)
 83 PRK08131 acetyl-CoA acetyltran  99.4 3.8E-12 9.6E-17   99.3  11.0   98   50-147    22-122 (401)
 84 cd00828 elong_cond_enzymes "el  99.4 1.7E-11 4.4E-16   95.0  14.4  240   54-324    72-406 (407)
 85 PRK07850 acetyl-CoA acetyltran  99.4 5.7E-12 1.4E-16   98.1  11.7   98   50-147    22-122 (387)
 86 PRK09052 acetyl-CoA acetyltran  99.4 7.2E-12 1.8E-16   97.4  12.0   98   50-147    27-128 (399)
 87 PRK08963 fadI 3-ketoacyl-CoA t  99.4 1.7E-11 4.2E-16   95.1  13.1   97   50-146    33-131 (436)
 88 PRK08142 acetyl-CoA acetyltran  99.4 2.6E-11 6.5E-16   93.8  13.9  223   50-300    21-348 (388)
 89 cd00832 CLF Chain-length facto  99.4 1.1E-11 2.9E-16   96.2  12.0  269    4-304     1-354 (399)
 90 PRK08234 consensus              99.4 1.1E-11 2.9E-16   96.1  12.0   98   50-147    22-123 (400)
 91 PRK09185 3-oxoacyl-(acyl carri  99.4 6.1E-11 1.6E-15   91.4  15.1  254    1-289     1-327 (395)
 92 PRK06633 acetyl-CoA acetyltran  99.4 8.2E-11 2.1E-15   90.5  15.1   97   50-146    23-121 (392)
 93 PRK07967 3-oxoacyl-(acyl carri  99.3 7.2E-11 1.8E-15   90.9  14.6  254    5-290     3-338 (406)
 94 PRK09116 3-oxoacyl-(acyl carri  99.3 1.9E-11 4.8E-16   94.7  11.4  208   54-292     4-274 (336)
 95 PRK08947 fadA 3-ketoacyl-CoA t  99.3   2E-11   5E-16   94.6  11.2   98   50-147    23-124 (387)
 96 PRK08170 acetyl-CoA acetyltran  99.3 2.3E-11 5.8E-16   94.2  11.0   98   50-147    23-122 (426)
 97 PRK09268 acetyl-CoA acetyltran  99.3 3.8E-11 9.8E-16   92.7  11.7   98   50-147    27-126 (428)
 98 cd00833 PKS polyketide synthas  99.3 4.3E-11 1.1E-15   92.4  11.3  222   56-303    89-367 (421)
 99 PRK06147 3-oxoacyl-(acyl carri  99.3 4.1E-10   1E-14   86.0  14.8  245   53-325    63-338 (346)
100 PRK07661 acetyl-CoA acetyltran  99.3 1.7E-10 4.3E-15   88.5  12.8   97   50-147    17-116 (384)
101 PRK07937 lipid-transfer protei  99.3 3.7E-10 9.4E-15   86.3  13.8  225   53-310    23-331 (352)
102 PRK08439 3-oxoacyl-(acyl carri  99.3 6.5E-10 1.7E-14   84.6  15.0  268    5-304     3-357 (405)
103 PRK13359 beta-ketoadipyl CoA t  99.2 7.7E-11   2E-15   90.7  10.0   98   50-147    22-123 (400)
104 PRK09050 beta-ketoadipyl CoA t  99.2   4E-10   1E-14   86.0  13.2   98   50-147    22-123 (401)
105 pfam07451 SpoVAD Stage V sporu  99.2 9.2E-10 2.4E-14   83.7  13.3  272    3-319     8-309 (329)
106 PRK06690 acetyl-CoA acetyltran  99.2 4.3E-10 1.1E-14   85.9  10.8   93   50-147    21-115 (361)
107 PRK12404 stage V sporulation p  99.2   1E-09 2.7E-14   83.3  12.6  272    3-319    11-312 (334)
108 PRK06066 acetyl-CoA acetyltran  99.2 1.7E-09 4.2E-14   82.0  13.5  240   50-317    19-369 (375)
109 PRK08304 stage V sporulation p  99.2 1.1E-09 2.8E-14   83.1  12.6  274    3-319    13-314 (336)
110 COG3321 Polyketide synthase mo  99.1 2.3E-09 5.9E-14   81.1  11.6  223   57-305    94-372 (1061)
111 PRK06519 3-oxoacyl-(acyl carri  99.0 2.9E-08 7.3E-13   73.9  14.8  266    1-305     3-361 (397)
112 TIGR01930 AcCoA-C-Actrans acet  98.9 1.7E-09 4.3E-14   81.9   6.1   98   50-147    20-121 (447)
113 COG0304 FabB 3-oxoacyl-(acyl-c  98.9 2.7E-08 6.9E-13   74.1  10.7  212   52-289    69-344 (412)
114 pfam00108 Thiolase_N Thiolase,  98.9 3.4E-09 8.6E-14   80.0   6.0   98   50-147    22-121 (264)
115 PRK08257 acetyl-CoA acetyltran  98.8 3.4E-07 8.8E-12   66.9  12.9   94   51-145    26-121 (502)
116 KOG1390 consensus               98.7 1.9E-07 4.9E-12   68.5  10.6  259   51-320    27-389 (396)
117 pfam00109 ketoacyl-synt Beta-k  98.7 4.8E-08 1.2E-12   72.4   6.7  164    4-171     2-240 (243)
118 KOG1391 consensus               98.7 1.4E-06 3.5E-11   63.0  13.6   94   50-146    24-123 (396)
119 KOG1389 consensus               98.6   4E-07   1E-11   66.4   9.8  269   50-320    57-417 (435)
120 KOG1394 consensus               98.6   7E-07 1.8E-11   64.8   9.4  254    4-285    24-365 (440)
121 KOG1406 consensus               98.5 6.2E-08 1.6E-12   71.7   3.7   91   53-146    28-119 (408)
122 KOG1202 consensus               98.1   2E-05 5.2E-10   55.3   8.9  215   54-297    87-353 (2376)
123 COG0183 PaaJ Acetyl-CoA acetyl  98.1 4.2E-06 1.1E-10   59.8   4.8   95   54-148    27-126 (392)
124 pfam08540 HMG_CoA_synt_C Hydro  98.0 5.6E-05 1.4E-09   52.4   9.2  107  218-324    31-198 (282)
125 KOG1392 consensus               97.4 0.00039 9.9E-09   46.9   5.8  111   36-146    44-160 (465)
126 pfam00195 Chal_sti_synt_N Chal  96.7  0.0087 2.2E-07   38.1   7.0   92  221-315    96-192 (228)
127 PRK06504 acetyl-CoA acetyltran  96.5  0.0093 2.4E-07   37.9   6.0   69  232-300   292-365 (390)
128 PRK06845 consensus              96.4   0.015 3.8E-07   36.6   6.7   58  232-289   294-353 (392)
129 TIGR01930 AcCoA-C-Actrans acet  96.3   0.002   5E-08   42.3   1.9  132  158-318   283-442 (447)
130 PRK13359 beta-ketoadipyl CoA t  96.1   0.024   6E-07   35.3   6.5   70  231-300   299-375 (400)
131 cd00831 CHS_like Chalcone and   96.1   0.029 7.5E-07   34.6   7.0   11   63-73     42-52  (361)
132 PRK06954 acetyl-CoA acetyltran  96.1   0.016 4.2E-07   36.3   5.5   70  231-300   298-372 (397)
133 TIGR02813 omega_3_PfaA polyket  96.1   0.007 1.8E-07   38.7   3.6  171   57-257   141-346 (2773)
134 PRK06445 acetyl-CoA acetyltran  96.0   0.025 6.5E-07   35.0   6.5   69  232-300   296-369 (394)
135 PRK07491 consensus              96.0   0.011 2.8E-07   37.4   4.6   69  232-300   294-367 (392)
136 PRK08041 consensus              96.0   0.026 6.6E-07   35.0   6.4   70  231-300   293-367 (391)
137 PRK05790 acetyl-CoA acetyltran  96.0   0.015 3.7E-07   36.6   5.0   69  232-300   295-368 (393)
138 PRK07800 consensus              96.0   0.014 3.6E-07   36.7   4.9   83  231-317   294-381 (393)
139 PRK07025 consensus              95.9  0.0092 2.3E-07   37.9   3.5   70  231-300   294-368 (393)
140 PRK08234 consensus              95.8   0.014 3.6E-07   36.7   4.2   70  231-300   300-374 (400)
141 PRK06366 acetyl-CoA acetyltran  95.7   0.024 6.2E-07   35.2   5.3   75  232-306   289-368 (388)
142 pfam08392 FAE1_CUT1_RppA FAE1/  95.7   0.057 1.5E-06   32.7   7.1   83  230-315    87-173 (290)
143 PRK08242 acetyl-CoA acetyltran  95.6   0.046 1.2E-06   33.3   6.4   70  231-300   303-377 (402)
144 pfam02803 Thiolase_C Thiolase,  95.6   0.037 9.4E-07   34.0   5.8   70  231-300    25-99  (123)
145 PRK06205 acetyl-CoA acetyltran  95.6   0.024 6.1E-07   35.2   4.9   70  231-300   301-378 (404)
146 PRK05656 acetyl-CoA acetyltran  95.6   0.024 6.1E-07   35.2   4.7   70  231-300   294-368 (392)
147 PRK08131 acetyl-CoA acetyltran  95.5   0.031 7.8E-07   34.5   5.1   70  231-300   299-375 (401)
148 pfam02803 Thiolase_C Thiolase,  95.5   0.032 8.2E-07   34.4   5.2   92   58-170    24-123 (123)
149 PRK09051 beta-ketothiolase; Pr  95.5   0.021 5.3E-07   35.6   4.2   70  231-300   295-369 (394)
150 PRK09050 beta-ketoadipyl CoA t  95.5   0.034 8.6E-07   34.2   5.2   70  231-300   300-376 (401)
151 PRK07851 acetyl-CoA acetyltran  95.4   0.023 5.8E-07   35.3   4.3  114  158-300   260-379 (405)
152 PRK08947 fadA 3-ketoacyl-CoA t  95.2   0.036 9.1E-07   34.1   4.7   70  231-300   285-362 (387)
153 PRK07801 acetyl-CoA acetyltran  95.2   0.038 9.7E-07   33.9   4.8   70  231-300   283-357 (382)
154 PRK06633 acetyl-CoA acetyltran  95.1   0.056 1.4E-06   32.8   5.5   76  231-306   293-373 (392)
155 PRK12879 3-oxoacyl-(acyl carri  95.1   0.064 1.6E-06   32.4   5.7   13  262-274   233-245 (326)
156 PRK06816 3-oxoacyl-(acyl carri  95.1    0.12   3E-06   30.7   7.0   55  262-319   279-334 (378)
157 PRK07108 acetyl-CoA acetyltran  94.9   0.069 1.8E-06   32.2   5.3   70  231-300   293-367 (392)
158 PRK08235 acetyl-CoA acetyltran  94.8    0.04   1E-06   33.8   4.0   69  232-300   295-368 (393)
159 PRK06689 consensus              94.6   0.046 1.2E-06   33.4   4.0   87  231-317   292-383 (391)
160 PRK06025 acetyl-CoA acetyltran  94.6    0.11 2.7E-06   31.0   5.7   76  231-306   318-398 (417)
161 PRK07661 acetyl-CoA acetyltran  94.6   0.046 1.2E-06   33.3   3.9   69  232-300   286-359 (384)
162 PRK09352 3-oxoacyl-(acyl carri  94.6   0.062 1.6E-06   32.5   4.5   15  260-274   225-239 (319)
163 cd00830 KAS_III Ketoacyl-acyl   94.5    0.13 3.3E-06   30.4   5.9   13  235-247   257-269 (320)
164 CHL00203 fabH 3-oxoacyl-acyl-c  94.5   0.084 2.2E-06   31.6   5.0   16  233-248   258-273 (327)
165 PRK09052 acetyl-CoA acetyltran  94.4   0.066 1.7E-06   32.3   4.3   76  231-306   300-380 (399)
166 TIGR02845 spore_V_AD stage V s  94.4   0.095 2.4E-06   31.3   5.1   80  219-304    42-126 (331)
167 PRK06840 hypothetical protein;  94.3   0.071 1.8E-06   32.1   4.3   16  260-275   242-257 (337)
168 PRK07850 acetyl-CoA acetyltran  94.2   0.067 1.7E-06   32.3   4.0   69  232-300   289-362 (387)
169 PRK09258 3-oxoacyl-(acyl carri  94.0    0.19 4.7E-06   29.4   5.9   17  259-275   244-260 (339)
170 PRK08963 fadI 3-ketoacyl-CoA t  93.9   0.072 1.8E-06   32.1   3.6   69  232-300   321-411 (436)
171 cd00327 cond_enzymes Condensin  93.9     0.1 2.6E-06   31.1   4.4   26   57-82    146-171 (254)
172 pfam02801 Ketoacyl-synt_C Beta  93.9    0.16   4E-06   29.9   5.4   77  229-305    26-112 (117)
173 PRK08170 acetyl-CoA acetyltran  93.7   0.073 1.9E-06   32.0   3.4   76  231-306   310-407 (426)
174 PRK05963 3-oxoacyl-(acyl carri  93.6    0.07 1.8E-06   32.1   3.2   16  233-248   260-275 (327)
175 PRK06690 acetyl-CoA acetyltran  93.5   0.093 2.4E-06   31.4   3.7   69  232-300   262-335 (361)
176 PRK07855 lipid-transfer protei  93.5    0.28 7.1E-06   28.2   6.0   14   63-76    155-168 (386)
177 PRK07204 3-oxoacyl-(acyl carri  93.2    0.32 8.2E-06   27.8   6.0   12  263-274   238-249 (329)
178 PRK06158 thiolase; Provisional  93.0   0.097 2.5E-06   31.2   3.1   13    2-14      6-18  (384)
179 cd00829 SCP-x_thiolase Thiolas  92.9    0.36 9.1E-06   27.5   5.9   20  228-247   278-297 (375)
180 cd00751 thiolase Thiolase are   92.7    0.34 8.6E-06   27.7   5.6   80  232-311   289-370 (386)
181 cd00826 nondecarbox_cond_enzym  92.7    0.65 1.7E-05   25.8   7.0   43  231-273   272-314 (393)
182 COG3424 BcsA Predicted naringe  92.6    0.27 6.9E-06   28.3   5.0   29  143-171   216-244 (356)
183 PRK08371 consensus              92.4     0.1 2.6E-06   31.1   2.6   10    5-14      3-12  (388)
184 PRK08256 lipid-transfer protei  92.4    0.11 2.8E-06   30.9   2.7   22    4-25      1-25  (391)
185 PRK09268 acetyl-CoA acetyltran  92.3   0.062 1.6E-06   32.5   1.4   75  232-306   314-410 (428)
186 PRK08257 acetyl-CoA acetyltran  91.7    0.41   1E-05   27.2   5.0   91  228-322   294-394 (502)
187 PRK08142 acetyl-CoA acetyltran  91.3    0.16 4.2E-06   29.8   2.6   18    2-20      3-20  (388)
188 PRK04262 hypothetical protein;  91.2    0.76 1.9E-05   25.4   6.0   15  233-247   241-255 (346)
189 PRK07516 acetyl-CoA acetyltran  90.4    0.17 4.3E-06   29.7   2.0   91  231-321   263-380 (389)
190 PRK06065 acetyl-CoA acetyltran  90.1     0.3 7.7E-06   28.0   3.1   13    2-14      8-20  (393)
191 PRK07910 3-oxoacyl-(acyl carri  90.0    0.21 5.3E-06   29.1   2.2   83  233-319   326-409 (418)
192 PRK05952 3-oxoacyl-(acyl carri  89.7    0.44 1.1E-05   26.9   3.7   40   71-112   158-200 (379)
193 PRK08313 acetyl-CoA acetyltran  89.6    0.44 1.1E-05   27.0   3.6   40  283-322   334-380 (391)
194 PRK12578 acetyl-CoA acetyltran  89.6    0.33 8.4E-06   27.8   3.0   22    4-25      1-24  (385)
195 PRK09185 3-oxoacyl-(acyl carri  89.6    0.32 8.1E-06   27.9   2.9   81  234-319   303-385 (395)
196 PRK07937 lipid-transfer protei  89.4    0.29 7.3E-06   28.2   2.5   11    4-14      2-12  (352)
197 PRK12880 3-oxoacyl-(acyl carri  89.3    0.56 1.4E-05   26.2   4.0   16  233-248   274-289 (353)
198 cd00832 CLF Chain-length facto  89.3    0.28 7.2E-06   28.2   2.4   86  233-322   310-396 (399)
199 pfam08541 ACP_syn_III_C 3-Oxoa  89.1    0.17 4.2E-06   29.7   1.1   68   66-141     1-77  (90)
200 cd00825 decarbox_cond_enzymes   89.1    0.28   7E-06   28.3   2.2   23   57-84    101-123 (332)
201 PRK06157 acetyl-CoA acetyltran  87.5    0.51 1.3E-05   26.5   2.8   16    2-17      5-20  (400)
202 PRK13942 protein-L-isoaspartat  86.7     1.2 3.1E-05   24.1   4.3   32   90-122    61-93  (214)
203 COG0304 FabB 3-oxoacyl-(acyl-c  86.0    0.56 1.4E-05   26.3   2.3   14  306-319   389-402 (412)
204 PRK13943 protein-L-isoaspartat  85.5    0.91 2.3E-05   24.9   3.2   20  124-143   115-135 (317)
205 KOG1394 consensus               84.4    0.68 1.7E-05   25.7   2.1   50  224-275   268-321 (440)
206 PRK13944 protein-L-isoaspartat  83.7     1.3 3.2E-05   24.0   3.3   32   90-122    57-89  (205)
207 pfam01135 PCMT Protein-L-isoas  83.5     1.3 3.4E-05   23.8   3.3   22   90-111    58-80  (205)
208 pfam02801 Ketoacyl-synt_C Beta  83.3    0.44 1.1E-05   27.0   0.8   46   56-102    25-71  (117)
209 PRK06501 3-oxoacyl-(acyl carri  83.1    0.53 1.3E-05   26.4   1.1   13   72-84    190-202 (425)
210 PRK00312 pcm protein-L-isoaspa  82.7     1.4 3.6E-05   23.6   3.2   33   89-122    62-95  (213)
211 TIGR00080 pimt protein-L-isoas  82.7     1.7 4.3E-05   23.2   3.6   47   93-145    68-117 (228)
212 PRK07103 polyketide beta-ketoa  81.2    0.64 1.6E-05   25.9   1.0   68  245-319   336-406 (415)
213 PRK07591 threonine synthase; V  79.7     2.7   7E-05   21.8   3.8   68  252-319   314-393 (422)
214 PRK05638 threonine synthase; V  78.5     3.2 8.1E-05   21.3   3.8   68  252-319   280-358 (443)
215 PRK08197 threonine synthase; V  78.4     3.2 8.1E-05   21.3   3.9   61  259-319   310-381 (402)
216 PRK09585 anmK anhydro-N-acetyl  77.4     4.1 0.00011   20.6   4.2   64   55-118    70-143 (366)
217 TIGR01921 DAP-DH diaminopimela  77.3     5.7 0.00014   19.7   5.9  118    1-141     1-121 (326)
218 TIGR02823 oxido_YhdH putative   76.9     1.7 4.5E-05   23.0   2.1   19  251-269   275-293 (330)
219 TIGR01287 nifH nitrogenase iro  75.8     6.2 0.00016   19.4   4.8   21  250-270   253-273 (278)
220 TIGR01751 crot-CoA-red crotony  75.3     2.2 5.5E-05   22.4   2.3   30  290-320   377-407 (409)
221 PRK13410 molecular chaperone D  75.0     3.2 8.2E-05   21.3   3.1   56  219-274   296-358 (719)
222 TIGR01090 apt adenine phosphor  75.0     2.6 6.6E-05   21.9   2.6   81  217-313    25-121 (175)
223 PRK09275 aspartate aminotransf  74.5     4.5 0.00011   20.3   3.7   95   36-131    77-187 (531)
224 TIGR00151 ispF 2C-methyl-D-ery  74.2     4.5 0.00011   20.3   3.7   67  213-287    70-145 (159)
225 PRK00950 histidinol-phosphate   73.4     6.9 0.00018   19.1   4.4   30    5-36      8-37  (369)
226 KOG1794 consensus               73.3     7.2 0.00018   19.0   4.7  123   38-171    29-164 (336)
227 TIGR02482 PFKA_ATP 6-phosphofr  73.1     3.4 8.6E-05   21.2   2.8   27  112-138   139-165 (302)
228 TIGR02446 FadI acetyl-CoA C-ac  73.1     3.9   1E-04   20.7   3.1   88   51-138    28-116 (430)
229 PRK07409 threonine synthase; V  72.5     5.9 0.00015   19.6   3.9   35  285-319   289-323 (350)
230 TIGR02470 sucr_synth sucrose s  72.3     1.6   4E-05   23.4   0.9   95    5-106   314-418 (790)
231 COG0381 WecB UDP-N-acetylgluco  71.4     7.9  0.0002   18.7   6.0   85   50-142    69-176 (383)
232 PRK06260 threonine synthase; V  70.9     6.2 0.00016   19.4   3.7   61  259-319   301-372 (400)
233 PRK06721 threonine synthase; R  70.8     6.7 0.00017   19.2   3.9   34  286-319   286-319 (352)
234 pfam01295 Adenylate_cycl Adeny  69.8     8.5 0.00022   18.5   4.4   15   23-37    358-372 (830)
235 PRK06352 threonine synthase; V  69.5     7.3 0.00019   19.0   3.9   35  285-319   285-319 (351)
236 PRK08942 D,D-heptose 1,7-bisph  69.1     5.8 0.00015   19.6   3.3   49  229-278    69-126 (181)
237 PRK05183 hscA chaperone protei  68.7     3.1 7.8E-05   21.4   1.8   56  219-274   301-363 (621)
238 pfam02887 PK_C Pyruvate kinase  68.1     7.5 0.00019   18.9   3.7   27  290-316    77-103 (117)
239 PRK03910 D-cysteine desulfhydr  67.5     9.5 0.00024   18.2   5.3   46  261-316   273-318 (331)
240 COG2518 Pcm Protein-L-isoaspar  67.3     4.5 0.00012   20.3   2.4   32   89-121    56-88  (209)
241 PTZ00186 heat shock 70 kDa pre  66.9     2.7 6.9E-05   21.8   1.2   43  231-273   337-382 (657)
242 PRK00055 ribonuclease Z; Revie  66.7     9.8 0.00025   18.1   4.1   68    1-90      1-68  (259)
243 COG0533 QRI7 Metal-dependent p  66.0       5 0.00013   20.1   2.4   35   56-92     52-86  (342)
244 TIGR02350 prok_dnaK chaperone   65.9       3 7.5E-05   21.5   1.3   43   58-103   308-351 (598)
245 PRK05446 imidazole glycerol-ph  64.8     8.1 0.00021   18.7   3.3   47   36-88     52-98  (354)
246 TIGR02430 pcaF beta-ketoadipyl  64.7     4.5 0.00012   20.3   2.0   94   53-146    24-121 (400)
247 cd01451 vWA_Magnesium_chelatas  64.2      11 0.00028   17.8   5.3   87   52-142    16-107 (178)
248 PRK02731 histidinol-phosphate   63.9      11 0.00028   17.8   4.8   24    6-31      8-31  (367)
249 pfam01968 Hydantoinase_A Hydan  63.4      11 0.00029   17.7   4.0   53  220-272   209-261 (285)
250 TIGR03285 methan_mark_14 putat  62.8     4.9 0.00012   20.1   1.9   42   51-92     62-104 (445)
251 COG3072 CyaA Adenylate cyclase  62.7     7.7  0.0002   18.8   2.9   36  228-263   618-656 (853)
252 PRK09605 O-sialoglycoprotein e  62.7     9.4 0.00024   18.2   3.3   79   57-143    52-135 (536)
253 TIGR02824 quinone_pig3 putativ  61.9     6.6 0.00017   19.2   2.5   38   63-104   134-171 (334)
254 PRK00290 dnaK molecular chaper  61.1      12 0.00032   17.5   3.7   57  219-275   296-359 (631)
255 TIGR00289 TIGR00289 conserved   60.6     6.5 0.00017   19.3   2.2   31   74-105    88-118 (227)
256 CHL00094 dnaK heat shock prote  59.8      12 0.00031   17.5   3.5   57  219-275   296-359 (622)
257 COG3894 Uncharacterized metal-  58.5     8.9 0.00023   18.4   2.6   65  229-294   475-540 (614)
258 TIGR02445 fadA acetyl-CoA C-ac  57.3      10 0.00026   18.0   2.8   93   51-144    22-119 (385)
259 COG2073 CbiG Cobalamin biosynt  56.8      15 0.00037   17.0   4.9   84  229-321   210-295 (298)
260 TIGR01120 rpiB ribose 5-phosph  56.6     8.4 0.00021   18.6   2.2   75   60-144    15-89  (143)
261 pfam03377 Avirulence Xanthomon  55.8      15 0.00039   16.9   4.8   42  237-278   204-252 (289)
262 TIGR01991 HscA Fe-S protein as  55.1     6.1 0.00016   19.5   1.3  104   58-170   322-448 (628)
263 PRK13411 molecular chaperone D  53.2      17 0.00043   16.6   3.6   50  219-268   295-351 (655)
264 TIGR02810 agaZ_gatZ D-tagatose  52.4     3.3 8.5E-05   21.2  -0.4   33  235-268   347-380 (430)
265 PRK09450 cyaA adenylate cyclas  52.3      17 0.00044   16.5   4.4   15   23-37    353-367 (833)
266 PRK03158 histidinol-phosphate   52.2      17 0.00044   16.5   4.7   25    6-32      5-29  (359)
267 PTZ00340 O-sialoglycoprotein e  51.9      18 0.00045   16.5   3.6   33   59-93     61-93  (348)
268 KOG2707 consensus               51.9      13 0.00033   17.3   2.6   30   59-89     87-116 (405)
269 TIGR00329 gcp metalloendopepti  50.9      18 0.00046   16.4   4.2   75   60-142    59-142 (337)
270 COG4977 Transcriptional regula  50.8      10 0.00026   18.0   1.9   25   96-120    64-88  (328)
271 cd04333 ProX_deacylase This CD  50.8      18 0.00047   16.4   3.4   14   60-73      2-15  (148)
272 PRK09604 putative DNA-binding/  50.7      18 0.00047   16.4   4.5   33   59-93     56-88  (335)
273 pfam00814 Peptidase_M22 Glycop  50.1      13 0.00033   17.4   2.3   34   57-92     31-64  (225)
274 TIGR02316 propion_prpE propion  49.8      19 0.00048   16.3   3.9   52   31-87     33-84  (634)
275 TIGR01341 aconitase_1 aconitat  49.2      19 0.00049   16.2   4.7   70   17-89     39-120 (896)
276 KOG2708 consensus               48.6      12  0.0003   17.6   1.9   95   58-161    53-151 (336)
277 PRK03321 putative aminotransfe  48.4      20 0.00051   16.1   5.9   16    7-22      8-23  (352)
278 TIGR02177 PorB_KorB 2-oxoacid:  48.3      20  0.0005   16.2   3.0   40   59-100    13-57  (302)
279 TIGR02651 RNase_Z ribonuclease  46.9     8.7 0.00022   18.5   1.0   68    5-90      1-69  (327)
280 TIGR01418 PEP_synth phosphoeno  45.9     6.6 0.00017   19.2   0.3   32   70-104   426-473 (877)
281 pfam09887 DUF2114 Uncharacteri  45.6      14 0.00036   17.1   2.0   41   51-91     64-106 (448)
282 pfam00862 Sucrose_synth Sucros  44.9      18 0.00047   16.3   2.5   35  233-270   390-425 (550)
283 COG0241 HisB Histidinol phosph  44.8      23 0.00057   15.8   3.2   53  229-282    71-132 (181)
284 TIGR01371 met_syn_B12ind 5-met  44.7      23 0.00058   15.8   3.1   10  259-268   512-521 (778)
285 pfam03702 UPF0075 Uncharacteri  43.1      24 0.00061   15.6   7.3   62   56-118    68-142 (363)
286 COG1448 TyrB Aspartate/tyrosin  43.0      11 0.00029   17.7   1.2  117   36-168   136-260 (396)
287 TIGR00417 speE spermidine synt  42.9      15 0.00038   16.9   1.7   54  229-282   176-231 (284)
288 pfam06406 StbA StbA protein. T  42.5      21 0.00052   16.0   2.4   30   52-81     72-101 (318)
289 TIGR01485 SPP_plant-cyano sucr  42.4      25 0.00062   15.5   5.8   40  230-270   137-184 (257)
290 PRK09206 pyruvate kinase; Prov  42.2      25 0.00063   15.5   3.4   30  290-319   430-462 (470)
291 PRK05166 histidinol-phosphate   41.5      25 0.00064   15.4   5.3   22    8-31     16-37  (374)
292 PTZ00009 heat shock 70 kDa pro  41.2      24 0.00062   15.6   2.6   27  232-258   317-343 (657)
293 cd01563 Thr-synth_1 Threonine   40.8      26 0.00066   15.4   3.8   49  270-318   267-322 (324)
294 pfam00012 HSP70 Hsp70 protein.  40.6      26 0.00066   15.4   6.3   57  219-275   293-356 (598)
295 cd06188 NADH_quinone_reductase  40.6      26 0.00067   15.4   4.1   44  232-277   234-280 (283)
296 PRK05387 histidinol-phosphate   40.5      26 0.00067   15.3   5.1   20    6-25      7-26  (353)
297 smart00829 PKS_ER Enoylreducta  40.3      24  0.0006   15.6   2.4   33   67-103    98-130 (288)
298 pfam01890 CbiG_C Cobalamin syn  38.7      28 0.00071   15.2   3.7   42  230-271    17-60  (121)
299 TIGR01393 lepA GTP-binding pro  38.1      18 0.00047   16.3   1.6   76    1-86    227-303 (598)
300 KOG1015 consensus               38.0      20 0.00051   16.1   1.7   90   41-141   641-736 (1567)
301 cd06449 ACCD Aminocyclopropane  37.5      29 0.00074   15.1   3.5   30  286-315   277-306 (307)
302 PRK13929 rod-share determining  37.3      18 0.00045   16.5   1.4   71  227-298   255-331 (335)
303 TIGR02362 dhaK1b probable dihy  37.2      19 0.00048   16.3   1.5   74   69-145    52-135 (328)
304 TIGR02478 6PF1K_euk 6-phosphof  37.1      29 0.00075   15.0   4.2   62    4-75    243-317 (777)
305 PRK04761 ppnK inorganic polyph  37.1      21 0.00054   16.0   1.8   59   56-120     5-64  (246)
306 cd04493 BRCA2DBD_OB1 BRCA2DBD_  36.3      30 0.00077   14.9   2.5   37  108-144    24-65  (100)
307 PRK05464 Na(+)-translocating N  36.2      31 0.00078   14.9   4.0   44  235-283   361-407 (408)
308 COG2377 Predicted molecular ch  35.6      22 0.00055   15.9   1.6   62   55-117    72-146 (371)
309 COG0013 AlaS Alanyl-tRNA synth  35.2      32 0.00081   14.8   3.5   13  304-316   651-663 (879)
310 PRK13980 NAD synthetase; Provi  35.0      16 0.00041   16.7   0.9   71   92-167    73-158 (264)
311 cd00288 Pyruvate_Kinase Pyruva  34.7      32 0.00082   14.8   3.8   24  290-313   440-463 (480)
312 TIGR03286 methan_mark_15 putat  34.4      27 0.00069   15.2   2.0   25   55-79    178-202 (404)
313 TIGR00263 trpB tryptophan synt  34.0      33 0.00084   14.7   3.4  129   59-188   167-325 (412)
314 PRK03566 consensus              33.7      33 0.00085   14.7   5.3   22    8-31     10-31  (365)
315 PRK06851 hypothetical protein;  33.6      33 0.00085   14.6   5.1   55   49-103    39-109 (368)
316 PRK13609 diacylglycerol glucos  33.5      18 0.00045   16.4   0.9   30  276-307   346-375 (388)
317 PRK07027 cobalamin biosynthesi  33.3      34 0.00086   14.6   3.4   27   55-81     16-42  (126)
318 PRK00768 nadE NAD synthetase;   33.0      34 0.00087   14.6   4.5   32  131-166   150-181 (274)
319 pfam02353 CMAS Cyclopropane-fa  32.5      35 0.00089   14.5   2.6  106   21-141     6-119 (273)
320 COG0426 FpaA Uncharacterized f  32.4      35 0.00089   14.5   3.0   33   51-88     53-85  (388)
321 TIGR00761 argB acetylglutamate  32.0      34 0.00087   14.6   2.2   63   63-136    91-158 (254)
322 cd06221 sulfite_reductase_like  31.8      36 0.00091   14.5   3.0   53  236-290   179-239 (253)
323 pfam01902 ATP_bind_4 ATP-bindi  31.7      34 0.00087   14.6   2.1  113    7-139    25-141 (219)
324 PRK11873 arsM arsenite S-adeno  31.4      23 0.00058   15.7   1.2   18  108-127    77-94  (258)
325 TIGR01163 rpe ribulose-phospha  30.6      37 0.00095   14.3   5.7   98  211-319    28-142 (216)
326 pfam12244 DUF3606 Protein of u  30.6      37 0.00096   14.3   2.3   44  242-287     6-49  (57)
327 PRK12390 1-aminocyclopropane-1  30.1      38 0.00097   14.3   4.6   46  261-316   279-324 (337)
328 cd01994 Alpha_ANH_like_IV This  30.1      38 0.00097   14.3   2.4   66   62-138    77-143 (194)
329 pfam09103 BRCA-2_OB1 BRCA2, ol  29.9      39 0.00098   14.2   2.5   71   61-144     2-77  (118)
330 PRK02628 nadE NAD synthetase;   29.5      39   0.001   14.2   2.8   51  235-285   383-444 (678)
331 PRK11872 antC anthranilate dio  29.1      40   0.001   14.2   3.7   41  234-276   288-331 (340)
332 TIGR02684 dnstrm_HI1420 probab  29.0      20  0.0005   16.2   0.5   64  228-291    15-78  (91)
333 PRK09483 response regulator; P  28.6      39 0.00099   14.2   2.0   95   57-172    12-107 (216)
334 PRK03202 6-phosphofructokinase  27.7      34 0.00087   14.6   1.5   72   71-147    90-174 (323)
335 PRK03359 putative electron tra  27.5      42  0.0011   14.0   2.3   14   57-70     40-53  (256)
336 PRK00561 ppnK inorganic polyph  27.5      42  0.0011   14.0   3.3   62   55-122    13-74  (259)
337 PRK02947 hypothetical protein;  27.4      21 0.00052   16.0   0.4   14  231-245   204-217 (247)
338 PRK05826 pyruvate kinase; Prov  27.4      43  0.0011   14.0   3.5   25  289-313   432-456 (461)
339 PRK13385 2-C-methyl-D-erythrit  27.2      43  0.0011   14.0   6.2   10   74-83     44-53  (238)
340 TIGR00689 rpiB_lacA_lacB sugar  27.2      43  0.0011   13.9   2.6   64   61-130    15-78  (146)
341 COG2230 Cfa Cyclopropane fatty  27.1      43  0.0011   13.9   2.6  105   20-138    15-126 (283)
342 TIGR01258 pgm_1 phosphoglycera  27.0      32 0.00081   14.8   1.3  175   58-296    35-217 (248)
343 PRK13930 rod shape-determining  27.0      39   0.001   14.2   1.8   46  229-274   260-311 (336)
344 PRK09257 aromatic amino acid a  26.9      43  0.0011   13.9   3.9  116   36-167   136-259 (397)
345 cd01781 AF6_RA_repeat2 The AF-  26.8      39   0.001   14.2   1.7   28  230-257    28-55  (100)
346 pfam07736 CM_1 Chorismate muta  26.4      44  0.0011   13.9   2.1   45   61-109    25-72  (118)
347 pfam02261 Asp_decarbox Asparta  26.4      24 0.00061   15.6   0.6   10  134-143    42-51  (116)
348 PRK09629 bifunctional thiosulf  26.1      38 0.00097   14.3   1.5   47   60-110   209-255 (610)
349 COG4065 Uncharacterized protei  25.9      45  0.0012   13.8   3.1   42   51-92     94-137 (480)
350 PRK05449 aspartate alpha-decar  25.8      24 0.00061   15.6   0.5   36  134-169    42-80  (126)
351 TIGR01011 rpsB_bact ribosomal   25.7      34 0.00087   14.6   1.2   58   81-144    14-75  (227)
352 cd01714 ETF_beta The electron   25.6      46  0.0012   13.8   2.5   11  135-145   109-119 (202)
353 PRK00782 hypothetical protein;  25.4      46  0.0012   13.7   4.7   63  231-293   162-230 (272)
354 TIGR01136 cysKM cysteine synth  25.4      39   0.001   14.2   1.5   75   57-138    45-141 (315)
355 COG0853 PanD Aspartate 1-decar  25.2      33 0.00084   14.7   1.1   10  161-170    71-80  (126)
356 PRK01533 histidinol-phosphate   25.2      46  0.0012   13.7   4.7   25    4-30      3-27  (366)
357 TIGR01993 Pyr-5-nucltdase pyri  25.1      28 0.00071   15.2   0.7   30  256-285   162-192 (205)
358 COG3053 CitC Citrate lyase syn  25.0      47  0.0012   13.7   4.4   20   62-81     20-40  (352)
359 TIGR02802 Pal_lipo peptidoglyc  24.7      48  0.0012   13.7   2.3   49   50-98     45-96  (104)
360 cd06919 Asp_decarbox Aspartate  24.6      24 0.00062   15.5   0.3   10  134-143    41-50  (111)
361 PRK07392 threonine-phosphate d  24.6      48  0.0012   13.6   5.2   16   23-38     11-26  (358)
362 PRK05472 redox-sensing transcr  24.5      48  0.0012   13.6   3.7   11  133-143    84-94  (211)
363 COG2971 Predicted N-acetylgluc  24.4      48  0.0012   13.6   2.5  109   52-170    45-159 (301)
364 PRK11705 cyclopropane fatty ac  24.3      48  0.0012   13.6   2.4   31   96-128   158-189 (383)
365 TIGR01743 purR_Bsub pur operon  24.3      48  0.0012   13.6   3.0   70   64-138   118-201 (269)
366 cd01448 TST_Repeat_1 Thiosulfa  24.3      44  0.0011   13.9   1.6   37  259-295    65-101 (122)
367 TIGR01428 HAD_type_II haloacid  24.0      49  0.0012   13.6   2.4   19   54-72     62-80  (207)
368 cd03749 proteasome_alpha_type_  24.0      49  0.0012   13.6   2.3   27  226-252   182-209 (211)
369 pfam06723 MreB_Mbl MreB/Mbl pr  24.0      45  0.0011   13.8   1.6   49  228-276   251-305 (327)
370 pfam01650 Peptidase_C13 Peptid  23.7      38 0.00097   14.3   1.2   20   62-81     24-43  (258)
371 KOG0820 consensus               23.6      50  0.0013   13.5   3.2   14   63-76     48-61  (315)
372 PRK04841 transcriptional regul  23.1      51  0.0013   13.5   3.0   20  113-132   213-232 (903)
373 KOG0024 consensus               22.9      51  0.0013   13.4   1.8   11  247-257   317-327 (354)
374 PRK13928 rod shape-determining  22.8      50  0.0013   13.5   1.6   50  226-275   251-306 (325)
375 PRK04346 tryptophan synthase s  22.3      53  0.0013   13.4   1.8   87   59-148   171-266 (392)
376 TIGR00014 arsC arsenate reduct  22.3      53  0.0013   13.4   3.5   50  233-283    14-68  (114)
377 pfam02685 Glucokinase Glucokin  22.2      53  0.0014   13.3   3.5   48   60-107    40-96  (316)
378 TIGR02365 dha_L_ycgS dihydroxy  22.0      42  0.0011   14.0   1.1   16  282-297   181-198 (200)
379 KOG2865 consensus               22.0      21 0.00055   15.9  -0.4   64   59-131   121-191 (391)
380 PRK04152 consensus              21.6      54  0.0014   13.3   4.6   34    3-38      2-35  (364)
381 CHL00181 cbbX CbbX; Provisiona  21.6      55  0.0014   13.3   2.0   15  254-268   236-250 (287)
382 PRK05452 anaerobic nitric oxid  21.3      43  0.0011   13.9   1.1   20   70-89     66-85  (479)
383 pfam11212 DUF2999 Protein of u  21.2      49  0.0013   13.6   1.3   43  234-276     4-47  (82)
384 TIGR00878 purM phosphoribosylf  21.1      55  0.0014   13.3   1.6   66  218-288   215-294 (338)
385 COG1889 NOP1 Fibrillarin-like   21.1      52  0.0013   13.4   1.4   36  219-254   191-226 (231)
386 PRK11921 metallo-beta-lactamas  20.9      43  0.0011   14.0   1.0   18   71-88     65-82  (395)
387 cd06209 BenDO_FAD_NAD Benzoate  20.3      58  0.0015   13.1   3.7   39  237-277   183-224 (228)
388 KOG2112 consensus               20.2      58  0.0015   13.1   2.5   18  114-131    67-84  (206)
389 PRK12613 galactose-6-phosphate  20.2      58  0.0015   13.1   2.0   22   54-76     11-32  (141)

No 1  
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III; InterPro: IPR004655   Beta-ketoacyl-acyl carrier protein synthase III (FabH), in general, initiates elongation in type II fatty acid synthase systems found in bacteria and plants. It is responsible for producing the multitude of fatty acid structures found in bacterial membranes . The two members of this subfamily from Bacillus subtilis differ from each other, and from FabH from Escherichia coli, in acyl group specificity. Active site residues include Cys112, His244 and Asn274 of Escherichia coli FabH. Cys-112 is the site of acyl group attachment. ; GO: 0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity, 0006633 fatty acid biosynthetic process.
Probab=100.00  E-value=0  Score=642.27  Aligned_cols=321  Identities=33%  Similarity=0.552  Sum_probs=308.1

Q ss_pred             CEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
Q ss_conf             20999999735886138889998809997683111475088994898879999999999986430132223442588431
Q gi|254780489|r    5 SSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLATS   84 (325)
Q Consensus         5 ~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~   84 (325)
                      ++.|.|+|.|+|++++||+||+|++++++|||..||||++||++.++|+.+.||++||++|||+|+++++|||+||++|.
T Consensus         2 ~~~i~g~G~YlP~~v~tNadL~k~vDTSDEWI~TRTGI~eRRiAad~E~~S~mg~~AA~~Aie~A~i~~~dID~iivaT~   81 (329)
T TIGR00747         2 KAKILGTGSYLPEKVLTNADLEKMVDTSDEWIVTRTGIKERRIAADDETSSHMGFEAAKKAIENAGISKDDIDLIIVATT   81 (329)
T ss_pred             EEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECC
T ss_conf             35789860307751357333453210683311236861000214720126899999999999852788668786798057


Q ss_pred             EECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             0023-68874322112100238633342101231012567657887438-850588620122444462224434325442
Q gi|254780489|r   85 TPDH-LLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLSRRINLEDKDTAIIFGDA  162 (325)
Q Consensus        85 t~d~-~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S~~~d~~d~~~~~lfGDg  162 (325)
                      |||+ .+||.||+||..||++++++||++.+|+||+++|++|.+|+++| ++++|||++|.+|+.+||+||+|.+|||||
T Consensus        82 ~pd~l~fPS~Ac~~~~~LGi~~~~aFD~~AACaGF~Y~Ls~A~~~i~SG~y~~vLvvGaeklSs~~D~~DR~TcvLFGDG  161 (329)
T TIGR00747        82 TPDYLAFPSAACMVQAYLGIKNIPAFDLSAACAGFIYGLSVAKQYIESGKYKTVLVVGAEKLSSTLDWTDRGTCVLFGDG  161 (329)
T ss_pred             CCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCC
T ss_conf             80000377858999976186676322236567668999999999861577026889985110553674668757996067


Q ss_pred             EEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCC--CCCCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             00112205765444531135532136776527830698667654455--6552322451454343201003678988997
Q gi|254780489|r  163 AGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNT--HDFYMRITNGADIFYNAVKIMAQSAKQSLRK  240 (325)
Q Consensus       163 A~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~  240 (325)
                      |+|+||++++...+..|+.+.+.+||+..+.++.+.+....|.....  ....+..|+|++|||++++.|.+.++++|++
T Consensus       162 AgA~v~g~s~~~~~~eI~~~~l~AdG~~~~~L~l~~~~~~~P~~~~~~~~~~~f~~M~G~evFk~Av~~m~~~~~~~l~~  241 (329)
T TIGR00747       162 AGAVVVGESEDDGGLEIISTNLGADGTQGELLYLPAGGRRCPFSKNTLQGSSPFITMEGNEVFKHAVRKMLKVVEETLEA  241 (329)
T ss_pred             CEEEEEECCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             22688704578776301234653056443213206777668877773446666178737325889999999999999997


Q ss_pred             HCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf             40120012246305654138999999719786570021854-09330005999999999806789998999998615510
Q gi|254780489|r  241 SDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKD-FGNSSSASIPLSLSLENQRKPFQKGEKILTISCRRGND  319 (325)
Q Consensus       241 ~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l~~-~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s  319 (325)
                      ++|+++|||||||||+|.||+++++|+|++++|+++.++.+ ||||++||||++|++++++|+||+||.+||.+||+|+|
T Consensus       242 a~l~~~DiD~lvPHQAN~RIi~a~ak~L~~~~~~Vv~Tv~khyGNTSAASiP~AL~E~~~~G~iK~Gd~~LL~AFGGGLt  321 (329)
T TIGR00747       242 AGLSKEDIDWLVPHQANIRIIEALAKRLELKESKVVKTVHKHYGNTSAASIPIALDELLETGRIKKGDLLLLVAFGGGLT  321 (329)
T ss_pred             HCCCHHHCCEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHH
T ss_conf             18783046155554111689999999708980316863200134630434667899987417777244888763060356


Q ss_pred             CCCCCC
Q ss_conf             201019
Q gi|254780489|r  320 RGIYCL  325 (325)
Q Consensus       320 ~ga~lL  325 (325)
                      ||+.++
T Consensus       322 WGa~~v  327 (329)
T TIGR00747       322 WGAALV  327 (329)
T ss_pred             HHHHHH
T ss_conf             677752


No 2  
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=100.00  E-value=0  Score=578.34  Aligned_cols=318  Identities=39%  Similarity=0.637  Sum_probs=301.9

Q ss_pred             CCEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf             62099999973588613888999880999768311147508899489887999999999998643013222344258843
Q gi|254780489|r    4 SSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLAT   83 (325)
Q Consensus         4 ~~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s   83 (325)
                      .+++|.|+|+|+|+++++|++++++++++++||.++|||++||++.++|++++|+++|+|+||++|+++|+|||+||++|
T Consensus         2 ~~a~i~g~G~~lP~~~vtn~d~e~~~~tsdewI~~rtGir~R~~a~~~e~~s~la~~Aa~~AL~~Agi~~~dIDlII~aT   81 (323)
T COG0332           2 MNAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRTGIRERRIAADDETTSDLAVEAARKALEDAGISPDDIDLIIVAT   81 (323)
T ss_pred             CCCEEEEEEEECCCCCCCHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEC
T ss_conf             85269988852687655778898536887110553037711231699954778999999999998699989998899966


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             1002368874322112100238633342101231012567657887438-850588620122444462224434325442
Q gi|254780489|r   84 STPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLSRRINLEDKDTAIIFGDA  162 (325)
Q Consensus        84 ~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S~~~d~~d~~~~~lfGDg  162 (325)
                      +|||+++|++|++||++||+.++.+||++.+|+||++||++|..++++| +|++|||++|++|+++||+||.++++||||
T Consensus        82 ~tpd~~~Ps~A~~vq~~LG~~~~~afDl~aaCsgf~yaL~~A~~~i~sG~~k~vLVVgae~~S~~ld~~dR~t~vlFgDG  161 (323)
T COG0332          82 STPDHLFPSTACLVQARLGLGGAPAFDLQAACSGFLYALSVADGLIRSGGYKNVLVVGAETLSRILDWTDRDTCVLFGDG  161 (323)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCHHHCCCEEEECCC
T ss_conf             78666688179999998589986666605355999999999999997589777999810584045887665612897377


Q ss_pred             EEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf             00112205765444531135532136776527830698667654455655232245145434320100367898899740
Q gi|254780489|r  163 AGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSD  242 (325)
Q Consensus       163 A~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~g  242 (325)
                      |+|+||++.+  .+.+++.+.+.+++++++....+.+....  ........+..++|++||+++++.++++++++|++++
T Consensus       162 AgAvvl~~~~--~~~~i~~~~l~sdg~~~~~l~~~~~~~~~--~~~~~~~~~~~m~Gr~vfk~av~~~~~~~~~~L~~~~  237 (323)
T COG0332         162 AGAVVLEATE--DDNGILDTDLGSDGSQGDLLYLPGGGSAT--PKEESGGGLLVMDGREVFKFAVRAMPKAIEEVLEKAG  237 (323)
T ss_pred             CEEEEEECCC--CCCCEEEEEEECCCCCCCEEECCCCCCCC--CCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             3599983578--77662342332356678744226777766--6444565323544588999999999999999999849


Q ss_pred             CCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC
Q ss_conf             12001224630565413899999971978657002185409330005999999999806789998999998615510201
Q gi|254780489|r  243 LQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRRGNDRGI  322 (325)
Q Consensus       243 l~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s~ga  322 (325)
                      ++++|||||+|||+|.++++.++++|++|++|++.++++||||++||+|++|++++++|++||||+|+|++||+|+|||+
T Consensus       238 l~~~dId~~vpHQan~ri~~~i~~~l~~~~~k~~~~~~~yGNtsaAsiplaL~~~~~~g~ik~Gd~vll~~fG~Gltwg~  317 (323)
T COG0332         238 LTPEDIDWFVPHQANLRIIEAIAKKLGIPEEKVVVTVDKYGNTSAASIPLALDEALREGRIKPGDLVLLEAFGGGLTWGA  317 (323)
T ss_pred             CCHHHCCEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEE
T ss_conf             99889988720645499999999982998899756898755463230899999874508989998999993037532136


Q ss_pred             CCC
Q ss_conf             019
Q gi|254780489|r  323 YCL  325 (325)
Q Consensus       323 ~lL  325 (325)
                      +++
T Consensus       318 ~~~  320 (323)
T COG0332         318 ALV  320 (323)
T ss_pred             EEE
T ss_conf             999


No 3  
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=100.00  E-value=0  Score=567.92  Aligned_cols=321  Identities=51%  Similarity=0.886  Sum_probs=304.9

Q ss_pred             CCEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf             62099999973588613888999880999768311147508899489887999999999998643013222344258843
Q gi|254780489|r    4 SSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLAT   83 (325)
Q Consensus         4 ~~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s   83 (325)
                      ..++|+|+|+|+|+++|+|+|++++++++++||+++|||++|||+.++|++++||++|+++||++++++|+|||+||++|
T Consensus         3 ~~~rI~g~G~ylP~~~v~n~el~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~ma~~Aa~~aL~~agi~~~dIdllI~~t   82 (327)
T PRK05963          3 CSSRIAGFGHAVPDRRVENAEIEAQLGLETGWIERRTGIRCRRWAMPDETLSHLAASAADMALADAGIERSDIALTLLAT   82 (327)
T ss_pred             CCCEEEEEEEECCCCEECHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEE
T ss_conf             46779999996799378399999882999799775369337998899999999999999999997598989987999986


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             10023688743221121002386333421012310125676578874388505886201224444622244343254420
Q gi|254780489|r   84 STPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSHQKPVLIIAANLLSRRINLEDKDTAIIFGDAA  163 (325)
Q Consensus        84 ~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g~~~vLVv~~e~~S~~~d~~d~~~~~lfGDgA  163 (325)
                      ++||+.+|++|++||++||++++.+|||+++|+||++||++|..+++++.+++|||++|.+|+.+|+.|+.+.++|||||
T Consensus        83 ~t~d~~~P~~A~~v~~~LGl~~~~~fDi~~aC~g~~~al~~A~~~i~~~~~~vLvv~~e~~S~~~~~~d~~~~~lfgDgA  162 (327)
T PRK05963         83 STPDHLLPPTAPLLAHWLGLQNSGAADLAGACTGFLYALVLADGFVRAQGKPVLVVAANILSRRINMAERASAVLFADAA  162 (327)
T ss_pred             ECCCCCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHCCCCCCHHHHHHHHCCCCC
T ss_conf             07999897099999998577861143597668999999999999997348637996410210358801233432304700


Q ss_pred             EEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCC--CCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             0112205765444531135532136776527830698667654455--65523224514543432010036789889974
Q gi|254780489|r  164 GAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNT--HDFYMRITNGADIFYNAVKIMAQSAKQSLRKS  241 (325)
Q Consensus       164 ~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~  241 (325)
                      +|+||++.+. +..+++...+.+++.+++.+.+|.+++..+.....  ....+.+++|+.+|+++++.+++.++++|+++
T Consensus       163 ~A~vl~~~~~-~~~g~l~~~~~td~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~L~~~  241 (327)
T PRK05963        163 GAVVLAPSAK-ANSGVLGSQLISDGSHYDLIQIPAGGSARPYAPERDASEFLMTMQDGRAVFTEAVRMMTGASQNVLASA  241 (327)
T ss_pred             CEEEEECCCC-CCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             0689841578-887446689864378766388557986788887666665524751749999999985299999999984


Q ss_pred             CCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
Q ss_conf             01200122463056541389999997197865700218540933000599999999980678999899999861551020
Q gi|254780489|r  242 DLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRRGNDRG  321 (325)
Q Consensus       242 gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s~g  321 (325)
                      |++++|||||+|||+|+++++.++++||+|+||++.++++||||+|||+|++|++++++++++|||+|+|++||+|+|||
T Consensus       242 gl~~~dId~~v~HQ~n~~~~~~v~~~lgl~~ek~~~~~~~~GNt~sAsipiaL~~a~~~g~l~~Gd~vll~g~G~G~s~g  321 (327)
T PRK05963        242 AMLPQDIDRFFPHQANARIVDKVCETLGIPRAKAASTIETYGNSSAATIPLSLSLANLEQPLREGERLLFAAAGAGMTGG  321 (327)
T ss_pred             CCCHHHCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHH
T ss_conf             99822288899867998999999998297978703027513924888999999999982999997999999986686354


Q ss_pred             CCCC
Q ss_conf             1019
Q gi|254780489|r  322 IYCL  325 (325)
Q Consensus       322 a~lL  325 (325)
                      +++|
T Consensus       322 ~~~~  325 (327)
T PRK05963        322 AVVM  325 (327)
T ss_pred             HHEE
T ss_conf             5126


No 4  
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00  E-value=0  Score=566.93  Aligned_cols=314  Identities=39%  Similarity=0.599  Sum_probs=298.8

Q ss_pred             CEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
Q ss_conf             20999999735886138889998809997683111475088994898879999999999986430132223442588431
Q gi|254780489|r    5 SSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLATS   84 (325)
Q Consensus         5 ~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~   84 (325)
                      +++|+|+|+|+|+++|+|+|++++++.+++||.++|||++|||++++|++++||++|+|+||++++++|+|||+||++|+
T Consensus         3 ~a~I~g~g~ylP~~~v~n~el~~~~~~~~~~i~~~tGI~~R~~a~~~e~~~~ma~~Aa~~aL~~ag~~~~dIdlli~~t~   82 (319)
T PRK09352          3 YAKILGTGSYLPERVVTNDDLEKMVDTSDEWIVTRTGIKERRIAAPDETTSDLATEAAKKALEAAGIDPEDIDLIIVATT   82 (319)
T ss_pred             CCEEEEEEEECCCCEECHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEC
T ss_conf             33898999978996586999998719988999756494589988999999999999999999975989889979999741


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             002368874322112100238633342101231012567657887438-8505886201224444622244343254420
Q gi|254780489|r   85 TPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLSRRINLEDKDTAIIFGDAA  163 (325)
Q Consensus        85 t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S~~~d~~d~~~~~lfGDgA  163 (325)
                      +||+.+|++|++||++||++++++|||+++|+||++||++|..++++| .+++|||++|++|+.+||+|+.++++|||||
T Consensus        83 t~d~~~P~~a~~v~~~LGl~~~~~fDi~~~C~g~~~aL~~A~~~i~~g~~~~~Lvv~~e~~S~~~d~~d~~~~~lfGDGA  162 (319)
T PRK09352         83 TPDYLFPSTACLVQARLGAKNAPAFDLSAACSGFVYALSTADQFIRSGAYKNALVIGAEKLSRIVDWTDRSTCVLFGDGA  162 (319)
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCCCCCCCHHEEEECCCC
T ss_conf             78998966999999997899973753743456899999999999866987626996110101424555500016615850


Q ss_pred             EEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf             01122057654445311355321367765278306986676544556552322451454343201003678988997401
Q gi|254780489|r  164 GAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDL  243 (325)
Q Consensus       164 ~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl  243 (325)
                      +|+||++++   +.+++.+.+.+++++++.+.++.++...+....    ....++|+++|+++++.+++.++++|+++|+
T Consensus       163 aA~vl~~~~---~~~~~~~~~~tdg~~~~~~~~~~~~~~~~~~~~----~~~~m~g~~v~~~a~~~~~~~i~~~L~~~gl  235 (319)
T PRK09352        163 GAVVLEASE---EPGILSTHLGSDGSGGDLLYLPGGGSRGPASGE----TYLRMEGREVFKFAVREMAKVAREALEAAGL  235 (319)
T ss_pred             CEEEEEECC---CCCEEEEEEEECCCCCCEEEECCCCCCCCCCCC----CCEEECHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             079997548---887368999974888875896788888987877----5467644999999998549999999987499


Q ss_pred             CCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf             20012246305654138999999719786570021854093300059999999998067899989999986155102010
Q gi|254780489|r  244 QPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRRGNDRGIY  323 (325)
Q Consensus       244 ~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s~ga~  323 (325)
                      +++|||||++||+|+++++.++++||+|++|++.++++||||+|||+|++|++++++|+++|||+|++++||+|+|||++
T Consensus       236 ~~~dId~~i~Hq~~~~~~~~~~~~lgi~~ek~~~~l~~~GNt~sasipi~L~~~~~~g~lk~Gd~vll~~~G~G~s~~~~  315 (319)
T PRK09352        236 TPEDIDWLVPHQANLRIIDATAKKLGLPMEKVVVTVDKYGNTSAASIPLALDEAVRDGRIKRGDLVLLEGFGGGLTWGAA  315 (319)
T ss_pred             CHHHCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHEEEEE
T ss_conf             83238789982676899999999819798885654875384588789999999998399999799999998447431788


Q ss_pred             CC
Q ss_conf             19
Q gi|254780489|r  324 CL  325 (325)
Q Consensus       324 lL  325 (325)
                      +|
T Consensus       316 vl  317 (319)
T PRK09352        316 LV  317 (319)
T ss_pred             EE
T ss_conf             99


No 5  
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00  E-value=0  Score=558.16  Aligned_cols=321  Identities=27%  Similarity=0.426  Sum_probs=299.1

Q ss_pred             CCCCEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             66620999999735886138889998809997683111475088994898879999999999986430132223442588
Q gi|254780489|r    2 IKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLL   81 (325)
Q Consensus         2 ~~~~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~   81 (325)
                      |+++++|+|+|+|+|+++|+|+|++++++++++||.++|||++|||++ +|++++|+++|+++||++++++|+|||+||+
T Consensus         1 m~~~v~I~g~g~ylP~~~v~n~el~~~~~~~~~~i~~~tGI~~R~~a~-~e~~sdma~~Aa~~aL~~agi~~~dIdliI~   79 (329)
T PRK07204          1 MKRYISIKGIGTYLPKRKVDSLEIDKMLDVPEGWTLKKAGVKTRYFVD-GETSSYMGAEAAKKAVEDAKLTWDDIDCIIC   79 (329)
T ss_pred             CCCCEEEEEEEEECCCCEECHHHHHHHCCCCHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHHHCCCCHHHCCEEEE
T ss_conf             998549999999669972859999988099879997623861685579-9985999999999999975989888849999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             4310023688743221121002386--33342101231012567657887438-85058862012244446222443432
Q gi|254780489|r   82 ATSTPDHLLPPSSPLITHRLGLMQS--GAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLSRRINLEDKDTAII  158 (325)
Q Consensus        82 ~s~t~d~~~P~~a~~v~~~Lg~~~~--~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S~~~d~~d~~~~~l  158 (325)
                      +|++||+.+|++|++||++||++++  .||||+++|+||++||++|..++++| .+++|||++|.+|+.+||.++.+.++
T Consensus        80 ~s~t~d~~~P~~A~~v~~~LGl~~~~~~afDi~~aC~g~~~al~~A~~~i~~g~~~~~Lvv~~e~~S~~~d~~~~~~~~l  159 (329)
T PRK07204         80 GSGTIQQAIPSTASLIQEQLGLQHSGIPCFDINSTCLSFITALDTISYAIECGRYKNVVIISSEISSVGLNWGQNESSIL  159 (329)
T ss_pred             ECCCCCCCCCCHHHHHHHHHCCCCCCCEEEEHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCE
T ss_conf             25789988980999999996478888355003011448999999999998669865258960334554436444331201


Q ss_pred             CCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCC---CCCCCCCCCCHHHHHHHCCCHHHHHH
Q ss_conf             544200112205765444531135532136776527830698667654455---65523224514543432010036789
Q gi|254780489|r  159 FGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNT---HDFYMRITNGADIFYNAVKIMAQSAK  235 (325)
Q Consensus       159 fGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~v~~~~~~~~~~~i~  235 (325)
                      |||||+|+||++++  +..+++.+++.+++...+.+.++.+++..|.....   .......++|+.+|+++.+++++.++
T Consensus       160 fGDGA~A~vl~~~~--~~~~il~~~~~t~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~  237 (329)
T PRK07204        160 FGDGAAAVVITKGD--HSSSIIASHMETYSSGAHLSEIRGGGTMIHPREYSEERKEDFLFDMNGRAIFKLSSKYLMKFID  237 (329)
T ss_pred             ECCCCEEEEEECCC--CCCCEEEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHH
T ss_conf             14651489995058--8884477997654797044111369854786323333466731760579999999862699999


Q ss_pred             HHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEC
Q ss_conf             88997401200122463056541389999997197865700218540933000599999999980678999899999861
Q gi|254780489|r  236 QSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCR  315 (325)
Q Consensus       236 ~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G  315 (325)
                      ++|+++|++++|||||+|||+|+++++.+.++||||+||++.++++||||+|||+|++|++++++|++++||+|++++||
T Consensus       238 ~~L~~~gl~~~DId~~i~HQ~n~~~~~~i~~~lgip~ek~~~~~~~~GNt~sasipi~L~~~~~~g~i~~Gd~vll~~~G  317 (329)
T PRK07204        238 KLLMDTGYSLADIDLIVPHQASGPAMRLIRKKLGVDEERFMTIFEDYGNMISASIPVALFEAIKQKKVQRGNKILLLGTS  317 (329)
T ss_pred             HHHHHCCCCHHHCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
T ss_conf             99987199978899899814888999999998096977621036311808988899999999984999996999999988


Q ss_pred             CCCCCCCCCC
Q ss_conf             5510201019
Q gi|254780489|r  316 RGNDRGIYCL  325 (325)
Q Consensus       316 ~G~s~ga~lL  325 (325)
                      +|+|||+++|
T Consensus       318 aG~s~ga~l~  327 (329)
T PRK07204        318 AGLSIGGILL  327 (329)
T ss_pred             HHHHHHHEEE
T ss_conf             6741502037


No 6  
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00  E-value=0  Score=560.70  Aligned_cols=316  Identities=24%  Similarity=0.331  Sum_probs=271.9

Q ss_pred             CCEEEEEEEEECCCCCCCHHHHHH------------------------HHCCCHHHEEECCCCCEEEEECC---------
Q ss_conf             620999999735886138889998------------------------80999768311147508899489---------
Q gi|254780489|r    4 SSSCILGFGHAVPNQCIHNSIIER------------------------HLNLKLGVIEQKTGIKYRYWAEK---------   50 (325)
Q Consensus         4 ~~~~I~g~g~~lP~~~i~n~~l~~------------------------~~~~~~~~i~~~tGI~~R~~~~~---------   50 (325)
                      +|++|+|+|+|+|+++|||+||.+                        .+++++|||.++|||++||++++         
T Consensus         1 ~n~~I~g~G~y~P~~vvtN~dl~~~~~~~~~~~~~~~~~~~~~~~~e~~vdtsdeWI~~rtGI~~R~i~~~~g~~~~~~~   80 (372)
T PRK07515          1 HNVVISGTGLYTPPESISNEELVESFNAYVDQFNAENAAAIEAGEVEALPPSSSEFIEKASGIKSRYVMEKEGILDPERM   80 (372)
T ss_pred             CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEEEEECCCCCCCCHHC
T ss_conf             96199997887799510489999877655544200003332134310255675677664246467775235676660001


Q ss_pred             ---------CC--CHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             ---------88--7999999999998643013222344258843100236887432211210023863334210123101
Q gi|254780489|r   51 ---------HE--TLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFL  119 (325)
Q Consensus        51 ---------~e--~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l  119 (325)
                               +|  +.+|||++|+++||++||++|+|||+||++|+|||+.+|++|+.||++||++ ..+|||+.+|+||+
T Consensus        81 ~p~~~~~~~d~~~~~sdma~~AA~~AL~~Agi~~~dIDlIIvaT~tpd~~~PstA~~vq~~LG~~-~~afDi~aaCsGfv  159 (372)
T PRK07515         81 RPRIPERSNDELSIQAEMGVAAARQALERAGKTAADIDGVIVACSNMQRAYPAMAIEIQEALGIE-GFAFDMNVACSSAT  159 (372)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHCCC-CEEHHHHCCCHHHH
T ss_conf             43333456643113799999999999998499989999999976888888972999999984898-42043614086899


Q ss_pred             HHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC---CCCEEEEEEECCCCCCEEE
Q ss_conf             2567657887438-85058862012244446222443432544200112205765444---5311355321367765278
Q gi|254780489|r  120 YALVMADSYINSH-QKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAVVLAPSPLKDK---SGILGIELTSDGSKYDLIK  195 (325)
Q Consensus       120 ~aL~~A~~~i~~g-~~~vLVv~~e~~S~~~d~~d~~~~~lfGDgA~A~il~~~~~~~~---~~il~~~~~s~~~~~~~~~  195 (325)
                      +||++|.+||++| +|++|||++|++|+++||+||.++++|||||+|+||++.+....   .+++++.+.++  +.+...
T Consensus       160 yaL~~A~~~I~sg~~k~vLVVgaE~~S~~~d~~DR~t~~LFGDGAgAvvle~~~~~~~~~~~~il~~~~~t~--~s~~i~  237 (372)
T PRK07515        160 FGIQTAANAIRSGSARRVLVVNPEICSGHLNFRDRDSHFIFGDVATAVIVERADTATSAGGFEILSTRLFTQ--FSNNIR  237 (372)
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCEEEECCCCCC--CCCCCC
T ss_conf             999999999971898747995342303362767877047761653024664114688877741566563466--566644


Q ss_pred             EECCCCC--CCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHC---CC
Q ss_conf             3069866--765445565523224514543432010036789889974012001224630565413899999971---97
Q gi|254780489|r  196 IPTGGST--SPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKI---GL  270 (325)
Q Consensus       196 ~~~~~~~--~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~l---gi  270 (325)
                      .+.+...  .+..... ...+..|+|++||+++++.+++.++++|+++|++++|||||+|||+|.+|++.++++|   ++
T Consensus       238 ~~~g~~~~~~~~~~~~-~~~~~~m~G~~Vfk~av~~~~~~i~~~L~~~gl~~~DId~~v~HQAN~rii~~i~k~llg~~~  316 (372)
T PRK07515        238 NNFGFLNRAEPEGAGD-ADKLFVQEGRKVFKEVCPMVAEHIVEHLAENGLTPADVKRLWLHQANINMNQLIGKKVLGRDA  316 (372)
T ss_pred             CCCCCCCCCCCCCCCC-CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf             5788667677678876-331114417899999999999999999998298988899998677899999999998545899


Q ss_pred             CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf             8657002185409330005999999999806789998999998615510201019
Q gi|254780489|r  271 SKRIMVNSLKDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRRGNDRGIYCL  325 (325)
Q Consensus       271 ~~~~~~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s~ga~lL  325 (325)
                      |++|++.++++||||+|||+|++|++.  .+++++||+|+|++||+|+|||+++|
T Consensus       317 ~~~k~~~~i~~yGNTssASiplaL~~~--~~~ik~Gd~vll~gfGaGltwGa~ll  369 (372)
T PRK07515        317 TPEEAPVILDEYANTSSAGSIIAFHKH--SDDLAAGDLGVICSFGAGYSIGSVIV  369 (372)
T ss_pred             CHHHHEEHHHHCCCHHHHHHHHHHHHH--HCCCCCCCEEEEEEEEHHHHHHHHHE
T ss_conf             988832207411847888999999998--48678999899999877985687433


No 7  
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00  E-value=0  Score=552.53  Aligned_cols=322  Identities=35%  Similarity=0.534  Sum_probs=304.9

Q ss_pred             CCCCEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             66620999999735886138889998809997683111475088994898879999999999986430132223442588
Q gi|254780489|r    2 IKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLL   81 (325)
Q Consensus         2 ~~~~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~   81 (325)
                      |.++++|+|+|+|+|+++|+|+|++++++++++||.+++||++||+++++|+++|||++|+|+||+++|++|+|||+||+
T Consensus         1 ~~~~~~I~g~g~ylP~~~v~n~~~~~~~~~~~~~i~~~~Gi~~R~~a~~~e~~~dma~~Aa~~aL~~ag~~~~dIdllI~   80 (326)
T PRK12879          1 MMSYARITGWGKYVPPRVLTNDDLATFIDTSDEWIVQRTGIKERRIAHVNEFTSDLAIKAAERALARAGLDASDIDLIIV   80 (326)
T ss_pred             CCCCCEEEEEEEECCCCEECHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEE
T ss_conf             99777899999988996585999998809988899864496489988999999999999999999975979889969999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             431002368874322112100238633342101231012567657887438-8505886201224444622244343254
Q gi|254780489|r   82 ATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLSRRINLEDKDTAIIFG  160 (325)
Q Consensus        82 ~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S~~~d~~d~~~~~lfG  160 (325)
                      +|++||+..|++|++||++||++++.+|||+++|+||++||++|..++++| .+++|||++|++|+.+|+.++.+.++||
T Consensus        81 ~t~~~d~~~P~~a~~v~~~LGl~~~~~fdi~~~C~g~~~aL~~A~~~i~~g~~~~~Lvv~~e~~s~~~d~~~~~~~~lfG  160 (326)
T PRK12879         81 ATTTPDYLFPSTASQVQARLGIPNAAAFDINAACSGFLYGLELANGLITSGSYKKVLVIGAERLSKYTDWTDRTTAILFG  160 (326)
T ss_pred             ECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHCCCCCCCCCHHHHHCCC
T ss_conf             52678982775999999986849951454012203799999999999866875503650202213532435433321017


Q ss_pred             CCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             42001122057654445311355321367765278306986676544556552322451454343201003678988997
Q gi|254780489|r  161 DAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRK  240 (325)
Q Consensus       161 DgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~  240 (325)
                      |||+|+||++++  +..+++.+.+.++++.++.+..+.++...+........+...++|+++|+++.+.+++.++++|++
T Consensus       161 DGAaA~ll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~L~~  238 (326)
T PRK12879        161 DGAGAVVVEATE--EPPGLIDYVLGTDGDGGDILYRTGLGTTMDRFDLDNGGFYFQFNGREVFKWAVRGMPKAAKQVLEK  238 (326)
T ss_pred             CCCEEEEEEECC--CCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             863389987248--888347899985377766588347887688755335675078642999999987569999999998


Q ss_pred             HCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf             40120012246305654138999999719786570021854093300059999999998067899989999986155102
Q gi|254780489|r  241 SDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRRGNDR  320 (325)
Q Consensus       241 ~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s~  320 (325)
                      +|++++|||||++||+|+++++.++++||+|+||++.++++||||+|||+|++|++++++++++|||+|++++||+|+||
T Consensus       239 ~gl~~~did~~i~Hq~~~~~~~~i~~~Lgl~~~k~~~~l~~~GN~~sasi~~~L~~~~~~g~l~~Gd~vll~~~G~G~s~  318 (326)
T PRK12879        239 AGLTKDDIDWVIPHQANLRIIESLCEKLGIPLEKTLVNVEYYGNTSAATIPLALCLALEQGKIKPGDTLLLYGFGAGLTW  318 (326)
T ss_pred             CCCCHHHCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHH
T ss_conf             59997788989986887899999999809798885656732274377789999999997399999699999999167322


Q ss_pred             CCCCC
Q ss_conf             01019
Q gi|254780489|r  321 GIYCL  325 (325)
Q Consensus       321 ga~lL  325 (325)
                      |++++
T Consensus       319 ~~~~~  323 (326)
T PRK12879        319 AALLV  323 (326)
T ss_pred             EEEEE
T ss_conf             48999


No 8  
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=100.00  E-value=0  Score=550.51  Aligned_cols=318  Identities=33%  Similarity=0.506  Sum_probs=293.0

Q ss_pred             EEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEE
Q ss_conf             09999997358861388899988099976831114750889948988799999999999864301322234425884310
Q gi|254780489|r    6 SCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLATST   85 (325)
Q Consensus         6 ~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t   85 (325)
                      ++|+|+|+|+|+++|+|+|++++++.+++||.++|||++|||++++|++++||++|+++||+++|++|+|||+||++|++
T Consensus         1 v~I~g~g~ylP~~~v~n~e~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~sdma~~Aa~~aL~~ag~~~~dIDllI~~t~t   80 (327)
T CHL00203          1 VHILSTGSSVPNFSIENQQFSQIVETSDEWISTRTGIKKRRLAGSSTSLTKLAAEAANKALHKAGWSAKDIDLIILATST   80 (327)
T ss_pred             CEEEEEEEECCCCEECHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCC
T ss_conf             97999999789917849999987299868885457940797789999999999999999997549997898889995004


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             02368874322112100238633342101231012567657887438-85058862012244446222443432544200
Q gi|254780489|r   86 PDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLSRRINLEDKDTAIIFGDAAG  164 (325)
Q Consensus        86 ~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S~~~d~~d~~~~~lfGDgA~  164 (325)
                      ||++. +.|+.||++||++++.+|||+++|+||++||++|..|+++| .+++|||++|++|+.+|++++.+.++|||||+
T Consensus        81 pd~~~-~~a~~v~~~LG~~~~~afDv~~aC~g~~~al~~A~~~i~sg~~~~~LvV~~E~~S~~~~~~~~~~~~~fGDgA~  159 (327)
T CHL00203         81 PDDLF-GSASQLQAEIGATQAVAFDITAACSGFIFALVTAGQFIQSGSYRNILIIGADTLSRWIDWSDRRTCILFGDGAG  159 (327)
T ss_pred             CCCCC-CHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCE
T ss_conf             67678-76999999858998637655200447999999999998569845147851432357656464545311378524


Q ss_pred             EEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCC----CCCCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             112205765444531135532136776527830698667654455----6552322451454343201003678988997
Q gi|254780489|r  165 AVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNT----HDFYMRITNGADIFYNAVKIMAQSAKQSLRK  240 (325)
Q Consensus       165 A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~  240 (325)
                      |++|++.+.. +.+++.+.+.++++.++.+.+..++...+.....    .......++|+++|+++++.+++.++++|++
T Consensus       160 A~il~~~~~~-~~~~l~~~~~tdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~  238 (327)
T CHL00203        160 AVAIGECPTE-ENSILGFKLCTDGSLNSHLQLMNKPDNMQLFNQTKYPMGGFNSISMNGKEVYKFAVFQVPAVIQECLNA  238 (327)
T ss_pred             EEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8987404677-784478999866777761787247877665676656678854278755999999999999999999987


Q ss_pred             HCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf             40120012246305654138999999719786570021854093300059999999998067899989999986155102
Q gi|254780489|r  241 SDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRRGNDR  320 (325)
Q Consensus       241 ~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s~  320 (325)
                      +|++++|||||++||+|+++++.++++|++|++|++.++++||||+|||+|++|++++++++++|||+|+|++||+|+||
T Consensus       239 ~g~~~~did~~v~HQ~~~~~~~~i~~~lgl~~~k~~~~~~~~GNt~sasip~~L~~~~~~g~l~~Gd~vll~g~G~G~s~  318 (327)
T CHL00203        239 LNISIDEVDWLLLHQANQRILEAVADRLSIPHSKMITNLEHYGNTSAASIPLALDEAIKDNKIQPGQIIVLSGFGAGLTW  318 (327)
T ss_pred             CCCCCCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHH
T ss_conf             69981118879988688999999999819797886654764496688899999999998499999899999998557202


Q ss_pred             CCCCC
Q ss_conf             01019
Q gi|254780489|r  321 GIYCL  325 (325)
Q Consensus       321 ga~lL  325 (325)
                      |+++|
T Consensus       319 g~~~~  323 (327)
T CHL00203        319 GAIVL  323 (327)
T ss_pred             EEEEE
T ss_conf             68999


No 9  
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=100.00  E-value=0  Score=545.95  Aligned_cols=319  Identities=40%  Similarity=0.633  Sum_probs=306.9

Q ss_pred             CEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
Q ss_conf             20999999735886138889998809997683111475088994898879999999999986430132223442588431
Q gi|254780489|r    5 SSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLATS   84 (325)
Q Consensus         5 ~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~   84 (325)
                      +++|+|+|+|+|+++|+|+|++++++++++||++++||++||+++++|++++||++|+|+||++++++|+|||+||++|+
T Consensus         1 ~~~I~~~g~y~P~~~v~n~~~~~~~g~~~~~i~~~~Gi~~R~~a~~~e~~~~ma~~Aa~~aL~~ag~~~~dIdlli~~s~   80 (320)
T cd00830           1 NARILGIGSYLPERVVTNDELEKRLDTSDEWIRTRTGIRERRIADPGETTSDLAVEAAKKALEDAGIDADDIDLIIVATS   80 (320)
T ss_pred             CCEEEEEEEECCCCEECHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECC
T ss_conf             97899999977993784999998869898999870297489988999999999999999999866989567888999415


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             002368874322112100238633342101231012567657887438-8505886201224444622244343254420
Q gi|254780489|r   85 TPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLSRRINLEDKDTAIIFGDAA  163 (325)
Q Consensus        85 t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S~~~d~~d~~~~~lfGDgA  163 (325)
                      +||+..|++|++|+++||++++.+|||+++|+||++||++|..++++| .+++|||++|.+|+.+|+.|+.+.++|||||
T Consensus        81 ~~~~~~P~~a~~v~~~LGl~~~~~fdi~~~C~g~~~aL~~A~~~i~~g~~~~~Lvv~~e~~s~~~~~~~~~~~~lfGDga  160 (320)
T cd00830          81 TPDYLFPATACLVQARLGAKNAAAFDINAACSGFLYGLSTAAGLIRSGGAKNVLVVGAETLSRILDWTDRSTAVLFGDGA  160 (320)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCCCCCCHHHCCCCCC
T ss_conf             68986883999999996889972251045511589999999999855987616998413422554546621111037863


Q ss_pred             EEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf             01122057654445311355321367765278306986676544556552322451454343201003678988997401
Q gi|254780489|r  164 GAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDL  243 (325)
Q Consensus       164 ~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl  243 (325)
                      +|+||++.+.  ..+++.+.+.|++++++.+.++.++...+............++++++|+++.+.+++.++++|+++|+
T Consensus       161 aA~ll~~~~~--~~~i~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~L~~~g~  238 (320)
T cd00830         161 GAVVLEATEE--DPGILDSVLGSDGSGADLLTIPAGGSRSPFEDAEGGDPYLVMDGREVFKFAVRLMPESIEEALEKAGL  238 (320)
T ss_pred             EEEEEEECCC--CCCEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             4899962488--88424689997068865268458976677643335676179732899998876569999999998599


Q ss_pred             CCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf             20012246305654138999999719786570021854093300059999999998067899989999986155102010
Q gi|254780489|r  244 QPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRRGNDRGIY  323 (325)
Q Consensus       244 ~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s~ga~  323 (325)
                      +++|||||++||+|+++++.++++||||+||++.++++||||++||+|++|++++++++++|||+|++++||+|+|||++
T Consensus       239 ~~~did~~v~Hq~~~~~~~~~~~~lgi~~~k~~~~~~~~GN~~sasi~~~L~~~~~~g~l~~Gd~vll~~~G~G~s~g~~  318 (320)
T cd00830         239 TPDDIDWFVPHQANLRIIEAVAKRLGLPEEKVVVNLDRYGNTSAASIPLALDEAIEEGKLKKGDLVLLLGFGAGLTWGAA  318 (320)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHH
T ss_conf             91016579970687899999999809698996756851075587689999999997499998599999998045325320


Q ss_pred             CC
Q ss_conf             19
Q gi|254780489|r  324 CL  325 (325)
Q Consensus       324 lL  325 (325)
                      +|
T Consensus       319 ~l  320 (320)
T cd00830         319 LL  320 (320)
T ss_pred             HC
T ss_conf             29


No 10 
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00  E-value=0  Score=548.57  Aligned_cols=314  Identities=27%  Similarity=0.400  Sum_probs=283.9

Q ss_pred             CCEEEEEEEEECCCCCCCHHHHHHHHCCCH----HHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf             620999999735886138889998809997----6831114750889948988799999999999864301322234425
Q gi|254780489|r    4 SSSCILGFGHAVPNQCIHNSIIERHLNLKL----GVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLT   79 (325)
Q Consensus         4 ~~~~I~g~g~~lP~~~i~n~~l~~~~~~~~----~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~i   79 (325)
                      .+++|.|+|+|+|+++|+|+|+.+.+..++    +|+.++|||++||+++++|+++|||++|+++||++++++|+|||+|
T Consensus         6 ~~akI~G~g~~vP~~~v~n~d~~~~~~~~d~~~~~~~~~~tGI~~R~~a~~~~~~sdla~~AA~~AL~~a~i~~~dID~I   85 (353)
T PRK12880          6 DKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKKVIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDAL   85 (353)
T ss_pred             CCCEEEEEEEECCCCEECCHHHHHHHCCCCHHHHEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEE
T ss_conf             44089999997799764147988765387467763342455845477879998699999999999999759998899999


Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             8843100236887432211210023-863334210123101256765788743885058862012244446222443432
Q gi|254780489|r   80 LLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSYINSHQKPVLIIAANLLSRRINLEDKDTAII  158 (325)
Q Consensus        80 i~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~i~~g~~~vLVv~~e~~S~~~d~~d~~~~~l  158 (325)
                      |++|+||||.+|++|+.||++||++ ++.||||+.+|+||++||++|..+|++|.+++|||++|.+|+++||+||.++++
T Consensus        86 I~aT~tpD~~~PstA~~vq~~LGl~~~~~AfDI~~aCsGfvyaL~~A~~~I~sg~~kvLlV~~e~~S~~id~~dr~t~~L  165 (353)
T PRK12880         86 IVVTQSPDFFMPSTACYLHQLLNLSSKTIAFDLGQACAGYLYGLFVAHSLIQSGLGKILLICGDTLSKFIHPKNMNLAPI  165 (353)
T ss_pred             EEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCHHHCCEEEE
T ss_conf             99737889088847899999809998850887454434699999999999981987489992267536778220551032


Q ss_pred             CCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCC-----------CCCCCCCCCCHHHHHHHC
Q ss_conf             544200112205765444531135532136776527830698667654455-----------655232245145434320
Q gi|254780489|r  159 FGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNT-----------HDFYMRITNGADIFYNAV  227 (325)
Q Consensus       159 fGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~g~~v~~~~~  227 (325)
                      |||||+|+||++.+..+  .+  ..+.+++++++.+.+|.++.+.|.....           +......|+|++||++++
T Consensus       166 FGDgAgA~vl~~~~~~~--~~--~~l~sdG~~~d~l~i~~gg~~~p~~~~~~~~~~~~~~~~~~~~~l~MdG~~Vf~~av  241 (353)
T PRK12880        166 FGDGVSATLIEKTDFNE--AF--FELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLMQTEEFRQLENLYMDGANIFNMAL  241 (353)
T ss_pred             ECCCCEEEEEECCCCCC--CE--EEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHH
T ss_conf             05774368873046786--42--898048888773784688655877555577532244334555533436589999999


Q ss_pred             CCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHH-HHHHCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             10036789889974012001224630565413899999971978657002-18540933000599999999980678999
Q gi|254780489|r  228 KIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVN-SLKDFGNSSSASIPLSLSLENQRKPFQKG  306 (325)
Q Consensus       228 ~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~-~l~~~GN~~sAsi~~~L~~~~~~g~i~~G  306 (325)
                      +.+|+.++++|+++|++++|||+|+|||+|.+|++.++++||+|+||++. ++++||||+|||||++|+++.+.+++   
T Consensus       242 ~~vp~~i~~~L~~agl~~~DId~~v~HQAN~riie~i~k~Lgl~~ek~~~~~~~~yGNTssASIPiaL~e~~~~~~~---  318 (353)
T PRK12880        242 ECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVDCIKEELKLNDDKVPNFIMEKYANLSACSLPALLCELDTPKEF---  318 (353)
T ss_pred             HHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC---
T ss_conf             99999999999983999788656865468899999999980989787030055533958999999999999874998---


Q ss_pred             CEEEEEEECCCCCCCCCCC
Q ss_conf             8999998615510201019
Q gi|254780489|r  307 EKILTISCRRGNDRGIYCL  325 (325)
Q Consensus       307 d~vll~~~G~G~s~ga~lL  325 (325)
                       +++|++||+|+|||+++|
T Consensus       319 -k~~L~gFGaGltwg~~ll  336 (353)
T PRK12880        319 -KASLSAFGAGLSWGSAVL  336 (353)
T ss_pred             -EEEEEEEEHHHHHEEEEE
T ss_conf             -446999835741238889


No 11 
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00  E-value=0  Score=543.65  Aligned_cols=321  Identities=22%  Similarity=0.263  Sum_probs=277.8

Q ss_pred             CEEEEEEEEECCCCCCCHHHHHHHH-------CCCHHHEEECCCCCEEEEE-----CCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             2099999973588613888999880-------9997683111475088994-----898879999999999986430132
Q gi|254780489|r    5 SSCILGFGHAVPNQCIHNSIIERHL-------NLKLGVIEQKTGIKYRYWA-----EKHETLTDIAIQAGDIALRNANIK   72 (325)
Q Consensus         5 ~~~I~g~g~~lP~~~i~n~~l~~~~-------~~~~~~i~~~tGI~~R~~~-----~~~e~~~~la~~Aa~~aL~~a~~~   72 (325)
                      +++|+|+|+|+|+++|+|+|+++++       +++++||.++|||++|||+     .++|++++||++|+|+||++||++
T Consensus         2 ~v~I~g~G~ylP~~vvtN~el~~~~~~~~~~~~~~~~~I~~rtGI~~Rr~a~~~~~~~~et~sdma~~Aa~~AL~~Agi~   81 (378)
T PRK06816          2 NVYITSTGAFLPGEPVDNDEMEAYLGLINGRPSRLRRIILRNNGIKTRHYAIDPTGETTHSNAQMAAHAIRDLLDDAGFG   81 (378)
T ss_pred             CCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             63999999978998255899999864157887748889775458213787407888876678999999999999975999


Q ss_pred             CCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCC
Q ss_conf             223442588431002368874322112100238633342101231012567657887438-8505886201224444622
Q gi|254780489|r   73 KDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLSRRINLE  151 (325)
Q Consensus        73 ~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S~~~d~~  151 (325)
                      |+|||+||++|+|||+.+|++|++||++||++++.+||++++|+||++||++|..+|++| +|++|||++|++|+++++.
T Consensus        82 ~~dIDliI~aT~tpd~~~P~tA~~Vq~~LGl~~~~~fDi~~aCsgf~~aL~~A~~~I~sG~~k~vLVV~aE~~S~~l~~~  161 (378)
T PRK06816         82 LEDVELLACGTSQGDQLMPGHAVMVHGELGNPPCEVVSFHGVCAAGMMALKYAYLSVKAGESSNAVATASELASRLFRAS  161 (378)
T ss_pred             HHHCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHCCC
T ss_conf             89999999966868987854899999981899854032110123789999999999974898879999344011210343


Q ss_pred             ------------CCCCCC---------CCCCCEEEEEECCCCCCCCC--CCEEEEEEECCCCCCEEEEECCCCCCCCC--
Q ss_conf             ------------244343---------25442001122057654445--31135532136776527830698667654--
Q gi|254780489|r  152 ------------DKDTAI---------IFGDAAGAVVLAPSPLKDKS--GILGIELTSDGSKYDLIKIPTGGSTSPAG--  206 (325)
Q Consensus       152 ------------d~~~~~---------lfGDgA~A~il~~~~~~~~~--~il~~~~~s~~~~~~~~~~~~~~~~~~~~--  206 (325)
                                  |+.+.+         +|||||+|+||++++..++.  .+....+.+++..++.|...++.......  
T Consensus       162 ~~~~~~~~~~~~d~~~~~~f~~~fl~~lfGDGAgA~vl~~~~~~~g~~~~i~~~~~~s~~~~~~~~~~~G~~~~~~~~~~  241 (378)
T PRK06816        162 RYEAEEERVEELEEGPEIAFEKDFLRWMLSDGAGAVLLENKPRPGGLSLRIDWIDLFSFADEFPVCMYAGADKNEDGELK  241 (378)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCEECCCCCCCCCCCC
T ss_conf             22321122220124410033200135555666636997643888874345431014554555663021476667787657


Q ss_pred             ---------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHC-----CCCH
Q ss_conf             ---------45565523224514543432010036789889974012001224630565413899999971-----9786
Q gi|254780489|r  207 ---------TNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKI-----GLSK  272 (325)
Q Consensus       207 ---------~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~l-----gi~~  272 (325)
                               ..........++++.+++++.+.+++.++++|+++|++++|||||+|||+|.++++.+++.|     ++|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~L~~~gl~~~dId~~vpHQAn~ri~~~v~~~l~~~g~~ip~  321 (378)
T PRK06816        242 GWSDYSPAEAEAAGALALKQDVRLLNEVIVVWGVDPYLELVDKRRLDPDAIDHFLPHYSSEYFREKIVELLAKAGLMIPE  321 (378)
T ss_pred             CCCCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEECCCCHHHHHHHHHHHHHHCCCCCCH
T ss_conf             74447877775335401112589999999999999999999984999899888812610599999999998753589986


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCC-CCCCCCCC
Q ss_conf             570021854093300059999999998067899989999986155-10201019
Q gi|254780489|r  273 RIMVNSLKDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRRG-NDRGIYCL  325 (325)
Q Consensus       273 ~~~~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G-~s~ga~lL  325 (325)
                      ||++.++++||||+|||+|++|++++++|+|||||+|||+++|+| ||||++||
T Consensus       322 ek~~~~v~~~GNT~sASiPiaL~~a~~~g~ik~Gd~vll~~~~sg~~~~g~~ll  375 (378)
T PRK06816        322 EKWFTNLATVGNTGSASIFIMLDELFRSGRLKPGQTILCFVPESGRFSAAFMLL  375 (378)
T ss_pred             HHHEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHEEEEE
T ss_conf             661601423270799999999999998499999999999962476761546999


No 12 
>PRK06840 hypothetical protein; Validated
Probab=100.00  E-value=0  Score=534.65  Aligned_cols=321  Identities=22%  Similarity=0.346  Sum_probs=291.2

Q ss_pred             CCCCEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             66620999999735886138889998809997683111475088994898879999999999986430132223442588
Q gi|254780489|r    2 IKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLL   81 (325)
Q Consensus         2 ~~~~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~   81 (325)
                      |+.+++|+|+|+|+|+++|+|+|++++++++++||.++|||++||+++++|+++|||++|+++||+++|++|+|||+||+
T Consensus         1 m~~~v~I~~~G~ylP~~~v~n~e~~~~~~~~~e~i~~rtGI~~Rr~a~~~e~~~dma~~Aa~~aL~~ag~~~~dIdliI~   80 (337)
T PRK06840          1 MKMNVGIVSTGVYLPKDVMTAEEIAKKTGIPEEVIIEKFGILEKPIPGPEDHTSDMAIAAAKPALKQAGIDPEAIDLVIY   80 (337)
T ss_pred             CCCCEEEEEEEEECCCCEECHHHHHHHCCCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEE
T ss_conf             97510999999978997366999998739987998546586168578999989999999999999974989678878999


Q ss_pred             -EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC--CCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             -431002368874322112100238633342101231012567657887438--85058862012244446222443432
Q gi|254780489|r   82 -ATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSH--QKPVLIIAANLLSRRINLEDKDTAII  158 (325)
Q Consensus        82 -~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g--~~~vLVv~~e~~S~~~d~~d~~~~~l  158 (325)
                       +|.+||+..|++|++||++||++++.+|||+++|+||++||++|..++.++  .+++|||++|..|+.+||+|+.+.++
T Consensus        81 ~~t~~~d~~~ps~A~~vq~~LG~~~a~afDi~~aC~gf~~aL~~A~~~l~a~~~~~~vLvv~~e~~s~~i~~~~~~~~~~  160 (337)
T PRK06840         81 IGEEHKDYPVWTAAPKIQHEIGAKNAWAFDIMARCGTFPVALKVAKDLMLADPNINNVLLVGGYRNSDLVDYDNPRSRFM  160 (337)
T ss_pred             EECCCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEE
T ss_conf             93689897884199999998589996078713320179999999999987165531478601432465556689885169


Q ss_pred             C--CCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCC--CCCCCCHH-----HHHHHCCC
Q ss_conf             5--442001122057654445311355321367765278306986676544556552--32245145-----43432010
Q gi|254780489|r  159 F--GDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFY--MRITNGAD-----IFYNAVKI  229 (325)
Q Consensus       159 f--GDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~-----v~~~~~~~  229 (325)
                      |  ||||+|++|++++  ++.+++++.+.|++++++.+.++.++.+.|...+..+..  ...+.+..     +...+.+.
T Consensus       161 f~~GDga~A~ll~~~~--~~~~il~~~~~tdg~~~~~~~~~~gg~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  238 (337)
T PRK06840        161 FNLGAGGSAALLKKNY--GKNRVLGSAIITDGSFSEDVRVPAGGTKQPASYETVDNRQHYLDVLDPESMKERLDPVSIPN  238 (337)
T ss_pred             EEECCCCEEEEEECCC--CCCCEEEEEECCCCCCHHCEEEECCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHH
T ss_conf             9705883479984168--88705766621257531216871387568887445345421586310388887768899988


Q ss_pred             HHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             03678988997401200122463056541389999997197865700218540933000599999999980678999899
Q gi|254780489|r  230 MAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQRKPFQKGEKI  309 (325)
Q Consensus       230 ~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~v  309 (325)
                      ++++++++|+++|++++|||||++||+|.++++.+.++||+|+||+. ++++||||++||+|++|++++++|++++||+|
T Consensus       239 ~~~~i~~~L~~~gl~~~DId~~~~hq~~~~~~~~~~~~lgi~~~k~~-~~~~~GNt~sasiplaL~~a~~~g~l~~Gd~v  317 (337)
T PRK06840        239 FYKVIREALRKSGYTPKDIDYLAILHMKRSAHIAVLEGLGLTEEQTI-YLEEYGHMGQIDQILSLHLALEQGKLKDGDLV  317 (337)
T ss_pred             HHHHHHHHHHHCCCCHHHCCEEEECCCCHHHHHHHHHHHCCCHHHEE-ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf             99999999998499957868888853379999999998299754348-60267731777899999999980999995999


Q ss_pred             EEEEECCCCCCCCCCC
Q ss_conf             9998615510201019
Q gi|254780489|r  310 LTISCRRGNDRGIYCL  325 (325)
Q Consensus       310 ll~~~G~G~s~ga~lL  325 (325)
                      +|++||+|+|||++++
T Consensus       318 ll~g~G~G~s~g~~v~  333 (337)
T PRK06840        318 VLVSAGTGYTWAATVI  333 (337)
T ss_pred             EEEEEEHHHHHEEEEE
T ss_conf             9999994521258999


No 13 
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00  E-value=0  Score=534.01  Aligned_cols=311  Identities=20%  Similarity=0.312  Sum_probs=275.9

Q ss_pred             EEEEEEEEECCCCCCCHHHHHHHH-------CCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf             099999973588613888999880-------9997683111475088994898879999999999986430132223442
Q gi|254780489|r    6 SCILGFGHAVPNQCIHNSIIERHL-------NLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISL   78 (325)
Q Consensus         6 ~~I~g~g~~lP~~~i~n~~l~~~~-------~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~   78 (325)
                      |+|+|+|+|||+++|||+|+++++       +++.+||+++|||++|||++++|+++|||++|+++||+++|++|+|||+
T Consensus         1 v~I~~~g~ylP~~~vtn~el~~~~~~~~~~~~~~~~~i~~~tGI~~Rr~a~~~e~~sdma~~Aa~~AL~~agi~p~dIDl   80 (339)
T PRK09258          1 VFINSLAYELAPVVVTSSEIESRLAPLYQRLRIPMGQLEALTGIRERRWWPKGHQLSDGATEAARKALAEAGIDASDIGL   80 (339)
T ss_pred             CEEEEEEEECCCCCCCHHHHHHHHCCCHHHHCCCCCHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCE
T ss_conf             98989998779961748999977533045425871132334673035367999988999999999999975999899999


Q ss_pred             EEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCC-----
Q ss_conf             58843100236887432211210023-8633342101231012567657887438-8505886201224444622-----
Q gi|254780489|r   79 TLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLSRRINLE-----  151 (325)
Q Consensus        79 ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S~~~d~~-----  151 (325)
                      ||++|++|||.+|++|++||++||++ ++.+|||+.+|+||++||++|..+|++| .+++|||++|..|+++|+.     
T Consensus        81 lI~at~tpd~~~P~tA~~v~~~LGl~~~~~afDi~~aCsGf~~aL~~A~~~i~sg~~~~~LvV~aE~~s~~~d~~~~~~~  160 (339)
T PRK09258         81 LINTSVCRDQLEPATACRVHAELGLSKDCAIFDISNACLGFLNGMLDAANMIELGQIDYGLVVSGESARDIVEATIARML  160 (339)
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCC
T ss_conf             99905114853781899999984799874786510431679999999999997699988999975412100244432102


Q ss_pred             -----------CCCCCCCCCCCEEEEEECCCCCCC-CCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -----------244343254420011220576544-45311355321367765278306986676544556552322451
Q gi|254780489|r  152 -----------DKDTAIIFGDAAGAVVLAPSPLKD-KSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNG  219 (325)
Q Consensus       152 -----------d~~~~~lfGDgA~A~il~~~~~~~-~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  219 (325)
                                 +....++|||||+|++|++.+..+ ...+++....+.+++++.|...   .      .........++|
T Consensus       161 ~~~~~~~~~f~~~~a~~~~GdGA~A~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~dg  231 (339)
T PRK09258        161 ADPTMTRQNFAQSLATLTLGSGAVAVVLTRGSLVPRAHRLLGGVTRAATEHHQLCQGG---L------DEAGHGLMRTDA  231 (339)
T ss_pred             CCCCCHHHHCCCCCCCEECCCCEEEEEEECCCCCCCCCEEECCCCCCCCCHHHCCCCC---C------CCCCCCCEEECH
T ss_conf             4666203330221110421662179999536778888645145545772100102478---8------878765565358


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             45434320100367898899740120012246305654138999999719786570021854093300059999999998
Q gi|254780489|r  220 ADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQ  299 (325)
Q Consensus       220 ~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~~~  299 (325)
                      +.+|+++++.+++.++++|+++|++++|||+|+|||+|.++++.++++||+|+||++.++++||||+|||+|++|+++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~L~~~gl~~~dId~~v~HQan~~~~~~i~~~Lgi~~ek~~~~~~~~GNT~sASiPlaL~~a~~  311 (339)
T PRK09258        232 VLLLKEGVELAVDTWEAFLQQLGWSVEQVDKVVCHQVGAAHTRAVLKALGIDPEKVFPTFPLLGNMGPVSLPITLAMAAE  311 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHHHHHHHHCCCCHHHHHCHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999839998998899862576999999999819687771031864586898999999999998


Q ss_pred             HCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf             06789998999998615510201019
Q gi|254780489|r  300 RKPFQKGEKILTISCRRGNDRGIYCL  325 (325)
Q Consensus       300 ~g~i~~Gd~vll~~~G~G~s~ga~lL  325 (325)
                      +|++++||+|+|++||+|++||+++|
T Consensus       312 ~g~ik~Gd~vll~~~GaGl~~~~~~~  337 (339)
T PRK09258        312 QGFLKKGDRVALLGIGSGLNCSMLGI  337 (339)
T ss_pred             CCCCCCCCEEEEEEEEHHHHHHHHEE
T ss_conf             29999979999998847876556737


No 14 
>PRK04262 hypothetical protein; Provisional
Probab=100.00  E-value=0  Score=459.91  Aligned_cols=301  Identities=22%  Similarity=0.263  Sum_probs=246.3

Q ss_pred             CEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
Q ss_conf             20999999735886138889998809997683111475088994898879999999999986430132223442588431
Q gi|254780489|r    5 SSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLATS   84 (325)
Q Consensus         5 ~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~   84 (325)
                      ++.|+|+|.|+|+++|+|+|+++.++++++||.++|||++||+++++|++++||++|+++||++++++|+|||+||++|+
T Consensus         2 ~vgI~g~G~YlP~~~v~n~el~~~~~~~~ewI~~rtGI~~R~va~~dE~t~~lA~~AA~~aL~~agi~~~dIdlIi~aT~   81 (346)
T PRK04262          2 MVGIVGYGAYIPRYRIKVEEIARVWGDDPEAIKKGLGVEEKSVPGPDEDTATIAVEAARNALKRAGIDPKEIGAVYVGSE   81 (346)
T ss_pred             CCEEEEEEEECCCEEECHHHHHHHHCCCHHHHEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEC
T ss_conf             21798999958996884999998859996473136685078778999999999999999999875999778898999647


Q ss_pred             EECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00236887432211210023-8633342101231012567657887438-850588620122444462224434325442
Q gi|254780489|r   85 TPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLSRRINLEDKDTAIIFGDA  162 (325)
Q Consensus        85 t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S~~~d~~d~~~~~lfGDg  162 (325)
                      |||+..|++|+.||++||++ ++.+||++.+|+||++||++|.+||++| .+++|||++|+.+.  ++.+.. -+..|||
T Consensus        82 Tpd~~~pstA~~vq~~LGl~~~~~afDi~aaCsGf~~aL~~A~~~I~sg~~~~~LVV~aD~~~~--~~~~~~-e~~~GaG  158 (346)
T PRK04262         82 SHPYAVKPTATIVAEALGATPDLTAADLEFACKAGTAALQAAMGLVKSGMIKYALAIGADTAQG--APGDAL-EYTAAAG  158 (346)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCEEEEEHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC--CCCCEE-EECCCCC
T ss_conf             8886676506899998389988059861022114999999999999739997699983133347--874056-6668887


Q ss_pred             EEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf             00112205765444531135532136776527830698667654455655232245145434320100367898899740
Q gi|254780489|r  163 AGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSD  242 (325)
Q Consensus       163 A~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~g  242 (325)
                      |+|++++.++...  .+......+ .+..+.++  ..+...|...      .+ ..+...   ..+.+++.++++|+++|
T Consensus       159 a~A~~~g~~~~~~--~~~~~~~~~-~~~~d~~r--~~~~~~~~~~------~~-~~~~~~---~~~~~~~~~~~~l~~~g  223 (346)
T PRK04262        159 GAAFIIGAEEVIA--EIEATYSYV-TDTPDFWR--REGEPYPRHG------ER-FTGEPA---YFKHIISAAKGLMEKLG  223 (346)
T ss_pred             EEEEEECCCCCCE--EECCCCCCC-CCCCCCCC--CCCCCCCCCC------CC-EECCEE---HHHHHHHHHHHHHHHCC
T ss_conf             6999987799733--745633445-78742205--6998242307------71-625232---79999999999999829


Q ss_pred             CCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHH--HHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf             1200122463056541389999997197865700218--54093300059999999998067899989999986155102
Q gi|254780489|r  243 LQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSL--KDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRRGNDR  320 (325)
Q Consensus       243 l~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l--~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s~  320 (325)
                      ++++|||||||||+|.+|++.++++||+|+||++.++  ++||||++||||++|.++++++  +|||+|+|++||+|...
T Consensus       224 ~~~~did~~v~HQAn~rii~~~~k~Lgi~~ekv~~nl~~~~~GNTssASiplaL~~~l~~~--k~Gd~Ill~~fG~G~~~  301 (346)
T PRK04262        224 TKPSDYDYAVFHQPNGKFPLRAAKMLGFTKEQVKPGLLTPYIGNTYSASALLGLAAVLDVA--KPGDRILVVSFGSGAGS  301 (346)
T ss_pred             CCHHHCCEEECCCCCHHHHHHHHHHCCCCHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHCC--CCCCEEEEEEECCCCCE
T ss_conf             9978858895167657899999998299989922342177647750336999999998438--99899999985697313


Q ss_pred             CCCCC
Q ss_conf             01019
Q gi|254780489|r  321 GIYCL  325 (325)
Q Consensus       321 ga~lL  325 (325)
                      -+++|
T Consensus       302 ~~~~~  306 (346)
T PRK04262        302 DAFSI  306 (346)
T ss_pred             EEEEE
T ss_conf             68999


No 15 
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=100.00  E-value=0  Score=453.16  Aligned_cols=317  Identities=26%  Similarity=0.334  Sum_probs=272.5

Q ss_pred             CEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
Q ss_conf             20999999735886138889998809997683111475088994898879999999999986430132223442588431
Q gi|254780489|r    5 SSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLATS   84 (325)
Q Consensus         5 ~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~   84 (325)
                      +++|.|+|+|+|+++|+|+|+++.++.+  ++.+++||++||++.++|++.+|+++|+|+||++++++|+|||+||++|+
T Consensus         1 ~v~I~~~g~y~P~~~v~~~~~~~~~~~~--~~~~~~Gi~~r~~a~~~e~~~~ma~~Aa~~aL~~a~~~~~~Idlli~~s~   78 (324)
T cd00827           1 DVGIEAIGAYLPRYRVDNEELAEGLGVD--PGKYTTGIGQRHMAGDDEDVPTMAVEAARRALERAGIDPDDIGLLIVATE   78 (324)
T ss_pred             CCCEEEEEEECCCCEECHHHHHHHHCCH--HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEECC
T ss_conf             9368799997899479599999884952--76502470389967999999999999999999984989889979999325


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             002368874322112100238633342101231012567657887438-8505886201224444622244343254420
Q gi|254780489|r   85 TPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLSRRINLEDKDTAIIFGDAA  163 (325)
Q Consensus        85 t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S~~~d~~d~~~~~lfGDgA  163 (325)
                      +|++..|++|++||++||++++.+||++++|+|+++||++|.+++++| .+++|||++|++|+.+++.++ ..++|||||
T Consensus        79 ~~~~~~p~~a~~i~~~Lgl~~~~~~di~~~C~g~~~aL~~A~~~l~~g~~~~~LVv~~e~~s~~~~~~~~-~~~~~GDgA  157 (324)
T cd00827          79 SPIDKGKSAATYLAELLGLTNAEAFDLKQACYGGTAALQLAANLVESGPWRYALVVASDIASYLLDEGSA-LEPTLGDGA  157 (324)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCCCCCC-CCCCCCCCC
T ss_conf             7786797499999998589997188601422047999999998875487651478740110124677987-664457722


Q ss_pred             EEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCC-CCCCCHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf             011220576544453113553213677652783069866765445565523-2245145434320100367898899740
Q gi|254780489|r  164 GAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYM-RITNGADIFYNAVKIMAQSAKQSLRKSD  242 (325)
Q Consensus       164 ~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~v~~~~~~~~~~~i~~~l~~~g  242 (325)
                      +|+||++++.....+++.....+++..+.......++...+.........+ ....+..+++...+.+++.++++|++.+
T Consensus       158 aA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  237 (324)
T cd00827         158 AAMLVSRNPGILAAGIVSTHSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTAEPAGRAVFEAAHKLIAKVVRKALDRAG  237 (324)
T ss_pred             EEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             89998227865555403677501566544444567888777543210022224441789999999999999999999849


Q ss_pred             CCCCCCCEEEECCCCC-HHHHHHHHHCCCCHHHH----HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCC
Q ss_conf             1200122463056541-38999999719786570----021854093300059999999998067899989999986155
Q gi|254780489|r  243 LQPQDINRFIPHQANS-RIIQKVCEKIGLSKRIM----VNSLKDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRRG  317 (325)
Q Consensus       243 l~~~did~~i~Hq~~~-~~~~~~~~~lgi~~~~~----~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G  317 (325)
                      ++ +|+++|++||+|. ++++.++++|+++.++.    +.++++||||++||+|++|+++++++++++||+|+++++|+|
T Consensus       238 ~~-~~~~~~~~hq~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~Gn~~sasi~~~L~~~l~~g~l~~Gd~vll~~~G~G  316 (324)
T cd00827         238 LS-EDIDYFVPHQPNGKKILEAVAKKLGGPPEKASQTRWILLRRVGNMYAASILLGLASLLESGKLKAGDRVLLFSYGSG  316 (324)
T ss_pred             CC-HHHHHEEECCCCHHHHHHHHHHHCCCCHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHH
T ss_conf             97-54412432576378999999998399656513516465168414489899999999997299998499999999068


Q ss_pred             CCCCCCCC
Q ss_conf             10201019
Q gi|254780489|r  318 NDRGIYCL  325 (325)
Q Consensus       318 ~s~ga~lL  325 (325)
                      ++||+++|
T Consensus       317 ~s~~~~vl  324 (324)
T cd00827         317 FTAEAFVL  324 (324)
T ss_pred             HHHHHECC
T ss_conf             31551119


No 16 
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=100.00  E-value=0  Score=445.44  Aligned_cols=314  Identities=22%  Similarity=0.269  Sum_probs=257.4

Q ss_pred             CEEEEEEEEECCCCCCCHHHHHHHHCC------------CHHHEEECCCCCEEEEECCC---------------------
Q ss_conf             209999997358861388899988099------------97683111475088994898---------------------
Q gi|254780489|r    5 SSCILGFGHAVPNQCIHNSIIERHLNL------------KLGVIEQKTGIKYRYWAEKH---------------------   51 (325)
Q Consensus         5 ~~~I~g~g~~lP~~~i~n~~l~~~~~~------------~~~~i~~~tGI~~R~~~~~~---------------------   51 (325)
                      .++|+|+|+|+|+++++|+++.+.+..            ...||.+++||++||++.++                     
T Consensus         1 ~A~I~gigt~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tgI~~R~~~~~~~~~~~~~~~~~~~~~~~r~~~   80 (361)
T cd00831           1 AATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRLCAKTGIETRYLVLPGGEETYAPRPEMSPSLDERNDI   80 (361)
T ss_pred             CEEEEEEEEECCCEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHH
T ss_conf             91999988777992675999999998744333435678999999972698615555266122024565558887888777


Q ss_pred             --CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCC-CCCCCCHHHHHHHHH
Q ss_conf             --87999999999998643013222344258843100236887432211210023-86333421-012310125676578
Q gi|254780489|r   52 --ETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLT-GACAGFLYALVMADS  127 (325)
Q Consensus        52 --e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~-~~C~g~l~aL~~A~~  127 (325)
                        |...+|+++|+++||+++|++|+|||+||++|+| ++..|+++++|+++||++ ++..||++ +||+||++||++|.+
T Consensus        81 ~~~~~~~la~~Aa~~AL~~ag~~~~dId~lI~~Tst-~~~~Ps~a~~v~~~LGl~~~~~~~dl~~~gCsg~~~aL~~A~~  159 (361)
T cd00831          81 ALEEARELAEEAARGALDEAGLRPSDIDHLVVNTST-GNPTPSLDAMLINRLGLRPDVKRYNLGGMGCSAGAIALDLAKD  159 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCC-CCCCCCHHHHHHHHHCCCCCHHEEECCCCCCHHHHHHHHHHHH
T ss_conf             998999999999999999819898999999998659-9998976999999738998700355646755689999999999


Q ss_pred             HHHCC-CCEEEEEEECCCCCCCCCCCCC----CCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCC
Q ss_conf             87438-8505886201224444622244----343254420011220576544453113553213677652783069866
Q gi|254780489|r  128 YINSH-QKPVLIIAANLLSRRINLEDKD----TAIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGST  202 (325)
Q Consensus       128 ~i~~g-~~~vLVv~~e~~S~~~d~~d~~----~~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~  202 (325)
                      ++++| .+++|||++|.+|+++++.|+.    +..+|||||+|+||+..+..........  .....  ....+|.....
T Consensus       160 ~i~~g~~~~vLVV~~E~~S~~~~~~d~~~~~v~~~LFGDGA~A~vl~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~  235 (361)
T cd00831         160 LLEANPGARVLVVSTELCSLWYRGPDHRSMLVGNALFGDGAAAVLLSNDPRDRRRERPLF--ELVRA--ASTLLPDSEDA  235 (361)
T ss_pred             HHHHCCCCEEEEEEEEECCEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEE--EECCC--CCCCCCCCCCC
T ss_conf             998299976999961211202068875777554200047725899842676665666526--88377--76124688876


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH--CCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHH---H
Q ss_conf             765445565523224514543432010036789889974--01200122463056541389999997197865700---2
Q gi|254780489|r  203 SPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKS--DLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMV---N  277 (325)
Q Consensus       203 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~--gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~---~  277 (325)
                      ....  ..+..+.+..++++++...+.+++.+++++++.  ++...|||+|++||+|+++++.++++||+|++|+.   .
T Consensus       236 ~~~~--~~~~g~~~~l~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~di~~~~~Hq~~~~Ii~~v~~~Lgl~~~~~~~s~~  313 (361)
T cd00831         236 MGWH--LGEEGLTFVLSRDVPRLVEKNLERVLRKLLARLGIGLFKLAFDHWCVHPGGRAVLDAVEKALGLSPEDLEASRM  313 (361)
T ss_pred             CCCC--CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             6665--05775378506369999999999999999998258999677255887878689999999982989688325787


Q ss_pred             HHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf             185409330005999999999806789998999998615510201019
Q gi|254780489|r  278 SLKDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRRGNDRGIYCL  325 (325)
Q Consensus       278 ~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s~ga~lL  325 (325)
                      ++.+||||+|||||++|+++++++++++||+|++++||+|+|||++++
T Consensus       314 ~l~~~GNtsSaSip~~L~~~~~~~~~~~Gd~vl~~afG~Glt~~~~v~  361 (361)
T cd00831         314 VLRRYGNMSSSSVLYVLAYMEAKGRVKRGDRGLLIAFGPGFTCESAVW  361 (361)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHEEEEECC
T ss_conf             898638539889999999999739999999899999810405531209


No 17 
>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]
Probab=100.00  E-value=2.1e-42  Score=297.04  Aligned_cols=300  Identities=21%  Similarity=0.254  Sum_probs=242.8

Q ss_pred             CCEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf             62099999973588613888999880999768311147508899489887999999999998643013222344258843
Q gi|254780489|r    4 SSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLAT   83 (325)
Q Consensus         4 ~~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s   83 (325)
                      +.+.|.++|.|+|.++|+.+|+++..+..++++.+-+|+++|.+.+++|+..+||++|+|++|.++++||++|++|+++|
T Consensus         1 ~~iGI~~~g~y~p~~~i~~~ela~~~g~d~~k~~~gl~~~e~sv~~~~ED~vTmaveAA~~~l~r~~~D~~~Ig~v~vgT   80 (377)
T COG3425           1 MMIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARNALKRADIDPSKIGAVIVGS   80 (377)
T ss_pred             CCCCCCEEEEECCCEEEEHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEC
T ss_conf             95551238885662386099997632888377653004234467997420899999999998751388988966699953


Q ss_pred             EEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             100236887432211210023-86333421012310125676578874388-5058862012244446222443432544
Q gi|254780489|r   84 STPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSYINSHQ-KPVLIIAANLLSRRINLEDKDTAIIFGD  161 (325)
Q Consensus        84 ~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~i~~g~-~~vLVv~~e~~S~~~d~~d~~~~~lfGD  161 (325)
                      .++.+...+++.+|++.||+. ++.++|+..+|.+++.||+.|.+++.++. +++|||++|+.-.  .+.+. --.+.|+
T Consensus        81 ES~~d~~K~~at~v~~~lg~~~~~~~~d~~~AC~agT~aL~~a~~~v~s~~~~~~LvI~sD~a~~--~~~~~-~E~t~GA  157 (377)
T COG3425          81 ESGPDAVKPTATIVAEALGLNPSARAADVEFACYAGTAALQAAIGWVESGMISYGLVIGADTAQY--APGDA-LEYTAGA  157 (377)
T ss_pred             CCCCCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCC--CCCCC-CCCCCCC
T ss_conf             77765444058999998389975120567878998899999999999728755417996311035--88865-6766778


Q ss_pred             CEEEEEECCCCCCCCCCCEEEEEEECCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             2001122057654445311355321367-765278306986676544556552322451454343201003678988997
Q gi|254780489|r  162 AAGAVVLAPSPLKDKSGILGIELTSDGS-KYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRK  240 (325)
Q Consensus       162 gA~A~il~~~~~~~~~~il~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~  240 (325)
                      ||+|+|+++.+..   -.......+..+ ..|+        ..|.+....     ..+|+.-.+...+.+..+.++++++
T Consensus       158 GavA~lIg~n~~~---~a~~~~~~syt~d~~DF--------wRp~~~~yp-----~~dg~~s~~~Y~~~~~~a~~~~~~k  221 (377)
T COG3425         158 GAVAFLIGKNPPI---VAEFEGTGSYTTDTPDF--------WRPDGQPYP-----YVDGRFSEPAYFKHVENAAKGYMEK  221 (377)
T ss_pred             CEEEEEEECCCCE---EEEECCCEEEECCCCCC--------CCCCCCCCC-----CCCCEECHHHHHHHHHHHHHHHHHH
T ss_conf             6089998069872---78724756774577761--------466898466-----4076355899999999999999998


Q ss_pred             HCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH---HHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCC
Q ss_conf             40120012246305654138999999719786570021---854093300059999999998067899989999986155
Q gi|254780489|r  241 SDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS---LKDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRRG  317 (325)
Q Consensus       241 ~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~---l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G  317 (325)
                      .|++++|+|++++||++.+|-...++.++++++++-..   .++.||+.++|+++.|..+++... ++||+|+++++|+|
T Consensus       222 ~gls~~dfdy~vfH~P~~k~~~ka~k~l~~~~e~v~~~l~~~~~vGN~YtgS~~L~Las~Ld~a~-~~G~rIl~~SYGSG  300 (377)
T COG3425         222 TGLSPDDFDYIVFHQPNGKFPKKAAKSLGFKEEQVKPGLVYPQRIGNTYTGSLLLGLASLLDNAK-LPGDRILLFSYGSG  300 (377)
T ss_pred             HCCCHHHHCEEEECCCCCCHHHHHHHHHCCCHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCC-CCCCEEEEEEECCC
T ss_conf             38984550759831798724899999857347662843011665275111069999999985267-88887999960788


Q ss_pred             CCCCCC
Q ss_conf             102010
Q gi|254780489|r  318 NDRGIY  323 (325)
Q Consensus       318 ~s~ga~  323 (325)
                      ...-++
T Consensus       301 a~s~~f  306 (377)
T COG3425         301 AGSEAF  306 (377)
T ss_pred             CCEEEE
T ss_conf             525678


No 18 
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00  E-value=4.7e-41  Score=288.20  Aligned_cols=311  Identities=22%  Similarity=0.243  Sum_probs=241.8

Q ss_pred             EEEEEEEEECCCCCCCHHHHHHHH----CC-CHHHE----EECCCCCEEEEECCC-----------------CCHHHHHH
Q ss_conf             099999973588613888999880----99-97683----111475088994898-----------------87999999
Q gi|254780489|r    6 SCILGFGHAVPNQCIHNSIIERHL----NL-KLGVI----EQKTGIKYRYWAEKH-----------------ETLTDIAI   59 (325)
Q Consensus         6 ~~I~g~g~~lP~~~i~n~~l~~~~----~~-~~~~i----~~~tGI~~R~~~~~~-----------------e~~~~la~   59 (325)
                      ++|.|+++++|++.+.+.|+...+    .. ..+.|    ....+|++||.+.|.                 |.+..+++
T Consensus         2 a~i~sv~t~~Ppy~~~Qse~~d~f~~~~~~~~~~~I~r~l~~~~~i~~R~~v~Pl~~y~e~~~f~ekN~ifie~a~~l~v   81 (356)
T COG3424           2 AVIASVATALPPYRYNQSEITDSFAELPFQEGREDIPRVLHANAQINRRHLVLPLDWYREPHGFGEKNEIFIEEAVPLGV   81 (356)
T ss_pred             CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEECCCHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             25400005799643566788999987315222678899986533625121226276641788756630349998799999


Q ss_pred             HHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC-CCCCCC-CCCCCCCHHHHHHHHHHHHCC-CCEE
Q ss_conf             9999986430132223442588431002368874322112100238-633342-101231012567657887438-8505
Q gi|254780489|r   60 QAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQ-SGAIDL-TGACAGFLYALVMADSYINSH-QKPV  136 (325)
Q Consensus        60 ~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~-~~~~di-~~~C~g~l~aL~~A~~~i~~g-~~~v  136 (325)
                      +|.|+||+.+++.|+|||+|+++|+|+ ...|+..++|.++||++. +.-+-+ -.||.++..+|..|.+|++++ ..++
T Consensus        82 ~a~r~aL~~~~l~pedId~vv~vtsTG-~~~Ps~dari~~~Lgl~p~~~Rvpv~glGCaaga~glara~~y~ra~P~~~v  160 (356)
T COG3424          82 DALRRALDGSPLRPEDIDAVVTVTSTG-LATPSLDARIVGELGLSPDTRRVPVWGLGCAAGAAGLARARDYCRAAPDANV  160 (356)
T ss_pred             HHHHHHHCCCCCCHHHCCEEEEEEECC-CCCCCHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             999988526999977886799995025-5478754998861399976405220032014211578999999750866508


Q ss_pred             EEEEECCCCCCCCCCCCCC-----CCCCCCCEEEEEECCCCCCCCCCCEEEE-EEECCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             8862012244446222443-----4325442001122057654445311355-321367765278306986676544556
Q gi|254780489|r  137 LIIAANLLSRRINLEDKDT-----AIIFGDAAGAVVLAPSPLKDKSGILGIE-LTSDGSKYDLIKIPTGGSTSPAGTNTH  210 (325)
Q Consensus       137 LVv~~e~~S~~~d~~d~~~-----~~lfGDgA~A~il~~~~~~~~~~il~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~  210 (325)
                      ||||.|.||-.+...|+..     .-+||||++|+|++.+...++...+... +.+.+.       ....+.+.-+.+..
T Consensus       161 lvV~vELCSLt~~~~d~t~s~lVgtaLF~DG~AA~vv~gd~~~~~~~~~~p~i~~s~St-------L~~dse~~Mgwdv~  233 (356)
T COG3424         161 LVVCVELCSLTYVFADDTKSNLVGTALFGDGAAAVVVSGDRRAEGKRPLRPDILDSFST-------LYPDSEDIMGWDVG  233 (356)
T ss_pred             EEEEEEEEEEEEECCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCEECCCCCC-------CCCCCCCCCCEEEC
T ss_conf             99994632155434788754513333004870589983464334667897500045454-------68862100115304


Q ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHH---HHHHHHHCCCCCC
Q ss_conf             5523224514543432010036789889974012001224630565413899999971978657---0021854093300
Q gi|254780489|r  211 DFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRI---MVNSLKDFGNSSS  287 (325)
Q Consensus       211 ~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~---~~~~l~~~GN~~s  287 (325)
                      +..+...-.+++....-+++...+..+|..++++.+||+.|+.|+++++++++..+.||+++++   .+..|.+|||++|
T Consensus       234 d~G~~~vlSrdlp~lIe~~l~~~V~~fL~~~~ls~~dI~~w~~HPGG~KVida~~~sLgls~e~l~~s~~~L~~~GNMSS  313 (356)
T COG3424         234 DQGLKVVLSRDLPNLIESYLAPNVTTFLATHGLSIEDIEAWVVHPGGPKVIDAYEESLGLSPEALELSWDVLREYGNMSS  313 (356)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             88479997573268999985255899999768766541115557997069999987618998899999999998278652


Q ss_pred             CHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf             05999999999806789998999998615510201019
Q gi|254780489|r  288 ASIPLSLSLENQRKPFQKGEKILTISCRRGNDRGIYCL  325 (325)
Q Consensus       288 Asi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s~ga~lL  325 (325)
                      |++++.|.+.+++. -++|++.++.++|+||+...+||
T Consensus       314 atvLfVL~d~l~~~-~~~g~~Gl~~A~GPGf~sElvL~  350 (356)
T COG3424         314 ATVLFVLEDTLQKA-PKSGSRGLMFAMGPGFCSELVLL  350 (356)
T ss_pred             HHHHHHHHHHHHHC-CCCCCCEEEEECCCCCEEEEEEE
T ss_conf             10299999999736-88776303453278632224457


No 19 
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=100.00  E-value=5.7e-39  Score=274.59  Aligned_cols=239  Identities=20%  Similarity=0.219  Sum_probs=194.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             89887999999999998643013222344258843100236887432211210023863334210123101256765788
Q gi|254780489|r   49 EKHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        49 ~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .++++.++|+++|+++||++||++++|||.||++|++||+..|+.+++|+.+||+++.++|||+.+|+|+++||.+|.++
T Consensus         2 ~~g~~~s~la~~Aa~~Al~dAGi~~~~i~~viv~t~t~~~~~p~~a~~v~~~lgl~~~p~~~v~~aCss~~~Al~~A~~~   81 (254)
T cd00327           2 GLGITASELGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGISGGPAYSVNQACATGLTALALAVQQ   81 (254)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCHHHCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHH
T ss_conf             98844999999999999998299854688999999787502247999999982999988066120243777999999999


Q ss_pred             HHCC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC-EEEEEEECCCCCCEEEEECCCCCCCCC
Q ss_conf             7438-85058862012244446222443432544200112205765444531-135532136776527830698667654
Q gi|254780489|r  129 INSH-QKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAVVLAPSPLKDKSGI-LGIELTSDGSKYDLIKIPTGGSTSPAG  206 (325)
Q Consensus       129 i~~g-~~~vLVv~~e~~S~~~d~~d~~~~~lfGDgA~A~il~~~~~~~~~~i-l~~~~~s~~~~~~~~~~~~~~~~~~~~  206 (325)
                      |++| .+++||+++|.             ++|||||+|++|++.+...+.+. ....+            ...+.... +
T Consensus        82 i~~G~~~~vlv~g~e~-------------~~~gdGAga~vl~~~~~a~~~~~~~~~~i------------~~~~~~~~-g  135 (254)
T cd00327          82 VQNGKADIVLAGGSEE-------------FVFGDGAAAAVVESEEHALRRGAHPQAEI------------VSTAATFD-G  135 (254)
T ss_pred             HHHCCCCEEEECCCEE-------------EEECCCCEEEEECCHHHHHCCCCCEEEEE------------ECCCCCCC-C
T ss_conf             9958999899738768-------------87067608887302456653898514778------------51312346-9


Q ss_pred             CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHH-----HHHHHHH
Q ss_conf             45565523224514543432010036789889974012001224630565413899999971978657-----0021854
Q gi|254780489|r  207 TNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRI-----MVNSLKD  281 (325)
Q Consensus       207 ~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~-----~~~~l~~  281 (325)
                                  ...++....+.+.++++++|+++|++++||||+.+||.|.++.+.+.+++.++.++     +..+..+
T Consensus       136 ------------~~~~~~p~~~~~~~~i~~al~~agl~~~dId~v~~H~tgt~i~D~iE~~a~~~~~~~~~~~i~s~k~~  203 (254)
T cd00327         136 ------------ASMVPAVSGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPDGVRSPAVSATLIM  203 (254)
T ss_pred             ------------CCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             ------------98662788789999999999983998645257997888783545999986534006998870674014


Q ss_pred             CCCCCCCHHHHHHHHHH---HHCCCC----CCCEEEEEEECCCCCCCCCCC
Q ss_conf             09330005999999999---806789----998999998615510201019
Q gi|254780489|r  282 FGNSSSASIPLSLSLEN---QRKPFQ----KGEKILTISCRRGNDRGIYCL  325 (325)
Q Consensus       282 ~GN~~sAsi~~~L~~~~---~~g~i~----~Gd~vll~~~G~G~s~ga~lL  325 (325)
                      ||||.+|+.++.|.+.+   +.+.++    +++++++.+||.|.+|++++|
T Consensus       204 ~GH~~~Asg~~~l~~~~l~l~~~~ippt~~~~~~~~~~~fG~Ggt~~~~vl  254 (254)
T cd00327         204 TGHPLGAAGLAILDELLLMLEHEFIPPTPREPRTVLLLGFGLGGTNAAVVL  254 (254)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEEEEC
T ss_conf             154299999999999999985598697899999999957564711057869


No 20 
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative; InterPro: IPR004656   This family of archaeal proteins shows considerable homology and identical active site residues to FabH, the beta-ketoacyl-acyl carrier protein synthase III of bacteria and plants. The archaeal species in which it is found, however, do not have a readily detectable homolog of acyl carrier protein itself, suggesting the condensation of the acyl group with some other carrier. In Methanococcus jannaschii, Q58941 from SWISSPROT, Cys-112 is the site of acyl group attachment and His-234 and Asn-237 are also active site residues by homology to FabH.   Closely related bacterial families include a polyketide antibiotic (2,4-diacetylphloroglucinol) biosynthesis protein from Pseudomonas fluorescens and an uncharacterised protein from Staphylococcus carnosus. .
Probab=99.98  E-value=3.5e-32  Score=230.22  Aligned_cols=300  Identities=21%  Similarity=0.249  Sum_probs=238.4

Q ss_pred             EEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEE
Q ss_conf             09999997358861388899988099976831114750889948988799999999999864301322234425884310
Q gi|254780489|r    6 SCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLATST   85 (325)
Q Consensus         6 ~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t   85 (325)
                      +.|+|.|.|+|.++|.++|+.+.|+..++.|.+..-|+++.+...||++.+++++|+|+||+++.+||.||..|.++|.+
T Consensus         2 ~GivGyG~y~P~yri~~eei~rvW~~dp~~i~~g~~~~ek~vP~~ded~~ti~~eaarnal~r~~idP~~i~a~~~Gses   81 (347)
T TIGR00748         2 AGIVGYGAYIPKYRIKVEEIARVWGDDPEAISKGLLVEEKAVPGLDEDTATIAVEAARNALKRAKIDPKDIGAVYVGSES   81 (347)
T ss_pred             CCEEEECCCCCCEEECHHHHHHHHCCCHHHHHCCEEEEECCCCCCCCCCEEEHHHHHHHHHHHCCCCHHHCCEEEECCCC
T ss_conf             41576210115311102344433056636865570255324788663400111467787776304784164177960568


Q ss_pred             ECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             0236887432211210023-8633342101231012567657887438-8505886201224444622244343254420
Q gi|254780489|r   86 PDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLSRRINLEDKDTAIIFGDAA  163 (325)
Q Consensus        86 ~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S~~~d~~d~~~~~lfGDgA  163 (325)
                      .+|...+++..|++.+++. +..+-|+..+|..+..+|+.+..++.+| .|+.|-|++|+..  -.|.|... ++-+-|+
T Consensus        82 ~PyavkP~~t~~aea~~atP~l~aad~efaCkaGt~~~q~~~G~v~sG~~ky~la~Gadtaq--G~PGd~le-~ta~aGG  158 (347)
T TIGR00748        82 KPYAVKPTATIVAEAIEATPDLTAADLEFACKAGTAGIQACIGLVESGLIKYGLAIGADTAQ--GAPGDALE-YTAAAGG  158 (347)
T ss_pred             CCCEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCE-ECCCCCC
T ss_conf             65100640355544540575740221355555216889988756764466655431241026--89863100-0003785


Q ss_pred             EEEEECCCCCCCCCCCEEE-EEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf             0112205765444531135-532136776527830698667654455655232245145434320100367898899740
Q gi|254780489|r  164 GAVVLAPSPLKDKSGILGI-ELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSD  242 (325)
Q Consensus       164 ~A~il~~~~~~~~~~il~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~g  242 (325)
                      +|.+++.....--..+-.+ .+.||.  .|+++      +  .+..-.+..-+++..+.-|++.    ....+.++++.|
T Consensus       159 aa~~iG~~~~~~~a~~~~~ysy~tdt--Pdf~r------r--~~~~yPrhG~rftGePayf~hv----~~aa~~lm~~~G  224 (347)
T TIGR00748       159 AAYIIGEKNSEVVAEFEGTYSYTTDT--PDFWR------R--EGKPYPRHGGRFTGEPAYFKHV----VTAAKGLMEKLG  224 (347)
T ss_pred             EEEEECCCCHHHHHHHHCCEEEEECC--CHHHH------H--CCCCCCCCCCCCCCCHHHHHHH----HHHHHHHHHHHC
T ss_conf             26886075122343110332242068--15664------0--6787887787546763789999----999999999727


Q ss_pred             CCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH-H-HHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf             120012246305654138999999719786570021-8-54093300059999999998067899989999986155102
Q gi|254780489|r  243 LQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS-L-KDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRRGNDR  320 (325)
Q Consensus       243 l~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~-l-~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s~  320 (325)
                      ++++|+||.++||+|.++.-..++.||++.|+...- | ...|||.|...++.|...++.  .++|++||.+++|+|..+
T Consensus       225 ~~~~d~dy~vfhqPn~kf~~~~a~~lG~~~e~~~~Gll~~~iGntysGa~~~G~~~~ld~--~~~G~ril~vs~GsGaGs  302 (347)
T TIGR00748       225 LKPEDFDYAVFHQPNGKFYLKAARILGFKKEQVKPGLLTPVIGNTYSGATPVGLSAVLDV--AEPGERILAVSYGSGAGS  302 (347)
T ss_pred             CCCCCCCEEEEECCCCCEEEEEHHHHCCCHHCEECCCCCCCCCCCCCCHHHHHHHHHHHC--CCCCCEEEEEEECCCCCC
T ss_conf             882314147875587504441123407510100001012333543233145546777530--478864899960677675


Q ss_pred             CCCC
Q ss_conf             0101
Q gi|254780489|r  321 GIYC  324 (325)
Q Consensus       321 ga~l  324 (325)
                      .++.
T Consensus       303 daf~  306 (347)
T TIGR00748       303 DAFS  306 (347)
T ss_pred             CEEE
T ss_conf             3367


No 21 
>TIGR01835 HMG-CoA-S_prok hydroxymethylglutaryl-CoA synthase; InterPro: IPR011554   Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase.    Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA .   HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria . In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi . In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes , .   This entry represents HMG-CoA synthase enzymes found in a limited spectrum of mostly Gram-positive bacteria, which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway..
Probab=99.96  E-value=5.2e-30  Score=216.00  Aligned_cols=297  Identities=18%  Similarity=0.193  Sum_probs=229.6

Q ss_pred             EEEEEEEECCCCCCCHHHHHH-----HHCCCHHHEEECCC---CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf             999999735886138889998-----80999768311147---5088994898879999999999986430132223442
Q gi|254780489|r    7 CILGFGHAVPNQCIHNSIIER-----HLNLKLGVIEQKTG---IKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISL   78 (325)
Q Consensus         7 ~I~g~g~~lP~~~i~n~~l~~-----~~~~~~~~i~~~tG---I~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~   78 (325)
                      .|-.++.|+|.+.++=++|++     .-|..++|+.+.+|   -++=.+.+.+|+..+||..|++.=|++.+++.++||+
T Consensus         2 GI~~I~F~~p~~yl~~~~LAEnPLYF~~gv~p~K~~~GIgatLQ~~~~~~~~~eDiVTmAA~Aa~~Il~~~nLd~~~Id~   81 (412)
T TIGR01835         2 GIDKISFFTPQYYLDLTALAENPLYFARGVDPEKFSKGIGATLQKKMAVPPIDEDIVTMAASAAKPILDRNNLDKQKIDM   81 (412)
T ss_pred             CCCHHHHHCCCCCCCHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf             70112344030003535663041145417664357577436777650689788645788999999743242068442347


Q ss_pred             EEEEEEEECCCCCCCCCCCCCCCCCC-CCC-----CCCCCCCCCCCHHHHHHHHHHHHCC-C-CEEEEEEECCCCCCCCC
Q ss_conf             58843100236887432211210023-863-----3342101231012567657887438-8-50588620122444462
Q gi|254780489|r   79 TLLATSTPDHLLPPSSPLITHRLGLM-QSG-----AIDLTGACAGFLYALVMADSYINSH-Q-KPVLIIAANLLSRRINL  150 (325)
Q Consensus        79 ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~-----~~di~~~C~g~l~aL~~A~~~i~~g-~-~~vLVv~~e~~S~~~d~  150 (325)
                      ||++|.|.-....+.|..|+..||+. .|.     +|+|..||.|.+.||+.|...++-. . ++||||++|+.--.++-
T Consensus        82 Vi~gTESgID~SKAaavyvh~LLgl~p~cRGnnFL~~ElK~ACYGATAaLq~A~~hv~~~P~s~kVLViaSDiAkY~~~t  161 (412)
T TIGR01835        82 VIFGTESGIDQSKAAAVYVHGLLGLQPFCRGNNFLSFELKQACYGATAALQMAKGHVARSPNSRKVLVIASDIAKYGLET  161 (412)
T ss_pred             EEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCC
T ss_conf             89751052668999999999982778431045422432777779999999999999851888660168886311227798


Q ss_pred             CCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCH
Q ss_conf             22443432544200112205765444531135532136776527830698667654455655232245145434320100
Q gi|254780489|r  151 EDKDTAIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIM  230 (325)
Q Consensus       151 ~d~~~~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~  230 (325)
                      .-..   +=|-||+|+||+.+|.     ++.....+-|    .++-+-....+|.....     -+.+|+.=-+..+..+
T Consensus       162 ~GE~---TQGAGAVA~Li~~dP~-----~l~i~~~~~G----~~T~DimDFWRP~y~~~-----a~VdG~~S~~~Yl~a~  224 (412)
T TIGR01835       162 PGEA---TQGAGAVAMLISADPK-----LLAINEDSVG----LYTDDIMDFWRPNYSTT-----ALVDGQYSTEQYLNAL  224 (412)
T ss_pred             CCCC---CHHHHHHHHHHHCCCH-----HHHCCCCCCC----EECCCCCCCCCCCCCCC-----CEECCCHHHHHHHHHH
T ss_conf             9886---1668999998741801-----2001587653----12133121217898855-----3164604688999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCE---EEECCCCCHHHH-HHHHHC---CCCHH--HH-------HHHHH------HCCCCCCC
Q ss_conf             36789889974012001224---630565413899-999971---97865--70-------02185------40933000
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINR---FIPHQANSRIIQ-KVCEKI---GLSKR--IM-------VNSLK------DFGNSSSA  288 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~---~i~Hq~~~~~~~-~~~~~l---gi~~~--~~-------~~~l~------~~GN~~sA  288 (325)
                      .++.++.-++.|++.+|++.   |++|+|-.||-. ++...|   .-+.+  ++       +.=-+      +.||+.++
T Consensus       225 ~~aW~dy~~~~~~~l~DfaanYR~~fH~PftKMg~Ka~~~~l~~~~~~~~k~~~~~~y~~Si~Y~~Gveaam~vGN~YTG  304 (412)
T TIGR01835       225 EEAWNDYKERTGLSLEDFAANYRFCFHVPFTKMGLKALRHILKKNKEDEDKDSVQKAYEESILYNRGVEAAMEVGNLYTG  304 (412)
T ss_pred             HHHHHHHHHHCCCCHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             99999999723897567531571787078742037999998740478126899999875336785234433330541378


Q ss_pred             HHHHHHHHHHHHC---CCCCCCEEEEEEECCCCCC
Q ss_conf             5999999999806---7899989999986155102
Q gi|254780489|r  289 SIPLSLSLENQRK---PFQKGEKILTISCRRGNDR  320 (325)
Q Consensus       289 si~~~L~~~~~~g---~i~~Gd~vll~~~G~G~s~  320 (325)
                      |++++|.-++|+-   .+..|++|.|+|.|||-..
T Consensus       305 SlyLgL~sLLena~sk~d~tG~~Igl~SYGSGava  339 (412)
T TIGR01835       305 SLYLGLASLLENAQSKEDLTGDKIGLFSYGSGAVA  339 (412)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEE
T ss_conf             89999999863036644313111110012522011


No 22 
>pfam00195 Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain. The C-terminal domain of Chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in this N-terminal domain.
Probab=99.95  E-value=2e-27  Score=199.08  Aligned_cols=166  Identities=22%  Similarity=0.321  Sum_probs=135.9

Q ss_pred             EEEEEEEEECCCCCCCHHHHHHHH----CC---C-----HHHEEECCCCCEEEEECCCC---------------------
Q ss_conf             099999973588613888999880----99---9-----76831114750889948988---------------------
Q gi|254780489|r    6 SCILGFGHAVPNQCIHNSIIERHL----NL---K-----LGVIEQKTGIKYRYWAEKHE---------------------   52 (325)
Q Consensus         6 ~~I~g~g~~lP~~~i~n~~l~~~~----~~---~-----~~~i~~~tGI~~R~~~~~~e---------------------   52 (325)
                      ++|.|+|+.+|++.++++++.+.+    +.   .     ..+|.+++||++||..-++|                     
T Consensus        17 A~Il~IgTA~Pp~~~~Q~~~~d~~~~~~~~~~~~~~k~~l~ri~~~sgI~~R~~vl~~e~~~~~P~~~~~~~ps~~~R~~   96 (228)
T pfam00195        17 ATILAIGTATPSNCVDQSTYPDYYFRVTKSEHLTDLKEKFQRICEKSTIKKRYMVLTEEILKENPELCTEMAPSLDARQD   96 (228)
T ss_pred             EEEEEEEEECCCCEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf             69999997189955248999999999734432426789999899846988315861768761495510256999899999


Q ss_pred             ----CHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC-CCCCCCC-CCCCCCHHHHHHHH
Q ss_conf             ----79999999999986430132223442588431002368874322112100238-6333421-01231012567657
Q gi|254780489|r   53 ----TLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQ-SGAIDLT-GACAGFLYALVMAD  126 (325)
Q Consensus        53 ----~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~-~~~~di~-~~C~g~l~aL~~A~  126 (325)
                          ...+|+.+|+++||+++|++++|||+||++|+|. +..|+...++.++||+++ +.-+.|. +||+|++.+|.+|.
T Consensus        97 ~~~~~a~~La~~Aa~~AL~~aG~~~~dIthlv~vt~TG-~~~Pg~d~~l~~~LGL~~~v~R~~i~~~GC~gg~~gL~~A~  175 (228)
T pfam00195        97 IAVVEVPKLGKEAALKAIKEWGQPKSKITHLVFCTTSG-VDMPGADYQLTKLLGLRPSVKRVMLYQQGCFAGGTVLRLAK  175 (228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEEECCCC-CCCCCHHHHHHHHCCCCCCCHHEEEECCCCHHHHHHHHHHH
T ss_conf             99999999999999999999588988999999994799-98874789999982989872111411454164899999999


Q ss_pred             HHHHCC-CCEEEEEEECCCCCCCCC-CC--C---CCCCCCCCCEEEEEECCCC
Q ss_conf             887438-850588620122444462-22--4---4343254420011220576
Q gi|254780489|r  127 SYINSH-QKPVLIIAANLLSRRINL-ED--K---DTAIIFGDAAGAVVLAPSP  172 (325)
Q Consensus       127 ~~i~~g-~~~vLVv~~e~~S~~~d~-~d--~---~~~~lfGDgA~A~il~~~~  172 (325)
                      ++++++ ..+|||||+|.+|-.++. .+  .   ....||||||+|+||+.+|
T Consensus       176 ~~~~~~p~~~VLvv~~Elcsl~f~~~~~~~~~~lV~~aLFgDGAaAvvv~adP  228 (228)
T pfam00195       176 DLAENNKGARVLVVCSEITAVTFRGPSETHLDSLVGQALFGDGAAAVIIGSDP  228 (228)
T ss_pred             HHHHHCCCCEEEEEEEEHHHEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             99982999879999824011030488765677773441202751799971699


No 23 
>TIGR01833 HMG-CoA-S_euk hydroxymethylglutaryl-CoA synthase; InterPro: IPR010122   Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase.    Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA .   HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria . In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi . In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes , .   This entry is specific for eukaryotic HMG-CoA synthase enzymes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process.
Probab=99.89  E-value=6.7e-22  Score=162.99  Aligned_cols=307  Identities=17%  Similarity=0.199  Sum_probs=218.3

Q ss_pred             CCCCEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             66620999999735886138889998809997683111475088994898879999999999986430132223442588
Q gi|254780489|r    2 IKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLL   81 (325)
Q Consensus         2 ~~~~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~   81 (325)
                      +..++.|+|+-.|+|++-|++.|||+.-+.+.||-.=-.|-..=-++.+.|+...|...|..+++++..|+.++|+.|=+
T Consensus         1 ~p~dVGI~al~~yfP~~yV~Q~~LE~yDgVs~GKYTiGLGq~~mgFc~drEDI~Sl~LTvv~~L~er~~id~~~IGRLEV   80 (461)
T TIGR01833         1 WPKDVGILALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVSKLMERYQIDYNKIGRLEV   80 (461)
T ss_pred             CCCCCEEEEEEEECCCCCCCHHHHHHHCCCCCCCEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEC
T ss_conf             98874068888636887526577863268888950342356620000221015666589999999860787154311010


Q ss_pred             EEEEECCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC---CEEEEEEECCCCCCCCCCCCCC
Q ss_conf             43100236887432---21121002386333421012310125676578874388---5058862012244446222443
Q gi|254780489|r   82 ATSTPDHLLPPSSP---LITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSHQ---KPVLIIAANLLSRRINLEDKDT  155 (325)
Q Consensus        82 ~s~t~d~~~P~~a~---~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g~---~~vLVv~~e~~S~~~d~~d~~~  155 (325)
                      +|.|=-.-..|.=+   .+-++=|.+++.-.|-.+||.|+++||--|-+||++..   |.+||||+|+.  .+....  .
T Consensus        81 GTETiiDKSKSVKtVLMQLF~~sGNTDvEGiDt~NACYGGTaALFNa~~WiESssWDGRyalVVagDiA--vYa~G~--A  156 (461)
T TIGR01833        81 GTETIIDKSKSVKTVLMQLFEESGNTDVEGIDTVNACYGGTAALFNAINWIESSSWDGRYALVVAGDIA--VYAKGN--A  156 (461)
T ss_pred             CCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE--ECCCCC--C
T ss_conf             425341001035577677542057954353255341122479997545432126753034124532111--348889--8


Q ss_pred             CCCCCCCEEEEEECCC-CCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC-----C
Q ss_conf             4325442001122057-654445311355321367765278306986676544556552322451454343201-----0
Q gi|254780489|r  156 AIIFGDAAGAVVLAPS-PLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVK-----I  229 (325)
Q Consensus       156 ~~lfGDgA~A~il~~~-~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-----~  229 (325)
                      +.+=|-||.||+|++. |-.-+.++.++++.+..++|    =|.-.+..|.-...    +..    +-+-.|..     +
T Consensus       157 RPTGGAGavAmLiGp~APivfe~glR~shM~HaYDFY----KPdL~SEYP~VDGk----lS~----~CYl~ALD~cY~~y  224 (461)
T TIGR01833       157 RPTGGAGAVAMLIGPNAPIVFERGLRASHMQHAYDFY----KPDLASEYPVVDGK----LSI----QCYLSALDRCYKSY  224 (461)
T ss_pred             CCCHHHHHHHHHHCCCCCEEECCCCCHHHHCCCCCCC----CCCCCCCCCEECCC----CCH----HHHHHHHHHHHHHH
T ss_conf             8752899999975689888742775412221453336----88883168504453----058----78998988888998


Q ss_pred             HHHHHHHHH---HH-HCCCCCCCCEEEECCCCCHHHHH-HHHHC------------------------CC---------C
Q ss_conf             036789889---97-40120012246305654138999-99971------------------------97---------8
Q gi|254780489|r  230 MAQSAKQSL---RK-SDLQPQDINRFIPHQANSRIIQK-VCEKI------------------------GL---------S  271 (325)
Q Consensus       230 ~~~~i~~~l---~~-~gl~~~did~~i~Hq~~~~~~~~-~~~~l------------------------gi---------~  271 (325)
                      -.+..+...   .+ ...+++++|++|||.|-=++.++ +++.|                        ++         +
T Consensus       225 ~~K~~~~~~~~~~~~~~f~l~~~dy~vFH~PyCKlVqKS~ARLlyNDF~~~~~~~~~~~~~~~~~~l~~l~~~~ty~drd  304 (461)
T TIGR01833       225 CKKIEKQLGKSGKDGRKFTLDDFDYMVFHSPYCKLVQKSLARLLYNDFLANPSSETDTALYEVLEALSTLKLEDTYTDRD  304 (461)
T ss_pred             HHHHHHHHHCCCCCCCCCCHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHH
T ss_conf             88899874202446763306344736750773226899999998888763223445566666677653377112002325


Q ss_pred             HHHH--------------HH--HHHHCCCCCCCHHHHHHHHHHHHCCCC--CCCEEEEEEECCCCCCCCCC
Q ss_conf             6570--------------02--185409330005999999999806789--99899999861551020101
Q gi|254780489|r  272 KRIM--------------VN--SLKDFGNSSSASIPLSLSLENQRKPFQ--KGEKILTISCRRGNDRGIYC  324 (325)
Q Consensus       272 ~~~~--------------~~--~l~~~GN~~sAsi~~~L~~~~~~g~i~--~Gd~vll~~~G~G~s~ga~l  324 (325)
                      .||.              ++  .-.+.|||.+||++-.|.-++.+....  .|.||.+.|.|+|+.+-.+.
T Consensus       305 ~EK~~~~~sk~~f~~k~~~Sl~~~~~~GNMYT~SlYg~laSLL~~~~~~eLaGkRv~~FSYGSGlAAs~FS  375 (461)
T TIGR01833       305 LEKAFMKISKELFDKKVKPSLLLPTQVGNMYTASLYGCLASLLSSKSADELAGKRVGLFSYGSGLAASLFS  375 (461)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCEEEEEECCHHHHHHHEE
T ss_conf             88999999999886102000210005786400789999999974078013077569986362455432110


No 24 
>pfam08541 ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal. This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EC:2.3.1.41, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria.
Probab=99.88  E-value=3.6e-23  Score=171.33  Aligned_cols=88  Identities=39%  Similarity=0.643  Sum_probs=85.3

Q ss_pred             HHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCC
Q ss_conf             99740120012246305654138999999719786570021854093300059999999998067899989999986155
Q gi|254780489|r  238 LRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRRG  317 (325)
Q Consensus       238 l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G  317 (325)
                      |+++|++++|||||++||+|+++++.++++||+|+||++.++++||||+|||+|++|++++++++++|||+|++++||+|
T Consensus         1 L~~~g~~~~dId~~i~Hq~~~~~~~~i~~~lgi~~~k~~~~~~~~GN~~sasip~~L~~~~~~~~i~~Gd~vll~~~G~G   80 (90)
T pfam08541         1 LEKAGLTPDDIDWFVPHQANLRIIDAVAKRLGLPPEKVVVNLDRYGNTSAASIPLALDEAVEEGKLKPGDLVLLVGFGAG   80 (90)
T ss_pred             CCCCCCCHHHCCEEEECCCCHHHHHHHHHHHCCCHHHCEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCC
T ss_conf             94404997999999978888899999999819791325032440377620239999999998199999998999987210


Q ss_pred             CCCCCCCC
Q ss_conf             10201019
Q gi|254780489|r  318 NDRGIYCL  325 (325)
Q Consensus       318 ~s~ga~lL  325 (325)
                      ++||++++
T Consensus        81 ~s~~~~v~   88 (90)
T pfam08541        81 LTWGAAVL   88 (90)
T ss_pred             HHHEEEEE
T ss_conf             41179899


No 25 
>KOG1393 consensus
Probab=99.86  E-value=2.5e-20  Score=152.74  Aligned_cols=302  Identities=19%  Similarity=0.195  Sum_probs=207.0

Q ss_pred             CEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
Q ss_conf             20999999735886138889998809997683111475088994898879999999999986430132223442588431
Q gi|254780489|r    5 SSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLATS   84 (325)
Q Consensus         5 ~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~   84 (325)
                      ++.|.++-.|+|.+.|+++|+++..+.+.++..-..|-.+-.++.+.|+...|+..+.++++++-+++++.|+.|-++|.
T Consensus        11 dvGI~aieiyfP~~yV~Q~elEk~d~vs~gKytIGLGq~~MgfcsdrEDi~Sl~ltvvs~Lmery~i~~~~IGRLEVGTE   90 (462)
T KOG1393          11 DVGIIAIEIYFPSQYVDQEELEKFDGVSAGKYTIGLGQTQMGFCSDREDIISLSLTVVSRLMERYNIDPDSIGRLEVGTE   90 (462)
T ss_pred             CCCEEEEEEECCCCCCCHHHHHHCCCCCCCCEEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEECCE
T ss_conf             35426899976756667666762488544625763475121253763320035599999999983898656411773230


Q ss_pred             EECCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC---CCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             002368874322---112100238633342101231012567657887438---85058862012244446222443432
Q gi|254780489|r   85 TPDHLLPPSSPL---ITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSH---QKPVLIIAANLLSRRINLEDKDTAII  158 (325)
Q Consensus        85 t~d~~~P~~a~~---v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g---~~~vLVv~~e~~S~~~d~~d~~~~~l  158 (325)
                      |--.-..+.-..   +-.+-|..++...|..++|.|+.+||--|-+|+++.   .+.++|||+|+.  .  |.+-..+.+
T Consensus        91 TiiDKSKSVKt~LMqLF~~sgNtdIEGiDttnACYGGtaALfnavnWiESssWDGr~aivV~gDIA--v--Y~~G~aRpT  166 (462)
T KOG1393          91 TIIDKSKSVKTVLMQLFEESGNTDIEGIDTTNACYGGTAALFNAVNWIESSSWDGRYAIVVCGDIA--V--YAKGNARPT  166 (462)
T ss_pred             ECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEE--E--ECCCCCCCC
T ss_conf             024532579999999710138975434434430123389998776552114457741489973378--7--147887777


Q ss_pred             CCCCEEEEEECCCCC-CCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHH------
Q ss_conf             544200112205765-4445311355321367765278306986676544556552322451454343201003------
Q gi|254780489|r  159 FGDAAGAVVLAPSPL-KDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMA------  231 (325)
Q Consensus       159 fGDgA~A~il~~~~~-~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~------  231 (325)
                      -|-||.|+++++... .-++++.++++...-   |++. |.-.+..|.           .+|+.-.....+.+-      
T Consensus       167 GGAgAVAmLIgPnApi~ferglr~thM~hay---DFyK-Pdl~SEyPv-----------VDGklSi~cYl~Ald~cY~~~  231 (462)
T KOG1393         167 GGAGAVAMLIGPNAPIIFERGLRATHMQHAY---DFYK-PDLLSEYPV-----------VDGKLSIQCYLSALDRCYTVY  231 (462)
T ss_pred             CCCCEEEEEECCCCCEEECCCCHHHHHHHHH---HCCC-CCCCCCCCE-----------ECCEEHHHHHHHHHHHHHHHH
T ss_conf             8733589997699855744530344656543---0148-887786862-----------568021898999999999999


Q ss_pred             --HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHC--------------------------------------CCC
Q ss_conf             --6789889974012001224630565413899999971--------------------------------------978
Q gi|254780489|r  232 --QSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKI--------------------------------------GLS  271 (325)
Q Consensus       232 --~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~l--------------------------------------gi~  271 (325)
                        +..++-.+.-+..++++|++++|.+--++.++-..+|                                      .+.
T Consensus       232 ~kK~~~~~~~~~~~~l~~fdy~ifHsP~cKlvqKs~arl~ynDf~~~~~~~~~~~~~~~~~~l~~s~~dr~~ek~~~~~s  311 (462)
T KOG1393         232 RKKIAAQWQKSGSDNLNSFDYIIFHSPYCKLVQKSLARLLYNDFLLNPSQLPESAGLESTLKLDESYTDRDLEKAFIKIS  311 (462)
T ss_pred             HHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99999974335676546577599857035667877777543144414001542001223333000111047788899876


Q ss_pred             ----HHHH-HH-HH-HHCCCCCCCHHHHHHHHHHHHC--CCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf             ----6570-02-18-5409330005999999999806--789998999998615510201019
Q gi|254780489|r  272 ----KRIM-VN-SL-KDFGNSSSASIPLSLSLENQRK--PFQKGEKILTISCRRGNDRGIYCL  325 (325)
Q Consensus       272 ----~~~~-~~-~l-~~~GN~~sAsi~~~L~~~~~~g--~i~~Gd~vll~~~G~G~s~ga~lL  325 (325)
                          .+|. .. .+ .+.||+.++|++..|..++...  .--.|.+|.+++.|+|..+-.++|
T Consensus       312 ~~~~~~Kt~~sl~~~~~~GNmYTaSly~~l~sll~~~~~d~l~Gkrig~FSYGSGlAAs~fs~  374 (462)
T KOG1393         312 KPIFKKKTKPSLLAPRRNGNMYTASLYASLASLLSAVPADELAGKRIGMFSYGSGLAASMFSL  374 (462)
T ss_pred             HHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHCCEEEEEEECCCCHHHEEEE
T ss_conf             777775135116741247742249899999998851660443103788996057641204778


No 26 
>pfam01154 HMG_CoA_synt_N Hydroxymethylglutaryl-coenzyme A synthase N terminal.
Probab=99.86  E-value=4.9e-21  Score=157.34  Aligned_cols=163  Identities=18%  Similarity=0.198  Sum_probs=143.8

Q ss_pred             CEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
Q ss_conf             20999999735886138889998809997683111475088994898879999999999986430132223442588431
Q gi|254780489|r    5 SSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLATS   84 (325)
Q Consensus         5 ~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~   84 (325)
                      ++.|.+++.|+|.+.++..++++..|...+++.+..|.++..+.+++|+..+||..|++++|++.+++|++|++|+++|.
T Consensus         1 ~VGI~~i~~Y~P~~~v~~~~La~~rg~d~~K~~~GlG~~~mav~~~~ED~vTmAanAa~~ll~~~~i~~~~Ig~l~vgTE   80 (171)
T pfam01154         1 DVGIVALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVQKLMERNNLDYDCIGRLEVGTE   80 (171)
T ss_pred             CCCEEEEEEECCHHEECHHHHHHHHCCCHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEECCC
T ss_conf             98987898847711135999999959898885204586354279997279999999999999873999888407996377


Q ss_pred             EECCCCCCCCCCCCCCCCCC-C--CCCCCCCCCCCCCHHHHHHHHHHHHCCC---CEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             00236887432211210023-8--6333421012310125676578874388---5058862012244446222443432
Q gi|254780489|r   85 TPDHLLPPSSPLITHRLGLM-Q--SGAIDLTGACAGFLYALVMADSYINSHQ---KPVLIIAANLLSRRINLEDKDTAII  158 (325)
Q Consensus        85 t~d~~~P~~a~~v~~~Lg~~-~--~~~~di~~~C~g~l~aL~~A~~~i~~g~---~~vLVv~~e~~S~~~d~~d~~~~~l  158 (325)
                      +.-+...+.+.+|++.||++ +  +..+|+.++|.|++.||+.|.+|++++.   |++|||++|+.-  ++....  ..+
T Consensus        81 S~iD~SKs~~t~l~~ll~~~~~~~~~~~e~k~ACyggTaAL~~a~~~v~s~~~~~k~alVV~sDiA~--y~~~~~--e~T  156 (171)
T pfam01154        81 TIIDKSKSVKTVLMQLFEESGNTDIEGIDTTNACYGGTAALFNALNWIESSSWDGRYALVVAGDIAI--YAKGNA--RPT  156 (171)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--CCCCCC--CCC
T ss_conf             6456655689999998376578874033300106989999999999998288789639999841001--379998--756


Q ss_pred             CCCCEEEEEECCC
Q ss_conf             5442001122057
Q gi|254780489|r  159 FGDAAGAVVLAPS  171 (325)
Q Consensus       159 fGDgA~A~il~~~  171 (325)
                      -|-||.|||+++.
T Consensus       157 qGAGAVAmLv~~n  169 (171)
T pfam01154       157 GGAGAVAMLIGPN  169 (171)
T ss_pred             CCCCEEEEEECCC
T ss_conf             7703589997589


No 27 
>pfam08392 FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein. The members of this family are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region featured in this family contains the active site residues, as well as motifs involved in substrate binding.
Probab=99.77  E-value=6.3e-18  Score=137.03  Aligned_cols=171  Identities=14%  Similarity=0.275  Sum_probs=131.6

Q ss_pred             CCCEEEEEEEEECCC--CCCCHHHHHHHHCC----CH------HHEEECCCCCEEEEECC-------CCCH-------HH
Q ss_conf             662099999973588--61388899988099----97------68311147508899489-------8879-------99
Q gi|254780489|r    3 KSSSCILGFGHAVPN--QCIHNSIIERHLNL----KL------GVIEQKTGIKYRYWAEK-------HETL-------TD   56 (325)
Q Consensus         3 ~~~~~I~g~g~~lP~--~~i~n~~l~~~~~~----~~------~~i~~~tGI~~R~~~~~-------~e~~-------~~   56 (325)
                      .+.+|++...+|-|+  .+++.+.+.++...    .+      .+|.+++||.+..+.++       +.+.       ..
T Consensus         6 ~r~vYLvDfaC~kp~~~~kv~~~~~~e~~~~~~~f~~~s~~F~~kil~rSGlG~eTy~P~~~~~~p~~~s~~~ar~Eae~   85 (290)
T pfam08392         6 PRPVYLVDYACYKPPDDRKVSTETFMEHIRRNGKFDEESLDFQRKILERSGLGEETYVPRSVLEIPPNPTMAEAREEAEE   85 (290)
T ss_pred             CCCEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHH
T ss_conf             99889985532079720316999999999865899868999999999964899988578254258999879999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCC-CCCCCCHHHHHHHHHHHHCCC-
Q ss_conf             999999998643013222344258843100236887432211210023-86333421-012310125676578874388-
Q gi|254780489|r   57 IAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLT-GACAGFLYALVMADSYINSHQ-  133 (325)
Q Consensus        57 la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~-~~C~g~l~aL~~A~~~i~~g~-  133 (325)
                      .-..|..++|++.+++|.|||.||+..+ -....|+.+++|.++.|++ ++.+|.++ +||++++.++++|.++++.+. 
T Consensus        86 v~f~avd~Lf~ktgv~P~dIdiLVvNcS-lf~PtPSLsamivNrykmR~di~s~nLsGMGCSAglIsIdLAk~lL~~~~n  164 (290)
T pfam08392        86 VMFGAVDELFAKTGVRPRDIGILVVNCS-LFNPTPSLSAMIVNRYKMRGDIKSYNLSGMGCSAGLISIDLAKDLLQVHPN  164 (290)
T ss_pred             HHHHHHHHHHHHCCCCHHHCCEEEEECC-CCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             9999999999973998768999999677-888885289999886068643006336676511347579999999984899


Q ss_pred             CEEEEEEECCCCCCC-CCCCCC---CCCCCCCCEEEEEECCCCCC
Q ss_conf             505886201224444-622244---34325442001122057654
Q gi|254780489|r  134 KPVLIIAANLLSRRI-NLEDKD---TAIIFGDAAGAVVLAPSPLK  174 (325)
Q Consensus       134 ~~vLVv~~e~~S~~~-d~~d~~---~~~lfGDgA~A~il~~~~~~  174 (325)
                      .++|||+.|..|..+ .=+||+   +..+|.-|++|++|++.+..
T Consensus       165 s~ALVvSTE~it~n~Y~G~~rsmLl~NcLFR~GgAAiLLSN~~~~  209 (290)
T pfam08392       165 TYALVVSTENITPNWYAGNDRSMLLPNCLFRMGGAAILLSNKPAD  209 (290)
T ss_pred             CEEEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCC
T ss_conf             659999853045445358736650140113577147983058443


No 28 
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2  has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=99.73  E-value=1.1e-16  Score=128.84  Aligned_cols=202  Identities=18%  Similarity=0.191  Sum_probs=140.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             98879999999999986430132223442588431002368874322112100238633342101231012567657887
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYI  129 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i  129 (325)
                      .+.+..||+.+|+++||++++++|++||-|+++...+.......+..++..+|+++.+++.++.+|++++.++..|...|
T Consensus        12 ~~~s~~eL~~~a~~~Al~dagi~~~~ID~v~~g~~~~~~~~~~~~~~~a~~~G~~~~~~~~v~~~c~Sg~~ai~~Aa~~I   91 (375)
T cd00829          12 SDRSPLELAAEAARAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAEYLGLLGKPATRVEAAGASGSAAVRAAAAAI   91 (375)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCHHHHCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             99699999999999999983919899499999912875534769999999829999865886898869999999999999


Q ss_pred             HCC-CCEEEEEEECCCCCCCCCC---------------------------------------------------------
Q ss_conf             438-8505886201224444622---------------------------------------------------------
Q gi|254780489|r  130 NSH-QKPVLIIAANLLSRRINLE---------------------------------------------------------  151 (325)
Q Consensus       130 ~~g-~~~vLVv~~e~~S~~~d~~---------------------------------------------------------  151 (325)
                      ++| .+.+|+++.|.+|..-.+.                                                         
T Consensus        92 ~~G~~~~vl~~G~Es~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a~~~~~~~g~~re~~~~~a~~~~~~A~~  171 (375)
T cd00829          92 ASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLTPPALYALAARRYMHRYGTTREDLAKVAVKNHRNAAR  171 (375)
T ss_pred             HCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf             77999989999875167787655544456772033320244665789999999999999797999999999999986442


Q ss_pred             CCC-------------------------CCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCC
Q ss_conf             244-------------------------3432544200112205765444531135532136776527830698667654
Q gi|254780489|r  152 DKD-------------------------TAIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAG  206 (325)
Q Consensus       152 d~~-------------------------~~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~  206 (325)
                      ++.                         ..-.+.|||+|+||..++...+.+.-...+...+...           .+..
T Consensus       172 np~A~~~~~~t~e~~~~~~~i~~Pl~~~~~~~~~DGAaa~vl~s~~~A~~~~~~p~~i~g~~~~~-----------~~~~  240 (375)
T cd00829         172 NPYAQFRKPITVEDVLNSRMIADPLRLLDCCPVSDGAAAVVLASEERARELTDRPVWILGVGAAS-----------DTPS  240 (375)
T ss_pred             CCCCCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCCCCEEEEEECHHHHHHCCCCCEEEEEEEEEE-----------CCCC
T ss_conf             86120258858999823476446621431576666405899963999987699937999999995-----------2654


Q ss_pred             CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHH
Q ss_conf             4556552322451454343201003678988997401200122463056541389999997197865
Q gi|254780489|r  207 TNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKR  273 (325)
Q Consensus       207 ~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~  273 (325)
                      .......           .........++++|+++|++++|||.|=+|-+-....-...+.||+.++
T Consensus       241 ~~~~~~~-----------~~~~~~~~A~~~al~~aGl~~~DiD~~Ei~eaFa~~~l~~~e~lGl~~~  296 (375)
T cd00829         241 LSERDDF-----------LSLDAARLAARRAYKMAGITPDDIDVAELYDCFTIAELLALEDLGFCEK  296 (375)
T ss_pred             CCCCCCC-----------CCCHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHHHHHHHHCCCCCC
T ss_conf             3567852-----------2232599999999998199978765642015766999999998099977


No 29 
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=99.69  E-value=3.4e-16  Score=125.71  Aligned_cols=244  Identities=21%  Similarity=0.242  Sum_probs=153.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCE----EEEEEEEECC---------------------CCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999986430132223442----5884310023---------------------68874322112100238633
Q gi|254780489|r   54 LTDIAIQAGDIALRNANIKKDSISL----TLLATSTPDH---------------------LLPPSSPLITHRLGLMQSGA  108 (325)
Q Consensus        54 ~~~la~~Aa~~aL~~a~~~~~dId~----ii~~s~t~d~---------------------~~P~~a~~v~~~Lg~~~~~~  108 (325)
                      .+-+|++|+++||++||++++++.-    |+++++..++                     ..+..+.+|...||++. ++
T Consensus        11 vsl~al~aa~eAl~dAGl~~~~~~~~r~GV~~Gs~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~G-p~   89 (332)
T cd00825          11 VSILGFEAAERAIADAGLSREYQKNPIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTKAMFPGASGQIATPLGIHG-PA   89 (332)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-CC
T ss_conf             99999999999999759993445788889999968831888985312322368642466553489999999968989-63


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCC-----------C------C-CCCCCCCCCCCCCEEEEEEC
Q ss_conf             342101231012567657887438-850588620122444-----------4------6-22244343254420011220
Q gi|254780489|r  109 IDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLSRR-----------I------N-LEDKDTAIIFGDAAGAVVLA  169 (325)
Q Consensus       109 ~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S~~-----------~------d-~~d~~~~~lfGDgA~A~il~  169 (325)
                      +-++.+|++++.||..|.++|+.| .+.++|.++|..+..           .      . |......+++|+||+++||+
T Consensus        90 ~tv~taCaS~l~Ai~~A~~~i~~G~~d~aivgg~~~~~~~~~~~~~~~~~~~~~~~~~rpFd~~~~G~v~gEGa~~lvLe  169 (332)
T cd00825          90 YDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDCEFDAMGALSTPEKASRTFDAAADGFVFGDGAGALVVE  169 (332)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHHH
T ss_conf             03135416889999999999983899874620312117989999999727789898878887889972002654035540


Q ss_pred             CCCCCCC--CCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             5765444--53113553213677652783069866765445565523224514543432010036789889974012001
Q gi|254780489|r  170 PSPLKDK--SGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQD  247 (325)
Q Consensus       170 ~~~~~~~--~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~d  247 (325)
                      +.+...+  ..|.... ...+...+.                ........+        .+.+.++++++|++++++++|
T Consensus       170 ~~~~A~~rg~~i~a~i-~g~~~~~dg----------------~~~~~~~p~--------~~~~~~ai~~Al~~agi~p~~  224 (332)
T cd00825         170 ELEHALARGAHIYAEI-VGTAATIDG----------------AGMGAFAPS--------AEGLARAAKEALAVAGLTVWD  224 (332)
T ss_pred             HHHHHHHCCCCEEEEE-CCCEEECCC----------------CCCCCCCCC--------HHHHHHHHHHHHHHCCCCCCC
T ss_conf             0888875289620331-134587789----------------878887979--------999999999999984988200


Q ss_pred             CCEEEECCCCCHHHH-----HHHHHCCCCHHHHHH-HHHHCCCCCCCHHHHHHHH---HHHHCCCCC-------------
Q ss_conf             224630565413899-----999971978657002-1854093300059999999---998067899-------------
Q gi|254780489|r  248 INRFIPHQANSRIIQ-----KVCEKIGLSKRIMVN-SLKDFGNSSSASIPLSLSL---ENQRKPFQK-------------  305 (325)
Q Consensus       248 id~~i~Hq~~~~~~~-----~~~~~lgi~~~~~~~-~l~~~GN~~sAsi~~~L~~---~~~~g~i~~-------------  305 (325)
                      |||+-.|-.+....+     ++.+.++- ....+. +=..+||+.+|+-.+.+..   +++.+.+.|             
T Consensus       225 I~yI~ahgtGt~~~D~~E~~Al~~~fg~-~~~~v~S~Ks~~GH~~~AsG~~~li~~~lal~~~~ipp~~n~~~~~~~~~~  303 (332)
T cd00825         225 IDYLVAHGTGTPIGDVKELKLLRSEFGD-KSPAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIHIEELDEAGLN  303 (332)
T ss_pred             CCEEEECCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             1479917786855559999999998578-998210574564455265699999999999863960899998999833256


Q ss_pred             ---------CCEEEEEEECCCCCCCCCC
Q ss_conf             ---------9899999861551020101
Q gi|254780489|r  306 ---------GEKILTISCRRGNDRGIYC  324 (325)
Q Consensus       306 ---------Gd~vll~~~G~G~s~ga~l  324 (325)
                               .+.++.-+||-|-+-..++
T Consensus       304 ~~~~~~~~~~~~~~~nsfGfGG~Na~vv  331 (332)
T cd00825         304 IVTETTPRELRTALLNGFGLGGTNATLV  331 (332)
T ss_pred             CCCCCCCCCCCEEEEECCCCCCEEEEEE
T ss_conf             6777768999899996702681406886


No 30 
>pfam02797 Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain.
Probab=99.68  E-value=1.8e-16  Score=127.51  Aligned_cols=117  Identities=17%  Similarity=0.165  Sum_probs=97.4

Q ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHH---HHHHHHCCCC
Q ss_conf             5655232245145434320100367898899740120012246305654138999999719786570---0218540933
Q gi|254780489|r  209 THDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIM---VNSLKDFGNS  285 (325)
Q Consensus       209 ~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~---~~~l~~~GN~  285 (325)
                      ..+..+.+.-.++|....-+++.+.+.++|+++|++..|++++++|++++++++++.+.|++++++.   +.+|++|||+
T Consensus        21 i~~~Gf~~~Ls~~VP~~i~~~l~~~v~~~L~~~gl~~~d~~~wa~HPGG~~Ilda~~~~L~L~~~~l~~Sr~vL~~~GNm  100 (151)
T pfam02797        21 LREEGLTFHLLKDVPQLISKNIEKCLVEAFDPLGISDWNSIFWIAHPGGPAILDQVEAKLGLKPEKLRASRHVLSEYGNM  100 (151)
T ss_pred             EECCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCH
T ss_conf             86698899988263699999899999999987499833245278879978999999998199989999999999975861


Q ss_pred             CCCHHHHHHHHHHHH----CCCCCC---CEEEEEEECCCCCCCCCCC
Q ss_conf             000599999999980----678999---8999998615510201019
Q gi|254780489|r  286 SSASIPLSLSLENQR----KPFQKG---EKILTISCRRGNDRGIYCL  325 (325)
Q Consensus       286 ~sAsi~~~L~~~~~~----g~i~~G---d~vll~~~G~G~s~ga~lL  325 (325)
                      +|++++++|++++++    +.-.+|   |+.++++||+|+|...+||
T Consensus       101 SS~tVlfVLe~~~~~~~~~~~~~~g~~~e~gl~~AfGPG~t~E~~LL  147 (151)
T pfam02797       101 SSACVLFILDEMRKKSLKKGKSTTGEGLEWGVLFGFGPGLTVETVVL  147 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHH
T ss_conf             89999999999997664447888888865689999688299999997


No 31 
>pfam08545 ACP_syn_III 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III. This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EC:2.3.1.41, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria.
Probab=99.65  E-value=2e-16  Score=127.20  Aligned_cols=79  Identities=46%  Similarity=0.718  Sum_probs=72.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf             342101231012567657887438-8505886201224444622244343254420011220576544453113553213
Q gi|254780489|r  109 IDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAVVLAPSPLKDKSGILGIELTSD  187 (325)
Q Consensus       109 ~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S~~~d~~d~~~~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~  187 (325)
                      |||+.+|+||++||++|..++++| .+++|||++|++|+++||+|+.+.++|||||+|+||++.+. ++.+++++.+.||
T Consensus         1 fDi~~~Csg~~~aL~~A~~~i~sg~~~~vLvv~~e~~s~~~~~~d~~~~~lfGDga~A~il~~~~~-~~~~il~~~~~td   79 (80)
T pfam08545         1 FDINAACSGFVYALSTAAALIRSGRAKNVLVVGAETLSRILDWTDRSTAVLFGDGAGAVVLEATEE-GGARILSSVLGSD   79 (80)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCEEEEEEEEECCC-CCCEEEEEEEECC
T ss_conf             960641488999999999999879988589985112455368667724699864026999997178-9984888898458


Q ss_pred             C
Q ss_conf             6
Q gi|254780489|r  188 G  188 (325)
Q Consensus       188 ~  188 (325)
                      +
T Consensus        80 g   80 (80)
T pfam08545        80 G   80 (80)
T ss_pred             C
T ss_conf             9


No 32 
>PRK12578 acetyl-CoA acetyltransferase; Provisional
Probab=99.64  E-value=2e-14  Score=114.10  Aligned_cols=226  Identities=16%  Similarity=0.188  Sum_probs=142.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             98879999999999986430132223442588431002--3688743221121002386333421012310125676578
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPD--HLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADS  127 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d--~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~  127 (325)
                      ++.+..+|+.+|+++||+++|++|+|||.+++++....  ...|  +..+++.+|++..+.+.++.+|+++..++..|..
T Consensus        17 ~~~s~~eL~~eA~~~Al~dAgl~~~dVD~v~~G~~~~~g~~~~~--~~~~a~~~Gl~~~~~~~v~~~caSG~~av~~A~~   94 (385)
T PRK12578         17 DDVSIQELAWESIKEALEDAGITQKDVDLVVIGSTAYRGVELYP--APPVSEYSGLTGKVPLRVEAACATGSAAAFTAYT   94 (385)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCCCCCCCH--HHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHH
T ss_conf             99799999999999999984929899599999456755522362--8999997599898866881667789999999999


Q ss_pred             HHHCC-CCEEEEEEECCCCCCC--------------CCCCC---------------------------------------
Q ss_conf             87438-8505886201224444--------------62224---------------------------------------
Q gi|254780489|r  128 YINSH-QKPVLIIAANLLSRRI--------------NLEDK---------------------------------------  153 (325)
Q Consensus       128 ~i~~g-~~~vLVv~~e~~S~~~--------------d~~d~---------------------------------------  153 (325)
                      .|++| .+.+|+++.|.+|+.-              .|...                                       
T Consensus        95 ~I~sG~~dvvl~~G~e~ms~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~~al~a~~ym~~yg~~~e~la~vav~~~~~A  174 (385)
T PRK12578         95 SIASGLADIAMAVGVDKMTEVDTSTSLAIGGRGGNYQWEFHMYGTTFPTYYALYATRHMAVFGTTEEQMALVSVKAHKYA  174 (385)
T ss_pred             HHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             99838599999945520577886432011455565320002346652799999999999996969999999999844876


Q ss_pred             -----------C------------------CCCCCCCCEEEEEECCCCCCCCCCCE-EEEEEECCCCCCEEEEECCCCCC
Q ss_conf             -----------4------------------34325442001122057654445311-35532136776527830698667
Q gi|254780489|r  154 -----------D------------------TAIIFGDAAGAVVLAPSPLKDKSGIL-GIELTSDGSKYDLIKIPTGGSTS  203 (325)
Q Consensus       154 -----------~------------------~~~lfGDgA~A~il~~~~~~~~~~il-~~~~~s~~~~~~~~~~~~~~~~~  203 (325)
                                 .                  .+-..+|||+|+||...+...+.++- ...+...+...+...+       
T Consensus       175 ~~np~A~~~~~~t~edvl~s~~i~~Pl~~~dc~~~sDGAaAvvl~s~e~ar~lg~~~pv~I~g~g~~~~~~~~-------  247 (385)
T PRK12578        175 SMNPKAHFQKPVTVEDVLKSRVISWPIKLLDSSPISDGSATAIFASEEKVRELKIDTPVWIDGIGYASDTSYI-------  247 (385)
T ss_pred             HCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHCCCCCCCCEEEEECCHHHHHHCCCCCCEEEEEEEECCCCCCC-------
T ss_conf             5696321468778889731576557742764046679846799716999985499986799989852566442-------


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHH----------
Q ss_conf             6544556552322451454343201003678988997401200122463056541389999997197865----------
Q gi|254780489|r  204 PAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKR----------  273 (325)
Q Consensus       204 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~----------  273 (325)
                          ..+....           .........+++++++|++++|||.+-+|-+-...--...+.||+.+.          
T Consensus       248 ----~~~~~~~-----------~~~~~~~A~~~a~~~AGl~~~DiDv~ei~D~Ft~~~l~~~E~lG~~~~Ge~~~~~~~g  312 (385)
T PRK12578        248 ----ARRGEWV-----------GLKATRLAAEMAYKMAKISPNDIEYATVHDCFTIAEIMAYEDLGFVEKGKGGKLLEEG  312 (385)
T ss_pred             ----CCCCCCC-----------CCHHHHHHHHHHHHHHCCCHHHCCEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHCC
T ss_conf             ----2356544-----------5638999999999871998665866520354278899999985999888379998678


Q ss_pred             ------HHHHH----HHHCCCCCCCHHHHHHHHHHH
Q ss_conf             ------70021----854093300059999999998
Q gi|254780489|r  274 ------IMVNS----LKDFGNSSSASIPLSLSLENQ  299 (325)
Q Consensus       274 ------~~~~~----l~~~GN~~sAsi~~~L~~~~~  299 (325)
                            +.+.|    +--+||...++-...+.++..
T Consensus       313 ~~~~~G~~pvN~~GG~ls~Ghp~gatG~~~v~E~v~  348 (385)
T PRK12578        313 QTEKGGKVAVNLFGGLKAKGHPLGATGLSMIYEITK  348 (385)
T ss_pred             CCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHH
T ss_conf             745699851528830764798455289999999999


No 33 
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=99.63  E-value=6.5e-15  Score=117.33  Aligned_cols=98  Identities=15%  Similarity=0.137  Sum_probs=85.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887432211210023-863334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+..+++++|++++++|++||.|+++++.+....+..+..+.-..|++ +++++.|+++|++++.|+..|...
T Consensus        18 ~~~~~~~L~~~ai~~al~~agl~~~~Id~vi~G~~~~~g~g~n~aR~~al~aGlp~~vp~~tV~~aCaSG~~Ai~~A~~~   97 (386)
T cd00751          18 KDVSADDLGAAVIKALLERAGLDPEEVDDVIMGNVLQAGEGQNPARQAALLAGLPESVPATTVNRVCGSGLQAVALAAQS   97 (386)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf             88989999999999999984989899998999950666656639999999769998886588842216879999999741


Q ss_pred             HHCC-CCEEEEEEECCCCCC
Q ss_conf             7438-850588620122444
Q gi|254780489|r  129 INSH-QKPVLIIAANLLSRR  147 (325)
Q Consensus       129 i~~g-~~~vLVv~~e~~S~~  147 (325)
                      |++| .+.+|+++.|.+|+.
T Consensus        98 I~sG~~dvvla~GvEsmS~~  117 (386)
T cd00751          98 IAAGEADVVVAGGVESMSRA  117 (386)
T ss_pred             HCCCCCCEEEEECCCCCCCC
T ss_conf             10799778887244535657


No 34 
>PRK06064 acetyl-CoA acetyltransferase; Provisional
Probab=99.63  E-value=6.6e-15  Score=117.29  Aligned_cols=201  Identities=21%  Similarity=0.228  Sum_probs=132.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236--88743221121002386333421012310125676578
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHL--LPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADS  127 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~--~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~  127 (325)
                      .+.+..||+.+|+++||++++++|+|||-+++++..+...  .+..+..++..+|+++.+++.++.+|++++.++..|..
T Consensus        18 ~~~~~~dL~~~a~~~al~~agl~~~~ID~vi~G~~~~g~~~~~~~~a~~~a~~~Gl~~~p~~~v~~~c~SG~~Ai~~Aa~   97 (389)
T PRK06064         18 WDVSLRDLAVEAGLEALEDAGIDGKDIDAMYVGNMSGGRFVGQEHIAALIADYAGLAPIPATRVEAACASGGAAVRQAYL   97 (389)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf             99799999999999999980949899599999812766434324099999997599998668993753679999999999


Q ss_pred             HHHCC-CCEEEEEEECCCCCCCCCC---------CC--------------------------------------------
Q ss_conf             87438-8505886201224444622---------24--------------------------------------------
Q gi|254780489|r  128 YINSH-QKPVLIIAANLLSRRINLE---------DK--------------------------------------------  153 (325)
Q Consensus       128 ~i~~g-~~~vLVv~~e~~S~~~d~~---------d~--------------------------------------------  153 (325)
                      .|++| .+.+|+.+.|.+|+.-...         |+                                            
T Consensus        98 ~I~sG~~dvvlagG~E~ms~~p~~~~~~~~~~~~d~~~~~~~g~~~~~~~a~~a~~~~~~ygitre~~~~~A~~s~~~A~  177 (389)
T PRK06064         98 AVASGEADVVLAAGVEKMTDVPTPDATEAIARAADREWEEFFGATFPGLYALIARAYMHKYGTTEEDLALVAVKNHYNGS  177 (389)
T ss_pred             HHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             99739998999944223577987642112220244220101488719999999999999969699999999997556542


Q ss_pred             ---C--------------C-----------CCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCC
Q ss_conf             ---4--------------3-----------43254420011220576544453113553213677652783069866765
Q gi|254780489|r  154 ---D--------------T-----------AIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPA  205 (325)
Q Consensus       154 ---~--------------~-----------~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~  205 (325)
                         .              +           +-...|||+|+||..++...+.+.....+...+...+...          
T Consensus       178 ~np~a~~~~~it~e~~~~~~~i~~pl~~~n~s~~~DGAaAvvl~s~~~A~~l~~~pv~i~g~~~~~~~~~----------  247 (389)
T PRK06064        178 KNPYAQFQNEITVEQVLNSPYVADPLKLLDCSPITDGAAAVILASEEKAKEYTDTPVWIKASGQASDTIA----------  247 (389)
T ss_pred             CCCHHCCCCCCCHHHHCCCCCCCCCHHHHCCCCCCCCCEEEEEECHHHHHHCCCCCEEEEEEEEEECCCC----------
T ss_conf             3952105688659896454443351022111467887449999259999865899759999999951211----------


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCH
Q ss_conf             4455655232245145434320100367898899740120012246305654138999999719786
Q gi|254780489|r  206 GTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSK  272 (325)
Q Consensus       206 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~  272 (325)
                                ....+++..  .......++++|+++|++++|||.+=.|-+-....-...+.||+.+
T Consensus       248 ----------~~~~~~~~~--~~~~~~A~~~al~~aGl~~~DiD~~ElneaFa~~~l~~~e~LGl~~  302 (389)
T PRK06064        248 ----------LHDRKDFTT--LEAAVVAAEKAYKMAGIDPKDIDVAEVHDCFTIAEILAYEDLGFAK  302 (389)
T ss_pred             ----------CCCCCCCCC--CCHHHHHHHHHHHHHCCCHHHCCEEEECCCCHHHHHHHHHHCCCCC
T ss_conf             ----------367875345--8728999999999829998887688741554799999999829996


No 35 
>PRK06059 lipid-transfer protein; Provisional
Probab=99.62  E-value=4.5e-14  Score=111.87  Aligned_cols=257  Identities=17%  Similarity=0.191  Sum_probs=152.0

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             887999999999998643013222344258843100236887--432211210023863334210123101256765788
Q gi|254780489|r   51 HETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPP--SSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        51 ~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~--~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      +.+..+|+.+|+++||++||++++|||.+++++..+. ..|.  ....+++.||+...++..+..+|+++..++..|...
T Consensus        20 ~r~~~~l~~eA~~~AL~DAGl~~~dVD~v~~~~~~~~-~~~~~~~~~~~a~~lGl~g~p~~~v~~~~asG~~a~~~A~~~   98 (399)
T PRK06059         20 GRDFTEYGVVAARAALADAGLDWRQVQLVAGADTIRN-GYPGFVAGATFAQKLGWNGVPVTSSYAACASGSQALQSARAQ   98 (399)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCC-CCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             9798999999999999855999899468843034566-777532269999975998863112116248999999999999


Q ss_pred             HHCC-CCEEEEEEECCCCCC----------C--CCC--------------------------------------------
Q ss_conf             7438-850588620122444----------4--622--------------------------------------------
Q gi|254780489|r  129 INSH-QKPVLIIAANLLSRR----------I--NLE--------------------------------------------  151 (325)
Q Consensus       129 i~~g-~~~vLVv~~e~~S~~----------~--d~~--------------------------------------------  151 (325)
                      |++| .+.+||+++|..+..          .  +|.                                            
T Consensus        99 I~sG~~d~vlvvg~e~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~p~~~Al~a~rym~~yG~t~e~lA~vavk~~~~a~~  178 (399)
T PRK06059         99 ILAGFCDVALVIGADTTPKGFFAPVGGERKNDPDWQRFHLIGATNTVYFALLARRRMDLYGATVEDFAQVKVKNARHGLD  178 (399)
T ss_pred             HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             98499878999403357876544554556677114443014785088999999999999797999999999999987710


Q ss_pred             CC----------------------CC---CCCCCCCEEEEEECCCCCCCCC-----CCEEEEEEEC-CCCCCEEEEECCC
Q ss_conf             24----------------------43---4325442001122057654445-----3113553213-6776527830698
Q gi|254780489|r  152 DK----------------------DT---AIIFGDAAGAVVLAPSPLKDKS-----GILGIELTSD-GSKYDLIKIPTGG  200 (325)
Q Consensus       152 d~----------------------~~---~~lfGDgA~A~il~~~~~~~~~-----~il~~~~~s~-~~~~~~~~~~~~~  200 (325)
                      ++                      ..   .-..+|||+|+||..++...+.     .+....-... ...+.        
T Consensus       179 NP~A~~r~~it~edvl~s~~Ia~PL~l~dc~~~sDGAaAvVl~s~e~A~~~~~~~~~~~~i~~~~~~~~~~~--------  250 (399)
T PRK06059        179 NPNARYRKEVSVEDVLASPVVSDPLRLLDICATSDGAAALIVASKSFAEKHLGSVAGVPSVRAISTVTPQYP--------  250 (399)
T ss_pred             CCHHHCCCCCCHHHHCCCCHHHHCCCCCCCCCCCCCEEEEEEECHHHHHHHCCCCCCCEEEEEEEEECCCCC--------
T ss_conf             928666899887887238264526155131788885089999559999872235678839999984057544--------


Q ss_pred             CCCCCCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHH------
Q ss_conf             667654455-6552322451454343201003678988997401200122463056541389999997197865------
Q gi|254780489|r  201 STSPAGTNT-HDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKR------  273 (325)
Q Consensus       201 ~~~~~~~~~-~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~------  273 (325)
                      ...+...+. .+......-....|      -....+++++++|++++|||.+-+|-.-..+.-...|.||+-+.      
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~a~~ay~~AGi~p~DiDvae~yD~ft~~~l~~lE~lGf~~~Ge~~~~  324 (399)
T PRK06059        251 QHLPELPDIATDSTAAVPAPERVF------KDQILDAAYAEAGIGPEDLSLAEVYDLSTALELDWYEHLGLCPKGEAEAL  324 (399)
T ss_pred             CCCCCCCCCCCCCHHCCCCHHHHH------HHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCHHHH
T ss_conf             333233321222101023315567------89999999998299978872775316660989999998499789837999


Q ss_pred             ----------HHHHH----HHHCCCCCCCHHHHHHHHHHHH--CC----CCCCCEEEEEEECCCCCCCC
Q ss_conf             ----------70021----8540933000599999999980--67----89998999998615510201
Q gi|254780489|r  274 ----------IMVNS----LKDFGNSSSASIPLSLSLENQR--KP----FQKGEKILTISCRRGNDRGI  322 (325)
Q Consensus       274 ----------~~~~~----l~~~GN~~sAsi~~~L~~~~~~--g~----i~~Gd~vll~~~G~G~s~ga  322 (325)
                                +++.|    +.-.||...++=...+.++..+  |+    =-+|-++.|+.-+.|+..+.
T Consensus       325 v~~G~~~~~G~lPvNtsGGlls~Ghp~gatG~~~~~E~~~QLrG~Ag~rQV~~a~~gl~~n~G~~~~~~  393 (399)
T PRK06059        325 LRSGATTLGGRIPVNPSGGLACFGEAIPAQAIAQVCELTWQLRGQATGRQVEGAKVGITANQGLFGHGS  393 (399)
T ss_pred             HHCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCE
T ss_conf             977996679970355886021189966157999999999997488767738986178874778877732


No 36 
>PRK08256 lipid-transfer protein; Provisional
Probab=99.62  E-value=3.8e-14  Score=112.35  Aligned_cols=197  Identities=19%  Similarity=0.235  Sum_probs=128.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             98879999999999986430132223442588431002368874322112100238633342101231012567657887
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYI  129 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i  129 (325)
                      .+.+..+|+.+|+++||++||++|+|||.++++.+.++...   .......+|+...+++.|+.+|.+++.++..|...|
T Consensus        18 ~~~~~~~L~~eA~~~AL~dAGi~~~~ID~v~~G~~~~~~~~---~~~a~~~~g~~g~P~~tV~~~CaSG~~Ai~~Aa~~I   94 (391)
T PRK08256         18 ASWDYPDMAAEAGRAALADAGIDYDEVQQAYVGYVYGDSTS---GQRALYEVGMTGIPVVNVNNNCSTGSTALFLARQAV   94 (391)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCC---HHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             99999999999999999982989899899989703687500---599999613369965888787616999999999999


Q ss_pred             HCC-CCEEEEEEECCCCCCC-----------------------CC-----------------------------------
Q ss_conf             438-8505886201224444-----------------------62-----------------------------------
Q gi|254780489|r  130 NSH-QKPVLIIAANLLSRRI-----------------------NL-----------------------------------  150 (325)
Q Consensus       130 ~~g-~~~vLVv~~e~~S~~~-----------------------d~-----------------------------------  150 (325)
                      ++| .+.+|+++.|.+|+.-                       ++                                   
T Consensus        95 ~sG~advvla~G~E~Ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~~~~~~g~t~e~~A~vav~~  174 (391)
T PRK08256         95 ASGAADCALALGFEQMQPGALGSVWDDRPSPLERHDKALAELVGFDGFPPALRMFGGAGREHMQKYGTTAETFAKIGAKA  174 (391)
T ss_pred             HCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             76998889996440357666566658776711224566665304443638999999999999999786999859999997


Q ss_pred             ------------CCCC-------C-----------CCCCCCCEEEEEECCCCCCCCCC------CEEEEEEECCCCCCEE
Q ss_conf             ------------2244-------3-----------43254420011220576544453------1135532136776527
Q gi|254780489|r  151 ------------EDKD-------T-----------AIIFGDAAGAVVLAPSPLKDKSG------ILGIELTSDGSKYDLI  194 (325)
Q Consensus       151 ------------~d~~-------~-----------~~lfGDgA~A~il~~~~~~~~~~------il~~~~~s~~~~~~~~  194 (325)
                                  .++.       +           +-...|||+|+||..++...+.+      |++.-..++.      
T Consensus       175 ~~~a~~np~A~~~~~~t~e~v~~s~~i~~plt~~~~s~~sDGAaAvvl~See~A~~~g~~~~v~I~g~a~~~~~------  248 (391)
T PRK08256        175 RRHAANNPYAQFRDEVTLEDVLASPMIWGPLTRLQCCPPTCGAAAAILCSEEFARKHGLDRAVEIAAQAMTTDF------  248 (391)
T ss_pred             HHHHHHCCHHCCCCCCCHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEECHHHHHHCCCCCCEEEEEEEEECCC------
T ss_conf             89887196101378888999823485224025764589999718999956999986499987799999985267------


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHH
Q ss_conf             8306986676544556552322451454343201003678988997401200122463056541389999997197865
Q gi|254780489|r  195 KIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKR  273 (325)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~  273 (325)
                               +........       +++.  ......+.++++++++|++++|||.+-+|-+-...--...+.||+.++
T Consensus       249 ---------~~~~~~~~~-------~~~~--~~~~~~~Aa~~a~~~AGl~~~DiDv~Ei~daFa~~~l~~le~lG~~~~  309 (391)
T PRK08256        249 ---------PSTFDGGDM-------INLV--GYDMTRAAAQQVYEQAGVGPEDIDVIELHDCFSANELLTYEALGLCPE  309 (391)
T ss_pred             ---------CHHCCCCCC-------HHHC--CCCCHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHHHHHHHHCCCCCC
T ss_conf             ---------200147881-------4430--564069999999998499988876764215554889999998199988


No 37 
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=99.61  E-value=1.7e-14  Score=114.69  Aligned_cols=98  Identities=18%  Similarity=0.171  Sum_probs=84.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887432211210023-863334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+..+++++|++++++|++||.|+++.+.+...-+..+..+....|++ .++++.|+..|++++.|+.+|.+.
T Consensus        22 ~~~~~~dL~~~a~~~~l~r~~l~~~~Id~vi~G~~~~~g~g~~~aR~~~l~aGlp~~vp~~tV~~~CaSGl~Ai~~A~~~  101 (393)
T PRK08235         22 KDVKATELGGIAIKEALERANVSAEDVEEVIMGTVLQGGQGQIPSRQAARAAGIPWEVQTETINKVCASGLRAVTLADQI  101 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             89989999999999999873989899998999935733545519999999769998886078825440547999999999


Q ss_pred             HHCC-CCEEEEEEECCCCCC
Q ss_conf             7438-850588620122444
Q gi|254780489|r  129 INSH-QKPVLIIAANLLSRR  147 (325)
Q Consensus       129 i~~g-~~~vLVv~~e~~S~~  147 (325)
                      |++| ...+|+++.|.+|+.
T Consensus       102 I~sG~~dv~lagGvEsmS~~  121 (393)
T PRK08235        102 IRAGDASVIVAGGMESMSNA  121 (393)
T ss_pred             HHCCCCCEEEEEEEEECCCC
T ss_conf             85898746688604654567


No 38 
>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.60  E-value=3.9e-14  Score=112.24  Aligned_cols=274  Identities=16%  Similarity=0.186  Sum_probs=154.5

Q ss_pred             CCCCCEEEEEEEEECCCCCCCHHHHHHHH--CCC-----HHHEE----EC-CC-CCEEE-----EECCC-----------
Q ss_conf             96662099999973588613888999880--999-----76831----11-47-50889-----94898-----------
Q gi|254780489|r    1 MIKSSSCILGFGHAVPNQCIHNSIIERHL--NLK-----LGVIE----QK-TG-IKYRY-----WAEKH-----------   51 (325)
Q Consensus         1 M~~~~~~I~g~g~~lP~~~i~n~~l~~~~--~~~-----~~~i~----~~-tG-I~~R~-----~~~~~-----------   51 (325)
                      |.+.++.|+|+|...|.- .+-+++-+.+  +.+     .++-.    .+ .| ++...     ..+++           
T Consensus         1 m~~~rVaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fd~~~~i~~~~~~~~   79 (424)
T PRK06333          1 MNKKRIVVTGMGVVSPLG-NGVETFWQRLLAGQSGIRTLTDFPCGDLATKIGGWVPELAEDAEAGFDPDPYLDPKDQRKM   79 (424)
T ss_pred             CCCCCEEEECCEEECCCC-CCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCHHHHHHC
T ss_conf             999989998768789898-9999999999819985754896645478774232736744454346795664899999862


Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCC------CEEEEEEEEE-----------------CCCCCC---------CCCCCCC
Q ss_conf             8799999999999864301322234------4258843100-----------------236887---------4322112
Q gi|254780489|r   52 ETLTDIAIQAGDIALRNANIKKDSI------SLTLLATSTP-----------------DHLLPP---------SSPLITH   99 (325)
Q Consensus        52 e~~~~la~~Aa~~aL~~a~~~~~dI------d~ii~~s~t~-----------------d~~~P~---------~a~~v~~   99 (325)
                      ....-++.+|+++||++||++|+++      .+ ++++...                 +.+.|.         .+.+|..
T Consensus        80 d~~~~~~l~aa~eAl~dAG~~~~~~~~~~r~gv-ivgs~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~  158 (424)
T PRK06333         80 DRFITFAMAAAKEAIAQAGWDPDNLPDRERTAT-IIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSI  158 (424)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEE-EEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             999999999999999975998246267765799-9962568568899999999754865448403456776689999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-CEEEEEEECCC---------------CCCC--------C-CCCCC
Q ss_conf             1002386333421012310125676578874388-50588620122---------------4444--------6-22244
Q gi|254780489|r  100 RLGLMQSGAIDLTGACAGFLYALVMADSYINSHQ-KPVLIIAANLL---------------SRRI--------N-LEDKD  154 (325)
Q Consensus       100 ~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g~-~~vLVv~~e~~---------------S~~~--------d-~~d~~  154 (325)
                      .+|++. +++-+..+|++++.||..|.++|+.|. +.++|.++|..               |...        . ++...
T Consensus       159 ~~gl~G-p~~tv~tACsSsl~Ai~~A~~~i~~G~~d~aivGg~~~~l~~~~~~~f~~~~~Ls~~~~~~p~~~~rPFD~~~  237 (424)
T PRK06333        159 RYGFKG-PLGAPVTACAAGVQAIGDAARLIRSGEADVAICGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASRPFDRAR  237 (424)
T ss_pred             HHCCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             819989-6215064607999999999999977870600035513322707789998766651278888543565112689


Q ss_pred             CCCCCCCCEEEEEECCCCCCC--CCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHH
Q ss_conf             343254420011220576544--453113553213677652783069866765445565523224514543432010036
Q gi|254780489|r  155 TAIIFGDAAGAVVLAPSPLKD--KSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQ  232 (325)
Q Consensus       155 ~~~lfGDgA~A~il~~~~~~~--~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~  232 (325)
                      ..+++|+||+++||++.+...  +..|...... .+...|.....     .           ...++        ....+
T Consensus       238 dG~v~gEGa~~~vLe~~~~A~~rg~~i~a~i~G-~g~~~d~~~~~-----~-----------~~~~~--------~~~~~  292 (424)
T PRK06333        238 DGFVMGEGAGILVIETLEHALARGAPPLAELVG-YGTTADAYHIT-----S-----------GPEDG--------EGARR  292 (424)
T ss_pred             CCCEECCCCCHHHCCCHHHHHHCCCCEEEEEEE-EEEECCCCCCC-----C-----------CCCCH--------HHHHH
T ss_conf             971407852123116687786589966899987-89857998888-----8-----------99883--------67799


Q ss_pred             HHHHHHHHHCCCCCCCCEEEECCCCCHH-----HHHHHHHCCCCHHHHH-H-HHHHCCCCCCCHHHHHHHH---HHHHCC
Q ss_conf             7898899740120012246305654138-----9999997197865700-2-1854093300059999999---998067
Q gi|254780489|r  233 SAKQSLRKSDLQPQDINRFIPHQANSRI-----IQKVCEKIGLSKRIMV-N-SLKDFGNSSSASIPLSLSL---ENQRKP  302 (325)
Q Consensus       233 ~i~~~l~~~gl~~~did~~i~Hq~~~~~-----~~~~~~~lgi~~~~~~-~-~l~~~GN~~sAsi~~~L~~---~~~~g~  302 (325)
                      +++++|+++|++++||||+-.|-.+-+.     .+++.+.++-. .+.+ . +=..+||+-+|+=.+.+-.   +++++.
T Consensus       293 ~m~~Al~~agi~~~~i~yI~aHgtgT~~gD~~E~~al~~~fg~~-~~~~i~S~K~~~GH~~~aaG~~~~i~~~l~l~~~~  371 (424)
T PRK06333        293 AMEGALRQAGIPPEQVQHLNAHATSTPVGDLGEVAAIKKVFGHV-KGLAISSTKSATGHLLGAAGGVEAIFTILALRDQI  371 (424)
T ss_pred             HHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCC-CCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999998499914518799527878666999999999985878-88864781110032578899999999999985498


Q ss_pred             C
Q ss_conf             8
Q gi|254780489|r  303 F  303 (325)
Q Consensus       303 i  303 (325)
                      +
T Consensus       372 i  372 (424)
T PRK06333        372 A  372 (424)
T ss_pred             C
T ss_conf             3


No 39 
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
Probab=99.60  E-value=3.6e-14  Score=112.51  Aligned_cols=274  Identities=18%  Similarity=0.221  Sum_probs=152.9

Q ss_pred             CCEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEE-----ECCCCCEEEEE--C---------CC-----CCHHHHHHHHH
Q ss_conf             6209999997358861388899988099976831-----11475088994--8---------98-----87999999999
Q gi|254780489|r    4 SSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIE-----QKTGIKYRYWA--E---------KH-----ETLTDIAIQAG   62 (325)
Q Consensus         4 ~~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~-----~~tGI~~R~~~--~---------~~-----e~~~~la~~Aa   62 (325)
                      .++.|+|+|...|.- .+-+++-+.+--....|.     ...+...++-.  +         +.     +...-|+.+++
T Consensus         1 ~rIaItG~g~~~P~g-~~~~~fw~~L~~g~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~i~~~~~~~~dp~~rl~l~aa   79 (406)
T cd00834           1 RRVVITGLGAVTPLG-NGVEEFWEALLAGRSGIRPITRFDASGFPSRIAGEVPDFDPEDYLDRKELRRMDRFAQFALAAA   79 (406)
T ss_pred             CEEEEEECEEECCCC-CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEECCCCCHHHCCCHHHHHHCCHHHHHHHHHH
T ss_conf             909999577889797-9999999999749987744883334258885536658888011589999985599999999999


Q ss_pred             HHHHHHCCCCCCCCCE----EEEEEEEEC---------------------CCCC-----CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9986430132223442----588431002---------------------3688-----743221121002386333421
Q gi|254780489|r   63 DIALRNANIKKDSISL----TLLATSTPD---------------------HLLP-----PSSPLITHRLGLMQSGAIDLT  112 (325)
Q Consensus        63 ~~aL~~a~~~~~dId~----ii~~s~t~d---------------------~~~P-----~~a~~v~~~Lg~~~~~~~di~  112 (325)
                      .+||++||+++++++-    |+++++..+                     +..|     ..+.+|...||++. +++-++
T Consensus        80 ~~Al~dAgl~~~~~~~~~~gV~vGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~~l~G-p~~tv~  158 (406)
T cd00834          80 EEALADAGLDPEELDPERIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRLGLRG-PNYTVS  158 (406)
T ss_pred             HHHHHHCCCCHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCHHHHHHHHHHCCCC-CCEEEC
T ss_conf             9999975998234486644799943777377799999999855866568112101131289999999849999-742033


Q ss_pred             CCCCCCHHHHHHHHHHHHCCC-CEEEEEEECCCCC---------------CC-------C-CCCCCCCCCCCCCEEEEEE
Q ss_conf             012310125676578874388-5058862012244---------------44-------6-2224434325442001122
Q gi|254780489|r  113 GACAGFLYALVMADSYINSHQ-KPVLIIAANLLSR---------------RI-------N-LEDKDTAIIFGDAAGAVVL  168 (325)
Q Consensus       113 ~~C~g~l~aL~~A~~~i~~g~-~~vLVv~~e~~S~---------------~~-------d-~~d~~~~~lfGDgA~A~il  168 (325)
                      .+|++++.||..|..+|+.|. +.++|.+++....               ..       . |......++.|+|++++||
T Consensus       159 taCsSsl~Al~~A~~~L~~G~~d~aivgg~~~~~~~~~~~~f~~~~~Ls~~~~~p~~~~rpFD~~adG~v~gEGa~~~vL  238 (406)
T cd00834         159 TACASGAHAIGDAARLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKASRPFDKDRDGFVLGEGAGVLVL  238 (406)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCEEEEEC
T ss_conf             44167678899999999779542021100241278689999998888733899876665655567884001286558851


Q ss_pred             CCCCCCCC--CCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf             05765444--5311355321367765278306986676544556552322451454343201003678988997401200
Q gi|254780489|r  169 APSPLKDK--SGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQ  246 (325)
Q Consensus       169 ~~~~~~~~--~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~  246 (325)
                      ++.+...+  ..|....... +...|...                ......++        ....++++++|+++|++++
T Consensus       239 ~~~~~A~~~g~~i~a~I~g~-~~~~dg~~----------------~~~~~p~~--------~~~~~~i~~al~~agi~~~  293 (406)
T cd00834         239 ESLEHAKARGAKIYAEILGY-GASSDAYH----------------ITAPDPDG--------EGAARAMRAALADAGLSPE  293 (406)
T ss_pred             CCHHHHHHCCCCEEEEEEEE-EEECCCCC----------------CCCCCCCH--------HHHHHHHHHHHHHHCCCCC
T ss_conf             45999986799168999889-99379988----------------88889898--------9999999999998589974


Q ss_pred             CCCEEEECCCCCHH-----HHHHHHHCCCCHHHHH--HHHHHCCCCCCCHHHHHHHH---HHHHCCCC
Q ss_conf             12246305654138-----9999997197865700--21854093300059999999---99806789
Q gi|254780489|r  247 DINRFIPHQANSRI-----IQKVCEKIGLSKRIMV--NSLKDFGNSSSASIPLSLSL---ENQRKPFQ  304 (325)
Q Consensus       247 did~~i~Hq~~~~~-----~~~~~~~lgi~~~~~~--~~l~~~GN~~sAsi~~~L~~---~~~~g~i~  304 (325)
                      ||||+-.|-.+-..     .+++.+.++=..++.+  .+=..+||+-+|+=.+.|-.   +++++.+.
T Consensus       294 ~I~yIe~HgtGt~~gD~~E~~ai~~~f~~~~~~~~i~s~K~~iGH~~~asG~~~li~~~~~l~~~~ip  361 (406)
T cd00834         294 DIDYINAHGTSTPLNDAAESKAIKRVFGEHAKKVPVSSTKSMTGHLLGAAGAVEAIATLLALRDGVLP  361 (406)
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEECCHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             45289970487867799999999998556789866888211001188999999999999998559658


No 40 
>PRK06364 consensus
Probab=99.59  E-value=5.9e-14  Score=111.07  Aligned_cols=202  Identities=18%  Similarity=0.220  Sum_probs=130.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCC--CCCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236--887432211210023--863334210123101256765
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHL--LPPSSPLITHRLGLM--QSGAIDLTGACAGFLYALVMA  125 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~--~P~~a~~v~~~Lg~~--~~~~~di~~~C~g~l~aL~~A  125 (325)
                      ++.+..+|+.+|+++||++||++++|||.++.+...+...  ....+..++..+|++  +.+++-++.+|.++..|+..|
T Consensus        21 ~~~s~~~L~~eA~~~Al~dAgl~~~dID~v~~~~~~~g~~~~~~~~~~~~a~~~gl~~~~vp~~~V~~~caSG~~Ai~~A  100 (389)
T PRK06364         21 WDKSLRDLAVEAGLEAIKDANIYSKDLQMLYASNSLAGTINEQSNIAALAADFSGIAEEHVPAVRVEASTASGGAAVREA  100 (389)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf             99798999999999999880989899899988156665556524399999997599855886699887017899999999


Q ss_pred             HHHHHCC-CCEEEEEEECCCCCCC------------C--CC---------------------------------------
Q ss_conf             7887438-8505886201224444------------6--22---------------------------------------
Q gi|254780489|r  126 DSYINSH-QKPVLIIAANLLSRRI------------N--LE---------------------------------------  151 (325)
Q Consensus       126 ~~~i~~g-~~~vLVv~~e~~S~~~------------d--~~---------------------------------------  151 (325)
                      ...|++| .+.+|+++.|.+|...            |  |.                                       
T Consensus       101 ~~~I~sG~~d~vla~G~e~ms~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~~y~~~~g~~~e~~a~va~~~~~~  180 (389)
T PRK06364        101 YLAIKSGEYDVVMVGGVEKMTDIYGHEIIDVQSSILDREWESFNGATPAAMAAIIARRYMHDFNVEREAISMIAVNDHAN  180 (389)
T ss_pred             HHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             99997297778999610003567776544445433330023303548999999999999999696999999999976563


Q ss_pred             ----------CC---------------C---CCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCC
Q ss_conf             ----------24---------------4---3432544200112205765444531135532136776527830698667
Q gi|254780489|r  152 ----------DK---------------D---TAIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTS  203 (325)
Q Consensus       152 ----------d~---------------~---~~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~  203 (325)
                                ++               .   .+-...|||+|+||..++...+.+.....+...+..++           
T Consensus       181 A~~nP~A~~r~~~t~e~vl~s~~i~~Pl~~~d~s~~~DGAaAvVl~s~e~a~~~~~~~v~i~~~~~~~~-----------  249 (389)
T PRK06364        181 ASRNPDAQYRNKITVKQVMNSDPVAEPLNVFDCSPISDGASAIILASEDFVKKNRKDGVRILSSAMAED-----------  249 (389)
T ss_pred             HHHCCCCCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCCCEEEEEEECHHHHHHCCCCCEEEEEEEEECC-----------
T ss_conf             761960111577678886236876787607445778883179999338999756899759999999624-----------


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHH
Q ss_conf             6544556552322451454343201003678988997401200122463056541389999997197865
Q gi|254780489|r  204 PAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKR  273 (325)
Q Consensus       204 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~  273 (325)
                      +.......         .++  .........+++++++|++++|||.+-.|-+-...--.+.+.||+.++
T Consensus       250 ~~~~~~~~---------~~~--~~~~~~~A~~~A~~~AGl~~~DIDl~Ei~DaFa~~~l~~le~lG~~~~  308 (389)
T PRK06364        250 YLALHSRK---------SIY--TLESTKIAARLALDRAGIKSDDVSFLELNDSYSIYGLLELEDLGFAEK  308 (389)
T ss_pred             CCCCCCCC---------CCC--CCCCHHHHHHHHHHHHCCCHHHCCEEEECCCCHHHHHHHHHHCCCCCC
T ss_conf             55557778---------654--454089999999998199978861775226554999999998099987


No 41 
>TIGR02845 spore_V_AD stage V sporulation protein AD; InterPro: IPR010894   This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation ..
Probab=99.58  E-value=1.4e-14  Score=115.09  Aligned_cols=259  Identities=21%  Similarity=0.301  Sum_probs=167.1

Q ss_pred             CCCEEEEEEEEECCCC----CCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHH-----HHHHHHHHHHCCCCC
Q ss_conf             6620999999735886----1388899988099976831114750889948988799999-----999999864301322
Q gi|254780489|r    3 KSSSCILGFGHAVPNQ----CIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIA-----IQAGDIALRNANIKK   73 (325)
Q Consensus         3 ~~~~~I~g~g~~lP~~----~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la-----~~Aa~~aL~~a~~~~   73 (325)
                      .+.++|.|.|+..=|.    |+..     .|+.    +..-     - |  -+|.+.|||     .+|++.||+|+|++.
T Consensus         7 ~~pp~I~s~gt~vGP~Eg~GPL~~-----~FD~----~~~d-----l-~--~ge~SwEkAEr~lm~~Av~~aL~Ka~l~~   69 (331)
T TIGR02845         7 ENPPVIVSAGTAVGPKEGEGPLGD-----YFDK----IYDD-----L-Y--CGEDSWEKAERKLMEDAVNLALKKANLKK   69 (331)
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCC-----CCCC----EECC-----C-C--CCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             488789986578506347896862-----1252----2014-----4-3--57201899999999999999875358712


Q ss_pred             C--CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCC---CC
Q ss_conf             2--3442588431002368874322112100238633342101231012567657887438-8505886201224---44
Q gi|254780489|r   74 D--SISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLS---RR  147 (325)
Q Consensus        74 ~--dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S---~~  147 (325)
                      +  |||+++ +.-.-.+..  +++++++.||+|-   |.+=+||+.++.+|-++..++.+| ++++|.-.|-.++   |.
T Consensus        70 ~PP~vD~~L-AGDLLNQ~~--~anFvAR~L~iPf---lGLygACsTs~E~L~~gA~lv~GGfAd~vLaAtSSHy~taERQ  143 (331)
T TIGR02845        70 DPPDVDFFL-AGDLLNQII--TANFVARELGIPF---LGLYGACSTSMETLALGAMLVDGGFADRVLAATSSHYATAERQ  143 (331)
T ss_pred             CCCCEEEEE-HHHHHHHHH--HHHHHHHHCCCCC---EECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHH
T ss_conf             787211120-103666789--9989887458882---3402135789999999999983200221111211113532210


Q ss_pred             CC-CCC-----CCC--C-CCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             46-222-----443--4-32544200112205765444531135532136776527830698667654455655232245
Q gi|254780489|r  148 IN-LED-----KDT--A-IIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITN  218 (325)
Q Consensus       148 ~d-~~d-----~~~--~-~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (325)
                      +. |+.     +.+  + ++   ||+|+||++.+.  +.+|-..   |.|      ++.+.|-.+|.....-        
T Consensus       144 FRYPTEyG~Qkp~tAq~TVT---GAGA~~l~~~~~--~~~it~a---T~G------kV~D~G~~dP~~mG~A--------  201 (331)
T TIGR02845       144 FRYPTEYGVQKPPTAQWTVT---GAGAVLLASTGG--GPRITSA---TIG------KVVDLGLTDPLDMGAA--------  201 (331)
T ss_pred             CCCCCCCCCCCCCCCCCCEE---HHHEEEECCCCC--CCEEEEE---EEE------EEEECCCCCCCCHHHH--------
T ss_conf             25651256115998861250---346486544789--4364145---301------4771233686411354--------


Q ss_pred             CHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECC---CCCHHHHHHHHHC-CCCHHHHHHHHHHC------------
Q ss_conf             1454343201003678988997401200122463056---5413899999971-97865700218540------------
Q gi|254780489|r  219 GADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQ---ANSRIIQKVCEKI-GLSKRIMVNSLKDF------------  282 (325)
Q Consensus       219 g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq---~~~~~~~~~~~~l-gi~~~~~~~~l~~~------------  282 (325)
                             ..+.-.+.|+..|+++|.+++|.|.++.=-   .+..|.+.+.++= |++..+   ++++|            
T Consensus       202 -------MAPAAaDTI~~Hf~dtg~~~~DYDLIvTGDL~rvG~~I~~~LL~e~yg~~~~~---~Y~DCG~~IY~~dqqdV  271 (331)
T TIGR02845       202 -------MAPAAADTIEAHFKDTGRSVDDYDLIVTGDLARVGSEILRKLLKEEYGYDVTE---KYDDCGVMIYRPDQQDV  271 (331)
T ss_pred             -------HHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCC---EECCCCEEEECCCCCCC
T ss_conf             -------12689999999998707880401367873300214899999988860875000---10456467533887810


Q ss_pred             -----CCCCCCHHHHH-HHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf             -----93300059999-99999806789998999998615510
Q gi|254780489|r  283 -----GNSSSASIPLS-LSLENQRKPFQKGEKILTISCRRGND  319 (325)
Q Consensus       283 -----GN~~sAsi~~~-L~~~~~~g~i~~Gd~vll~~~G~G~s  319 (325)
                           |--.||.+-.. |-.-+.+|+||   |||+++.|+=+|
T Consensus       272 ~AGGSG~ACSAvV~yGyll~~l~~G~l~---k~LvvaTGALLS  311 (331)
T TIGR02845       272 FAGGSGCACSAVVTYGYLLKELKRGKLK---KVLVVATGALLS  311 (331)
T ss_pred             CCCCCCCCHHHEEHHHHHHHHHHCCCCE---EEEEEECCHHHH
T ss_conf             5778566503321137899998369712---788885103322


No 42 
>PRK07800 consensus
Probab=99.58  E-value=4.8e-14  Score=111.68  Aligned_cols=98  Identities=16%  Similarity=0.171  Sum_probs=84.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887432211210023-863334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+..+++++|++++++|++||.||++...+...-+..+..+.-+.|++ .++++.|+..|.+++.|+.+|...
T Consensus        22 ~~~~~~~L~~~~i~~~l~~~gl~p~~Id~vi~G~v~~~g~g~n~aR~~~l~aglp~~vp~~tV~~~CaSGl~Ai~~A~~~  101 (393)
T PRK07800         22 KDFSASDLGGIAIKAALEKAGVAADQVDYVIMGQVLQAGAGQIPARQAAVAAGIPMDVPALTINKVCLSGLDAIALADQL  101 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             99988999999999999974999899898999924766766509999999769898885699945013799999999999


Q ss_pred             HHCC-CCEEEEEEECCCCCC
Q ss_conf             7438-850588620122444
Q gi|254780489|r  129 INSH-QKPVLIIAANLLSRR  147 (325)
Q Consensus       129 i~~g-~~~vLVv~~e~~S~~  147 (325)
                      |++| .+-+|+++.|.+|+.
T Consensus       102 I~~G~~dvvlagGvEsmS~~  121 (393)
T PRK07800        102 IRAGEFDVVVAGGQESMTQA  121 (393)
T ss_pred             HHCCCCCEEEEEEEECCCCC
T ss_conf             86799866789852024547


No 43 
>PRK07516 acetyl-CoA acetyltransferase; Provisional
Probab=99.58  E-value=1.2e-13  Score=108.96  Aligned_cols=96  Identities=23%  Similarity=0.264  Sum_probs=73.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCC--CCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887--43221-12100238633342101231012567657
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPP--SSPLI-THRLGLMQSGAIDLTGACAGFLYALVMAD  126 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~--~a~~v-~~~Lg~~~~~~~di~~~C~g~l~aL~~A~  126 (325)
                      ++.+..+|+.+|+++||+++|++|+|||-|++++..+.+ .|.  .+..+ ....++...++..++.+|.+++.++..|.
T Consensus        18 ~~~s~~~L~~~A~~~Al~dAgl~~~dID~v~~G~~~~g~-~~~~~~~~~~~~~~~~l~~~p~~~v~~~caSG~~ai~~Aa   96 (389)
T PRK07516         18 DAETLESLIVRVAREALADAGIAAGDVDGIFLGHFNAGF-SPQDFTASLVLQADPALRFKPATRVENACATGSAAVYAAI   96 (389)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCC-CCCHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf             998999999999999999969098993999998247444-6432999999973675568755998787679999999999


Q ss_pred             HHHHCC-CCEEEEEEECCCCC
Q ss_conf             887438-85058862012244
Q gi|254780489|r  127 SYINSH-QKPVLIIAANLLSR  146 (325)
Q Consensus       127 ~~i~~g-~~~vLVv~~e~~S~  146 (325)
                      ..|++| .+.+|+++.|.+|+
T Consensus        97 ~~I~sG~~dvvl~~G~e~ms~  117 (389)
T PRK07516         97 DAIESGRARIVLVVGAEKMTA  117 (389)
T ss_pred             HHHHCCCCCEEEEEEECCCCC
T ss_conf             999759888999998710467


No 44 
>PRK06157 acetyl-CoA acetyltransferase; Validated
Probab=99.57  E-value=3.2e-13  Score=106.25  Aligned_cols=229  Identities=17%  Similarity=0.100  Sum_probs=141.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             98879999999999986430132223442588431002368874322112100238633342101231012567657887
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYI  129 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i  129 (325)
                      ++.+..+|+.+|+++||++||++++|||.+++++..++......+..+...||+.+.+...+..+|+++..++..|...|
T Consensus        23 ~~~s~~~L~~eA~~~AL~DAGl~~~dID~~~~g~~~~~~~~~~~~~~l~~~lg~~~~p~~~v~~~~asG~~al~~A~~aI  102 (400)
T PRK06157         23 WDAGGEDLMVEAYQEAIADAGIEPKQIEAAWFGTHYDEIGTGKSGTPLSMALRLPNIPVTRVENFCATGTEAFRGAVYAV  102 (400)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             99799999999999999973999899899989814775445525799999618998733786477449999999999999


Q ss_pred             HCC-CCEEEEEEECCCCCC---------------------------------------CCCCC-----------------
Q ss_conf             438-850588620122444---------------------------------------46222-----------------
Q gi|254780489|r  130 NSH-QKPVLIIAANLLSRR---------------------------------------INLED-----------------  152 (325)
Q Consensus       130 ~~g-~~~vLVv~~e~~S~~---------------------------------------~d~~d-----------------  152 (325)
                      ++| .+.+||++.|.++..                                       .++++                 
T Consensus       103 ~sG~~d~vlv~g~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~A~~a~~ym~~yG~t~e~l~~~~A~VAvk~r~nA~  182 (400)
T PRK06157        103 ASGAYDIALALGVEKLKDTGYGGLPVASRGTLAPMWMPNGSAPGNFAQLASAYRAKHGVSREDLKRAMAHVSVKSHANGA  182 (400)
T ss_pred             HCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             80988789996454256775344754345630344302587389999999999999797987899999999999999986


Q ss_pred             ---------CC-------C-----------CCCCCCCEEEEEECCCCCCCCC---CCEEEEEEECCCCCCEEEEECCCCC
Q ss_conf             ---------44-------3-----------4325442001122057654445---3113553213677652783069866
Q gi|254780489|r  153 ---------KD-------T-----------AIIFGDAAGAVVLAPSPLKDKS---GILGIELTSDGSKYDLIKIPTGGST  202 (325)
Q Consensus       153 ---------~~-------~-----------~~lfGDgA~A~il~~~~~~~~~---~il~~~~~s~~~~~~~~~~~~~~~~  202 (325)
                               +.       +           .-..+|||+|+||..++...+.   ......-.....          ...
T Consensus       183 ~NP~A~~r~~iT~edvl~s~~Ia~PL~llDc~~~sDGAaAvVv~S~e~Ar~l~~~~~v~i~~~~~~~----------~~~  252 (400)
T PRK06157        183 RNPKAHLRKAVTEEQVLNAPMVAYPLGLFDCCGVSDGAACAIVTTPEIARALGKKDLVTVKALQLAV----------SNG  252 (400)
T ss_pred             HCCCCCCCCCCCHHHHCCCCCCCCCCCHHHCCCCCCEEEEEEEECHHHHHHCCCCCCEEEEEEEEEC----------CCC
T ss_conf             0974125699887887128867688948875887780599999569999860789967999999862----------688


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCC--CCCCEEEECCCCCHHHHHHHHHCCCCHH----H--
Q ss_conf             7654455655232245145434320100367898899740120--0122463056541389999997197865----7--
Q gi|254780489|r  203 SPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQP--QDINRFIPHQANSRIIQKVCEKIGLSKR----I--  274 (325)
Q Consensus       203 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~--~did~~i~Hq~~~~~~~~~~~~lgi~~~----~--  274 (325)
                      .+......+..            ......+..+++++++|+++  +|||.+-+|-.-...--...+.||+-+.    +  
T Consensus       253 ~~~~~~~~~~~------------~~~~~~~aa~~a~~~AGi~~p~~DiDv~elyD~Ft~~~l~~lE~lGfc~~Ge~~~~~  320 (400)
T PRK06157        253 WESQYNGWDGS------------YFHTTRVAAKKAYAEAGIEDPRKELSLMEVHDCFSITELVTMEDLGLSEPGQAWRDV  320 (400)
T ss_pred             CCCCCCCCCCC------------CCHHHHHHHHHHHHHHCCCCCHHHCEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHH
T ss_conf             74346655433------------348899999999998079997666608886166628999999981998888279999


Q ss_pred             ----------HHHH----HHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             ----------0021----8540933000599999999980
Q gi|254780489|r  275 ----------MVNS----LKDFGNSSSASIPLSLSLENQR  300 (325)
Q Consensus       275 ----------~~~~----l~~~GN~~sAsi~~~L~~~~~~  300 (325)
                                ++.|    +--.||...++=...+.++..+
T Consensus       321 ~~G~~~~~G~lPvNtsGGlls~Ghp~gatG~~~~~E~~~Q  360 (400)
T PRK06157        321 LDGFFDADGGVPCQIDGGLKCFGHPIGASGLRMLYEMYLQ  360 (400)
T ss_pred             HCCCCCCCCCEEECCCCCHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             7798357997306688505307986740099999999999


No 45 
>PRK06289 acetyl-CoA acetyltransferase; Provisional
Probab=99.57  E-value=2.1e-13  Score=107.43  Aligned_cols=101  Identities=19%  Similarity=0.196  Sum_probs=76.5

Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCC--CCCCCCC-CCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             89948988799999999999864301322234425884310023688--7432211-21002386333421012310125
Q gi|254780489|r   45 RYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLP--PSSPLIT-HRLGLMQSGAIDLTGACAGFLYA  121 (325)
Q Consensus        45 R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P--~~a~~v~-~~Lg~~~~~~~di~~~C~g~l~a  121 (325)
                      |++..++.+..+|+.+|+++||+++|++|+|||.+++++..++....  ....... ...++...+++-++.+|.++..|
T Consensus        17 r~~~~~~~~~~~L~~eA~~~Al~dAGl~~~dID~v~~G~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~v~~~caSG~~A   96 (408)
T PRK06289         17 RNWTKEGRDFADLTREVVDGTLAAAGIDADDIGVVHVGNFFGELFAGQGHLGAMPATVHPALWGTPASRHEAACASGSVA   96 (408)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHHHH
T ss_conf             78887899999999999999999849998998999997415643445102566788764212588614463523899999


Q ss_pred             HHHHHHHHHCC-CCEEEEEEECCCC
Q ss_conf             67657887438-8505886201224
Q gi|254780489|r  122 LVMADSYINSH-QKPVLIIAANLLS  145 (325)
Q Consensus       122 L~~A~~~i~~g-~~~vLVv~~e~~S  145 (325)
                      +..|...|++| .+.+|+++.|.+|
T Consensus        97 ~~~A~~~I~sG~~dvvla~G~e~ms  121 (408)
T PRK06289         97 TLAAIADLRSGAYDVALVVGLELEK  121 (408)
T ss_pred             HHHHHHHHHCCCCCEEEEEEEEECC
T ss_conf             9999999974888779998888626


No 46 
>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.57  E-value=1.3e-13  Score=108.91  Aligned_cols=274  Identities=16%  Similarity=0.209  Sum_probs=150.0

Q ss_pred             CCCEEEEEEEEECCCCCCCHHHHHHHH-C-CC-HHHEE--ECCCCCEEEE-----------ECCC-----CCHHHHHHHH
Q ss_conf             662099999973588613888999880-9-99-76831--1147508899-----------4898-----8799999999
Q gi|254780489|r    3 KSSSCILGFGHAVPNQCIHNSIIERHL-N-LK-LGVIE--QKTGIKYRYW-----------AEKH-----ETLTDIAIQA   61 (325)
Q Consensus         3 ~~~~~I~g~g~~lP~~~i~n~~l~~~~-~-~~-~~~i~--~~tGI~~R~~-----------~~~~-----e~~~~la~~A   61 (325)
                      ++++.|+|+|...|.-. +-+++-+.+ . .+ ...+.  .......++-           ..+.     ....-|+..+
T Consensus         1 ~rRVvItG~g~v~P~g~-~~e~fw~~L~~G~s~i~~~~~~d~~~~~~~~~g~i~~f~~~~~i~~~~~r~~d~~~~~~l~a   79 (411)
T PRK07314          1 KRRVVVTGLGAVSPLGN-DVESTWKNLLAGKSGIGPITKFDTSDLAVKIAGEVKDFNPDDYMSRKEARRMDRFIQYGIAA   79 (411)
T ss_pred             CCCEEEECCEEECCCCC-CHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCCHHHCCCHHHHHHCCHHHHHHHHH
T ss_conf             99699981678898989-99999999980998365478666546876366781898957758999998559999999999


Q ss_pred             HHHHHHHCCCCCCCCC----EEEEEEEEE-----------------CC----CCCC-----CCCCCCCCCCCCCCCCCCC
Q ss_conf             9998643013222344----258843100-----------------23----6887-----4322112100238633342
Q gi|254780489|r   62 GDIALRNANIKKDSIS----LTLLATSTP-----------------DH----LLPP-----SSPLITHRLGLMQSGAIDL  111 (325)
Q Consensus        62 a~~aL~~a~~~~~dId----~ii~~s~t~-----------------d~----~~P~-----~a~~v~~~Lg~~~~~~~di  111 (325)
                      +++||++||+++++++    -|+.+|...                 +.    ..|.     .+.+|...+|++. +++-+
T Consensus        80 a~~Al~dAGl~~~~~~~~r~gv~vGt~~g~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~a~~is~~~~l~G-p~~tv  158 (411)
T PRK07314         80 AKQAVEDAGLEITEENADRIGVIIGSGIGGLETIEEQHITLHEKGPRRVSPFFVPMAIINMAAGHVSIRYGAKG-PNHSI  158 (411)
T ss_pred             HHHHHHHCCCCHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-CCCCC
T ss_conf             99999973999468086556899814776257699999999844955458520256650289999999839999-73111


Q ss_pred             CCCCCCCHHHHHHHHHHHHCCC-CEEEEEEECCC---------------CCC-------CCCCC-CCCCCCCCCCEEEEE
Q ss_conf             1012310125676578874388-50588620122---------------444-------46222-443432544200112
Q gi|254780489|r  112 TGACAGFLYALVMADSYINSHQ-KPVLIIAANLL---------------SRR-------INLED-KDTAIIFGDAAGAVV  167 (325)
Q Consensus       112 ~~~C~g~l~aL~~A~~~i~~g~-~~vLVv~~e~~---------------S~~-------~d~~d-~~~~~lfGDgA~A~i  167 (325)
                      +.+|++++.||..|..+|+.|. +.++|.++|..               |..       ..|-| ....+++|+||+++|
T Consensus       159 ~~aCsSsl~Al~~A~~~i~~G~~d~aivgg~~~~~~~~~~~~f~~~~~ls~~~~~p~~~~rPFD~~adG~v~gEGa~~vv  238 (411)
T PRK07314        159 VTACATGAHAIGDAARLIQYGDADVMVAGGAEAAITPLGIAGFAAARALSTRNDDPERASRPFDKDRDGFVMGEGAGILV  238 (411)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             14013799999999999985997765414524567889999999988874078998777773213799732256147885


Q ss_pred             ECCCCCCCC--CCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf             205765444--531135532136776527830698667654455655232245145434320100367898899740120
Q gi|254780489|r  168 LAPSPLKDK--SGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQP  245 (325)
Q Consensus       168 l~~~~~~~~--~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~  245 (325)
                      |++.+....  ..|...... .+...|...+     ..|           ..++        ....++++++|+++|+++
T Consensus       239 Le~~~~A~~~g~~i~a~i~G-~~~~~d~~~~-----~~p-----------~~~~--------~g~~~a~~~al~~agi~~  293 (411)
T PRK07314        239 LEELEHAKARGAKIYAEVVG-YGMTGDAYHM-----TAP-----------APDG--------EGAARAMVAALKDAGINP  293 (411)
T ss_pred             ECCHHHHHHCCCCEEEEEEE-EEECCCCCCC-----CCC-----------CCCC--------HHHHHHHHHHHHHHCCCC
T ss_conf             26599998779946899831-3764799888-----788-----------9860--------567889999999858996


Q ss_pred             CCCCEEEECCCCCHH-----HHHHHHHCCCCHHHHH-H-HHHHCCCCCCCHHHHHHHH---HHHHCCC
Q ss_conf             012246305654138-----9999997197865700-2-1854093300059999999---9980678
Q gi|254780489|r  246 QDINRFIPHQANSRI-----IQKVCEKIGLSKRIMV-N-SLKDFGNSSSASIPLSLSL---ENQRKPF  303 (325)
Q Consensus       246 ~did~~i~Hq~~~~~-----~~~~~~~lgi~~~~~~-~-~l~~~GN~~sAsi~~~L~~---~~~~g~i  303 (325)
                      +||||+-.|-.+-..     .+++.+.++=...+.+ . +=..+||+-+|+=.+.+-.   +++.+.+
T Consensus       294 ~~i~yIe~hgtgt~~~D~~E~~al~~~f~~~~~~~~i~S~K~~~GH~~~AsG~~~li~~~l~l~~~~i  361 (411)
T PRK07314        294 EDIDYINAHGTSTPAGDKAETQAIKRVFGEHAYKVAVSSTKSMTGHLLGAAGAVEAIFTVLAIRDQVI  361 (411)
T ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             33217997368787779889999999865558898764803310336888999999999999855952


No 47 
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.57  E-value=1.1e-13  Score=109.38  Aligned_cols=265  Identities=18%  Similarity=0.190  Sum_probs=150.4

Q ss_pred             CCCCCEEEEEEEEECCCCCCCHHHHHHHH-CCCHH--HEE--ECCCCCEEEEEC-CC---------------CCHHHHHH
Q ss_conf             96662099999973588613888999880-99976--831--114750889948-98---------------87999999
Q gi|254780489|r    1 MIKSSSCILGFGHAVPNQCIHNSIIERHL-NLKLG--VIE--QKTGIKYRYWAE-KH---------------ETLTDIAI   59 (325)
Q Consensus         1 M~~~~~~I~g~g~~lP~~~i~n~~l~~~~-~~~~~--~i~--~~tGI~~R~~~~-~~---------------e~~~~la~   59 (325)
                      |.+..+.|+|+|.-.|.- .+-+++-+.+ .-..+  .+.  ...+...|+... ++               .....++.
T Consensus         1 m~~rrVaItG~g~~~p~g-~~~e~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~~~~~~~~~~~d~~~~~~l   79 (414)
T PRK08722          1 MSKRRVVVTGMGMLSPVG-NTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCEEYMSKKDARKMDLFIQYGI   79 (414)
T ss_pred             CCCCCEEEECCEEECCCC-CCHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEECCCCCHHHCCCHHHHHHCCHHHHHHH
T ss_conf             999979998768689795-9999999999739983663784565579886657728889467589999986699999999


Q ss_pred             HHHHHHHHHCCCCCCCCCE----EEEEEEEE-----------------CCC----CC-----CCCCCCCCCCCCCCCCCC
Q ss_conf             9999986430132223442----58843100-----------------236----88-----743221121002386333
Q gi|254780489|r   60 QAGDIALRNANIKKDSISL----TLLATSTP-----------------DHL----LP-----PSSPLITHRLGLMQSGAI  109 (325)
Q Consensus        60 ~Aa~~aL~~a~~~~~dId~----ii~~s~t~-----------------d~~----~P-----~~a~~v~~~Lg~~~~~~~  109 (325)
                      +|+.+||+++|+++.+++.    +++++...                 ...    .|     ..+.++...+|++. +++
T Consensus        80 ~aa~~Al~dAGl~~~~~~~~r~Gv~vG~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~G-p~~  158 (414)
T PRK08722         80 AAGIQALDDSGLEVTEENAHRIGVAIGSGIGGLGLIEAGHKALVEKGPRKISPFFVPSTIVNMIAGHMSIMRGLRG-PNI  158 (414)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCC
T ss_conf             9999999962899432465644799940567177799999999854865458422224577899999999839989-872


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCC-CEEEEEEECCCCCC----------------------CCCCC-CCCCCCCCCCEEE
Q ss_conf             421012310125676578874388-50588620122444----------------------46222-4434325442001
Q gi|254780489|r  110 DLTGACAGFLYALVMADSYINSHQ-KPVLIIAANLLSRR----------------------INLED-KDTAIIFGDAAGA  165 (325)
Q Consensus       110 di~~~C~g~l~aL~~A~~~i~~g~-~~vLVv~~e~~S~~----------------------~d~~d-~~~~~lfGDgA~A  165 (325)
                      -++.+|++++.||..|.++|+.|. +.+++.++|..+..                      ..|-| ....+.+|+||++
T Consensus       159 tv~tACsS~l~Ai~~A~~~I~~G~~d~aivGG~~~~~~p~~~~~f~~~~~ls~~~~~p~~~~rPFD~~rdG~v~gEGa~~  238 (414)
T PRK08722        159 AISTACTTGLHNIGHAARMIAYGDADAMLAGGAEKASTPLGMGGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAGM  238 (414)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCEE
T ss_conf             53554078999999999998679857443277322038288999886531202589965465665579998353064218


Q ss_pred             EEECCCCCCCC--CCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf             12205765444--5311355321367765278306986676544556552322451454343201003678988997401
Q gi|254780489|r  166 VVLAPSPLKDK--SGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDL  243 (325)
Q Consensus       166 ~il~~~~~~~~--~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl  243 (325)
                      +||++.+....  ..|.... ...+...|....                ..-..++.        ....+++++|+++|+
T Consensus       239 ~vLe~~~~A~~rGa~i~a~i-~G~g~~~d~~~~----------------~~p~p~g~--------~~~~~m~~al~~agi  293 (414)
T PRK08722        239 MVLEEYEHAKARGAKIYAEL-VGFGMSGDAYHM----------------TSPSEDGS--------GGALAMEAAMRDAGI  293 (414)
T ss_pred             EEEEEHHHHHHCCCCCEEEE-EEEEECCCCCCC----------------CCCCCCHH--------HHHHHHHHHHHHCCC
T ss_conf             98700888986799743999-878753688888----------------66797579--------999999999987499


Q ss_pred             CCCCCCEEEECCCCCHH-----HHHHHHHCCCC-HHHHH-H-HHHHCCCCCCCHHHH
Q ss_conf             20012246305654138-----99999971978-65700-2-185409330005999
Q gi|254780489|r  244 QPQDINRFIPHQANSRI-----IQKVCEKIGLS-KRIMV-N-SLKDFGNSSSASIPL  292 (325)
Q Consensus       244 ~~~did~~i~Hq~~~~~-----~~~~~~~lgi~-~~~~~-~-~l~~~GN~~sAsi~~  292 (325)
                      +++||||+-.|--+-..     .+++.+.++-. .++.+ . +=..+||+-+|+=.+
T Consensus       294 ~~~~I~yI~aHGTgT~~gD~~E~~ai~~~fg~~~~~~~~v~S~Ks~iGH~~~AaG~~  350 (414)
T PRK08722        294 TGEQIGYVNAHGTSTPAGDVAEIKGIKRALGEAGSKQVLVSSTKSMTGHLLGAAGSV  350 (414)
T ss_pred             CHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             987886698635878775999999999996635789752147003302237888999


No 48 
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=99.56  E-value=1.2e-12  Score=102.60  Aligned_cols=221  Identities=19%  Similarity=0.152  Sum_probs=139.9

Q ss_pred             CCCCCEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf             96662099999973588613888999880999768311147508899489887999999999998643013222344258
Q gi|254780489|r    1 MIKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTL   80 (325)
Q Consensus         1 M~~~~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii   80 (325)
                      |.++++.|+|+|..=.            .+       +          .++.+..+|+.+|+++||++||++++|||-++
T Consensus         1 m~~r~vAIvGvG~t~f------------~~-------~----------~~~~s~~~L~~eA~~~Al~DAGl~~~dID~~~   51 (391)
T PRK08313          1 MAKRLAAVLGTGQTKY------------VA-------K----------RQDVSMAGLVREAIDRALADAGLTFDDIDAVV   51 (391)
T ss_pred             CCCCCEEEEEEECCCC------------CC-------C----------CCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEE
T ss_conf             9989889999865888------------88-------9----------99979999999999999997499989989999


Q ss_pred             EEEEEECCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCC----------
Q ss_conf             8431002368--874322112100238633342101231012567657887438-850588620122444----------
Q gi|254780489|r   81 LATSTPDHLL--PPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLSRR----------  147 (325)
Q Consensus        81 ~~s~t~d~~~--P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S~~----------  147 (325)
                      +++. ++...  ......+.+.||+...+.+.+..+|+++..++..|...|++| .+.+||++.|..+..          
T Consensus        52 ~g~~-~~~~~g~~~~~~~~~~~lG~~~~p~~~v~~~~asg~~a~~~A~~aI~sG~~d~vlv~g~ek~~~~~~~~~~~~~~  130 (391)
T PRK08313         52 VGKA-PDFFEGVMMPELFLADAIGATGKPLIRVHTAGSVGGSTAVVAASLVQSGKYRRVLAVAWEKQSESNAMWALSIPV  130 (391)
T ss_pred             EECC-CCCCCCCCCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCC
T ss_conf             9765-764555435578999970787884378825317899999999999974887789998740357765421014787


Q ss_pred             --------------------------------------------CCC----CCC-CC------------------CCCCC
Q ss_conf             --------------------------------------------462----224-43------------------43254
Q gi|254780489|r  148 --------------------------------------------INL----EDK-DT------------------AIIFG  160 (325)
Q Consensus       148 --------------------------------------------~d~----~d~-~~------------------~~lfG  160 (325)
                                                                  .||    .++ .+                  .-...
T Consensus       131 ~~~~~~g~~~~~~~Al~a~rym~~yG~t~E~lA~Vav~~r~~A~~NP~A~~r~~~lt~edvl~s~~Ia~PL~l~dc~~~s  210 (391)
T PRK08313        131 PFTKPVGAGAGGYFAPHVRAYIRRSGAPTHIGAMVAVKDRLNGAKNPYAHLHQPDITLEKVMASQMLWDPIRFDETCPSS  210 (391)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCEEECCCCHHHCCCCC
T ss_conf             42032447669999999999999869899999999999998761197300058999888803686475687503018989


Q ss_pred             CCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCC-CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHH
Q ss_conf             4200112205765444531135532136776527830698667-654455655232245145434320100367898899
Q gi|254780489|r  161 DAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTS-PAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLR  239 (325)
Q Consensus       161 DgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~  239 (325)
                      |||+|+||..++...+...-.         .....+.+.+... +.....++..            ......+..+++++
T Consensus       211 DGAaAvVl~s~e~a~~~~~~~---------~~~~~i~g~~~~~~~~~~~~~d~~------------~~~~~~~aa~~a~~  269 (391)
T PRK08313        211 DGACAVVIGDEEAADARVAEG---------HPVAWIHGTALRTEPLAFAGRDQV------------NPQAGRDAAAALWK  269 (391)
T ss_pred             CCCEEEEEECHHHHHHCCCCC---------CCEEEEEEEEEECCCCCCCCCCCC------------CCHHHHHHHHHHHH
T ss_conf             864799995399997524578---------972999999986588764556645------------50899999999999


Q ss_pred             HHCCCC--CCCCEEEECCCCCHHHHHHHHHCCCCH
Q ss_conf             740120--012246305654138999999719786
Q gi|254780489|r  240 KSDLQP--QDINRFIPHQANSRIIQKVCEKIGLSK  272 (325)
Q Consensus       240 ~~gl~~--~did~~i~Hq~~~~~~~~~~~~lgi~~  272 (325)
                      .+|+++  +|||.+-+|-.-..+.-...+.||+-+
T Consensus       270 ~Agi~~P~~DiDvaevyD~Ft~~~l~~lE~lGfc~  304 (391)
T PRK08313        270 AAGITDPIDEIDVAEIYVPFSWFEPMWLENLGFAP  304 (391)
T ss_pred             HCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCC
T ss_conf             75999951016478861564389999999839988


No 49 
>PRK05790 acetyl-CoA acetyltransferase; Provisional
Probab=99.55  E-value=9.1e-14  Score=109.83  Aligned_cols=98  Identities=14%  Similarity=0.162  Sum_probs=83.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887432211210023-863334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+.++++++|++++++|++||.|+++.+.+...-+..+..+.-..|++ .++++.|+..|+++++|+..|...
T Consensus        22 ~~~~~~~L~~~ai~~~l~r~gi~~~~Id~vi~G~~~~~g~g~n~aR~~~l~aGlp~~vp~~tV~r~CaSG~~Ai~~A~~~  101 (393)
T PRK05790         22 KDVSAVELGAIVIKAALERAGVPPEQVDEVIMGQVLQAGAGQNPARQAAIKAGLPVEVPALTINKVCGSGLKAVALAAQA  101 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             88999999999999999982989899998999933656655549999999679998876489963115768999999998


Q ss_pred             HHCC-CCEEEEEEECCCCCC
Q ss_conf             7438-850588620122444
Q gi|254780489|r  129 INSH-QKPVLIIAANLLSRR  147 (325)
Q Consensus       129 i~~g-~~~vLVv~~e~~S~~  147 (325)
                      |++| ...+|+++.|.+|+.
T Consensus       102 I~sG~~dvvlagGvEsmS~~  121 (393)
T PRK05790        102 IRAGDADIVVAGGQESMSQA  121 (393)
T ss_pred             HHCCCCCEEEEECCCCCCCC
T ss_conf             74799768999544324567


No 50 
>PRK06845 consensus
Probab=99.55  E-value=1.4e-13  Score=108.66  Aligned_cols=98  Identities=19%  Similarity=0.208  Sum_probs=82.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCC-CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236-887432211210023-86333421012310125676578
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHL-LPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADS  127 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~-~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~  127 (325)
                      .+.++.+|+.+|++.+|++++++|++||-++++++.+... -+..+..+.-..|++ .++++.|+.+|++++.|+.+|..
T Consensus        22 ~~~~~~~L~~~a~~~al~~~gi~~~~Id~vi~G~~~~~g~~~~~~aR~~aL~aGlp~~vp~~tV~~~CaSG~~Ai~~A~~  101 (392)
T PRK06845         22 KDLSATDLGVAAAKAALEQAGVSPEDIGHVVFGNVIQTGKDAIYLARHIGLKAGLPVGVPALTVNRLCGSGFEAIIQAAK  101 (392)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf             88999999999999999871979899798999815645654334999999976999888748884430388999999999


Q ss_pred             HHHCC-CCEEEEEEECCCCCC
Q ss_conf             87438-850588620122444
Q gi|254780489|r  128 YINSH-QKPVLIIAANLLSRR  147 (325)
Q Consensus       128 ~i~~g-~~~vLVv~~e~~S~~  147 (325)
                      .|++| .+-+|+++.|.+|+.
T Consensus       102 ~I~sG~~dvvlagGvEsmS~~  122 (392)
T PRK06845        102 LIYLGEAEAVLAGGVESMSQA  122 (392)
T ss_pred             HHHCCCCCEEEECCEECCCCC
T ss_conf             985799767886255205554


No 51 
>PRK06363 consensus
Probab=99.55  E-value=1.4e-13  Score=108.64  Aligned_cols=200  Identities=20%  Similarity=0.231  Sum_probs=128.6

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCC--CCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             8879999999999986430132223442588431002368--87432211210023--8633342101231012567657
Q gi|254780489|r   51 HETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLL--PPSSPLITHRLGLM--QSGAIDLTGACAGFLYALVMAD  126 (325)
Q Consensus        51 ~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~--P~~a~~v~~~Lg~~--~~~~~di~~~C~g~l~aL~~A~  126 (325)
                      +.+..+|+.+|++.||++++++|+|||-+++++.+.+...  ...+..++..+|+.  ..++..++.+|++++.++..|.
T Consensus        19 ~~s~~~L~~ea~~~Al~dAgl~~~dID~v~~g~~~~~~~~~~~~~~~~~a~~~Gl~~~~vp~~~v~~~C~SG~~Ai~~Aa   98 (387)
T PRK06363         19 ERSFRDLIVEAGIKAIEDANVSGEDIDAMYVGNMSGGRFVGQEHIGALIADYAGLNTLPIPATRVEAACASGGLALRQAV   98 (387)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf             97989999999999999809798999999998257543446130999999973998887654888663179999999999


Q ss_pred             HHHHCC-CCEEEEEEECCCCCCCCCC------------------------------------------------------
Q ss_conf             887438-8505886201224444622------------------------------------------------------
Q gi|254780489|r  127 SYINSH-QKPVLIIAANLLSRRINLE------------------------------------------------------  151 (325)
Q Consensus       127 ~~i~~g-~~~vLVv~~e~~S~~~d~~------------------------------------------------------  151 (325)
                      ..|++| ++.+++.+.|.+|+.-+..                                                      
T Consensus        99 ~~I~sG~~dvvlagG~E~ms~~~~~~~~~~~~~d~~~~~~~g~~~~~~~a~~a~~~~~~yG~tre~~a~~A~~s~~~A~~  178 (387)
T PRK06363         99 LAVASGYHDIVLAAGVEKMTDVGDATSALATAADREWEAFVGATFPSLYAMIAKRHMHEYGTTREQLAQVAVKNHENGAK  178 (387)
T ss_pred             HHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf             99974998689996013677887655422224453520013775189999999999999796999999999981664542


Q ss_pred             -------CCC------------------CCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCC
Q ss_conf             -------244------------------3432544200112205765444531135532136776527830698667654
Q gi|254780489|r  152 -------DKD------------------TAIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAG  206 (325)
Q Consensus       152 -------d~~------------------~~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~  206 (325)
                             ++.                  .+-...|||+|+||..++...+.+.-.......+...+...           
T Consensus       179 np~a~~~~~~t~d~~~~~~~i~~pl~~~d~s~~sDGAaAvvl~s~e~A~~~~~~pv~i~g~~~~~~~~~-----------  247 (387)
T PRK06363        179 NPYAQFRNEITVDQVLNSSMVADPLRLLDCSPVSDGAAAVIVCPAEKAREYTDTPIYIKASAQASDTIA-----------  247 (387)
T ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCEEEEECCHHHHHHCCCCCEEEEEEEEEECCCC-----------
T ss_conf             850015787547552266656665315552466888348997159999865999579999999835544-----------


Q ss_pred             CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCH
Q ss_conf             455655232245145434320100367898899740120012246305654138999999719786
Q gi|254780489|r  207 TNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSK  272 (325)
Q Consensus       207 ~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~  272 (325)
                      ....         +++.  ........++++++++|++++|||.+=+|-+-...--...+.||+.+
T Consensus       248 ~~~~---------~~~~--~~~~~~~a~~~a~~~AGl~~~DiD~~Ei~eaFa~~~l~~~e~lGl~~  302 (387)
T PRK06363        248 LHDR---------KDIT--TLDATVVASKKAYEMAGLTPKDIDVAEVHDCFTIAELCAIEDLGFCK  302 (387)
T ss_pred             CCCC---------CCCC--CCCHHHHHHHHHHHHHCCCHHHCCEEEECCCCHHHHHHHHHHCCCCC
T ss_conf             5678---------8644--57716999999999849998887576411101688999999819985


No 52 
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=99.54  E-value=7.2e-13  Score=103.99  Aligned_cols=227  Identities=19%  Similarity=0.147  Sum_probs=141.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             988799999999999864301322234425884310023688--743221121002386333421012310125676578
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLP--PSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADS  127 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P--~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~  127 (325)
                      ++.+..+|+.+|+++||++||++++|||.+++++. |+....  -.+.++.+.+|....+...+..+|+++..++..|..
T Consensus        26 ~~~s~~eL~~eA~~~Al~DAGl~~~dID~~~~g~~-~~~~~g~~~~~~~~~~~~g~~~~p~~~v~~~~asg~~a~~~A~~  104 (393)
T PRK06065         26 MLETPQELAWEAARQALDEAGLELKDIDCVVIGSA-PDAFDGVHMKGEYLAHGSGGIRKPVSRVFVGGATGVMVPIAGWY  104 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEECC-CCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf             99999999999999999984999899899999556-76545432036899975477788447874452788999999999


Q ss_pred             HHHCC-CCEEEEEEECCCCCC-----------CCC--C------------------------------------------
Q ss_conf             87438-850588620122444-----------462--2------------------------------------------
Q gi|254780489|r  128 YINSH-QKPVLIIAANLLSRR-----------INL--E------------------------------------------  151 (325)
Q Consensus       128 ~i~~g-~~~vLVv~~e~~S~~-----------~d~--~------------------------------------------  151 (325)
                      .|++| .+.+||++.|.++..           .|+  .                                          
T Consensus       105 ~I~sG~~d~vlvvg~ek~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~Al~a~rym~~yG~t~E~lA~Vav~~r~~A~~  184 (393)
T PRK06065        105 HVASGLCKKVLAVAEEKMSPARPHPQSVFRYIWDPILEKPLNPNLIWIFAMEMHRYMHVCGVKKEDIALVSVKNKRNALN  184 (393)
T ss_pred             HHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             98678776899987404688876631466630350113667886799999999999998499999999999999998744


Q ss_pred             C-------CC-------C-----------CCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCC
Q ss_conf             2-------44-------3-----------432544200112205765444531135532136776527830698667654
Q gi|254780489|r  152 D-------KD-------T-----------AIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAG  206 (325)
Q Consensus       152 d-------~~-------~-----------~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~  206 (325)
                      +       +.       +           .-..+|||+|+||..++...+..--...+...+...+.        ..   
T Consensus       185 NP~A~~r~~~t~edvl~S~~Ia~PL~l~Dc~~~sDGAaAvVl~s~e~A~~l~~~pv~I~g~g~~~~~--------~~---  253 (393)
T PRK06065        185 NPYAQLAANITVEDVLNSEVLVWPVQLLDVSPVSDGAAAMVLASEDVARRYTDTPVWVEGVGWTLDN--------TE---  253 (393)
T ss_pred             CCHHHCCCCCCHHHHCCCCCCHHCCCHHHCCCCCCCEEEEEEECHHHHHHCCCCCEEEEEEEEECCC--------CC---
T ss_conf             9296647999968860474122132425318878821899994489997568997899999974367--------66---


Q ss_pred             CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCC--CCCCEEEECCCCCHHHHHHHHHCCCCHH----H------
Q ss_conf             455655232245145434320100367898899740120--0122463056541389999997197865----7------
Q gi|254780489|r  207 TNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQP--QDINRFIPHQANSRIIQKVCEKIGLSKR----I------  274 (325)
Q Consensus       207 ~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~--~did~~i~Hq~~~~~~~~~~~~lgi~~~----~------  274 (325)
                      ...++..            .........+++.+.+|+++  +|||.+-.|-.-...--...+.||+-+.    +      
T Consensus       254 ~~~~d~~------------~~~~~~~aa~~Ay~~AGi~~p~~DiDv~evyD~Ft~~el~~lE~lGfc~~Ge~~~~v~~G~  321 (393)
T PRK06065        254 WTNRDLA------------YPRYVEFAARMAYKMAGIERPRKEIDVAEPYDPFDYKELHHIEGLMLAKRGEAPKLLKEGV  321 (393)
T ss_pred             CCCCCCC------------CCHHHHHHHHHHHHHCCCCCCHHCCCEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHCCC
T ss_conf             4545533------------2179999999999976999972007379850675088999999849998983799997799


Q ss_pred             ------HHHH----HHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             ------0021----8540933000599999999980
Q gi|254780489|r  275 ------MVNS----LKDFGNSSSASIPLSLSLENQR  300 (325)
Q Consensus       275 ------~~~~----l~~~GN~~sAsi~~~L~~~~~~  300 (325)
                            .+.|    +--+||...|+=...+.++..+
T Consensus       322 ~~~~G~lPvNtsGGlls~Ghp~gatG~~~~~Ea~~Q  357 (393)
T PRK06065        322 FDRDGDIPSSPSGGLLGVGNPIAAAGLMKVISIYWQ  357 (393)
T ss_pred             CCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             567997135389710028885615699999999999


No 53 
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=99.54  E-value=2.1e-13  Score=107.50  Aligned_cols=96  Identities=17%  Similarity=0.128  Sum_probs=78.1

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             8879999999999986430132223442588431002368874322112-100238633342101231012567657887
Q gi|254780489|r   51 HETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITH-RLGLMQSGAIDLTGACAGFLYALVMADSYI  129 (325)
Q Consensus        51 ~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~-~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i  129 (325)
                      +..+.||+.+|++.||++++++|+|||.|+++...+.......+..+.- .++...++++.|+.+|.+++.|+..|...|
T Consensus        20 ~~~a~eL~~~ai~~al~~agi~~~~Id~vi~G~~~~~g~g~n~ar~~~l~ag~~~~vp~~tV~~~CaSG~~Ai~~A~~~I   99 (393)
T cd00826          20 NDLAHEAGAKAIAAALEPAGVAAGAVEEACLGQVLGAGEGQNCAQQAAMHAGGLQEAPAIGMNNLCGSGLRALALAMQLI   99 (393)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             89999999999999999829698998989999258755554199999997599989976887684789999999999999


Q ss_pred             HCC-CCEEEEEEECCCCC
Q ss_conf             438-85058862012244
Q gi|254780489|r  130 NSH-QKPVLIIAANLLSR  146 (325)
Q Consensus       130 ~~g-~~~vLVv~~e~~S~  146 (325)
                      ++| .+.+|+++.|.+|.
T Consensus       100 ~sG~~dvvlagGvEsms~  117 (393)
T cd00826         100 AGGDANCILAGGFEKMET  117 (393)
T ss_pred             HCCCCCEEEEEEEEECCC
T ss_conf             769999899950550676


No 54 
>PRK08768 consensus
Probab=99.53  E-value=3.2e-13  Score=106.28  Aligned_cols=274  Identities=16%  Similarity=0.178  Sum_probs=151.7

Q ss_pred             CCCCEEEEEEEEECCCCCCCHHHHHHHH--CCC-HHHEEE--CCCCCEE-----------EEECC-----CCCHHHHHHH
Q ss_conf             6662099999973588613888999880--999-768311--1475088-----------99489-----8879999999
Q gi|254780489|r    2 IKSSSCILGFGHAVPNQCIHNSIIERHL--NLK-LGVIEQ--KTGIKYR-----------YWAEK-----HETLTDIAIQ   60 (325)
Q Consensus         2 ~~~~~~I~g~g~~lP~~~i~n~~l~~~~--~~~-~~~i~~--~tGI~~R-----------~~~~~-----~e~~~~la~~   60 (325)
                      |.+++.|+|+|...|.- .+-+++-+.+  |.+ ...+.+  ..+...+           .+..+     -+....++..
T Consensus         1 M~rrVvITGmG~vtp~G-~~~~~~w~~L~~G~s~i~~~~~~d~~~~~~~~~g~i~~fd~~~~~~~~~~~~~d~~~~~~l~   79 (411)
T PRK08768          1 MSRRVVVTGMGMVSPLG-NDLATSWDGIVHGRSGIGPITQIDASQFTTKIAGEIKNFDPTLFVSAKDVKKMDSFIHYGVG   79 (411)
T ss_pred             CCCCEEEECCEEECCCC-CCHHHHHHHHHCCCCCEECCCCCCCCCCCCCEEEECCCCCHHHCCCHHHHHHCCHHHHHHHH
T ss_conf             98989998767789796-99999999998089855407756631487776554588792554899999756999999999


Q ss_pred             HHHHHHHHCCCCCCCC-----CEEEEEEEEEC-----------------CCCC---------CCCCCCCCCCCCCCCCCC
Q ss_conf             9999864301322234-----42588431002-----------------3688---------743221121002386333
Q gi|254780489|r   61 AGDIALRNANIKKDSI-----SLTLLATSTPD-----------------HLLP---------PSSPLITHRLGLMQSGAI  109 (325)
Q Consensus        61 Aa~~aL~~a~~~~~dI-----d~ii~~s~t~d-----------------~~~P---------~~a~~v~~~Lg~~~~~~~  109 (325)
                      |+++||++||++++++     ++++ ++.+..                 ...|         ..+..|...+|++. +++
T Consensus        80 aa~~Al~dAGl~~~~~~~~r~Gv~v-Gt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g~~G-p~~  157 (411)
T PRK08768         80 ASFMALDDSGLEINESNAERVGAIL-GSGIGGLLGIEEQTIKFHEGGARKISPFYVPSTIINMLPGQVSLIKGLKG-PTF  157 (411)
T ss_pred             HHHHHHHHHCCCHHHCCCCCEEEEE-ECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCC
T ss_conf             9999977418990014765527999-22666530278999999856855468225566676689999999819989-762


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCC-CEEEEEEECCCCCC----------------------CCCCC-CCCCCCCCCCEEE
Q ss_conf             421012310125676578874388-50588620122444----------------------46222-4434325442001
Q gi|254780489|r  110 DLTGACAGFLYALVMADSYINSHQ-KPVLIIAANLLSRR----------------------INLED-KDTAIIFGDAAGA  165 (325)
Q Consensus       110 di~~~C~g~l~aL~~A~~~i~~g~-~~vLVv~~e~~S~~----------------------~d~~d-~~~~~lfGDgA~A  165 (325)
                      .+..+|++++.||..|.++|++|. +.+++.++|.....                      ..|-| +...+++|+||++
T Consensus       158 tv~taCaS~l~Al~~A~~~i~~G~~d~~ivgg~~~~~~p~~~~~f~~l~~ls~~~~~P~~~~rPFd~~rdG~v~gEGa~~  237 (411)
T PRK08768        158 SAVSACATSNHSIGTAMRMIQHGDADVMLAGGAERGSSPSSVGGFCAMKAMSTRNDDPTGASRPWDKQRDGFVLGDGAGV  237 (411)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCEEEE
T ss_conf             53541137889999999998678867455264202158788999998654520378988766666579998686680489


Q ss_pred             EEECCCCCCCCC--CCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf             122057654445--311355321367765278306986676544556552322451454343201003678988997401
Q gi|254780489|r  166 VVLAPSPLKDKS--GILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDL  243 (325)
Q Consensus       166 ~il~~~~~~~~~--~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl  243 (325)
                      +||++.+...+.  .|.. ++...+...|....                ..-..++        ..+.+.++++|+++++
T Consensus       238 ~vLe~~e~A~~rga~i~a-~i~g~~~~~d~~~~----------------~~p~~~~--------~~~~~~~~~al~~a~~  292 (411)
T PRK08768        238 LVLEEYEHAKARGARIYA-ELVGFGASSDAFHM----------------TAPSEDG--------EGAARSMAAAMRDAKL  292 (411)
T ss_pred             EEECCHHHHHHCCCCEEE-EEEEEEECCCCCCC----------------CCCCCCH--------HHHHHHHHHHHHHCCC
T ss_conf             997148889867990789-99778761478888----------------7889777--------9999999999997698


Q ss_pred             CCCCCCEEEECCCCCHHH-----HHHHHHCCCCHHHHH-H-HHHHCCCCCCCHHHHHHH---HHHHHCCC
Q ss_conf             200122463056541389-----999997197865700-2-185409330005999999---99980678
Q gi|254780489|r  244 QPQDINRFIPHQANSRII-----QKVCEKIGLSKRIMV-N-SLKDFGNSSSASIPLSLS---LENQRKPF  303 (325)
Q Consensus       244 ~~~did~~i~Hq~~~~~~-----~~~~~~lgi~~~~~~-~-~l~~~GN~~sAsi~~~L~---~~~~~g~i  303 (325)
                      +++||||+-.|--+-..-     +++.+.++=...+.+ . +=..+||+-+|+=.+.+.   .+++.+.+
T Consensus       293 ~~~~i~yi~aHgtgT~~~D~~E~~ai~~~fg~~~~~~~i~s~Ks~~GH~~~aaG~~~~~~~~l~l~~~~i  362 (411)
T PRK08768        293 NPEQIGYLNAHGTSTPLGDLAETMAMKRALGDHAYKTMVSSTKSMTGHLLGAAGGVEAIFSVMALHTGII  362 (411)
T ss_pred             CCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9310248996756675539999999999856789987478944554320899999999999999716973


No 55 
>PRK06158 thiolase; Provisional
Probab=99.53  E-value=9e-13  Score=103.33  Aligned_cols=196  Identities=17%  Similarity=0.130  Sum_probs=124.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             98879999999999986430132223442588431002368874322112100238633342101231012567657887
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYI  129 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i  129 (325)
                      ++.+..+|+.+|+++||++||++++|||-+++++...  ..  ....+++.||++......+..+|+++..++..|...|
T Consensus        24 ~~~s~~eL~~eA~~~Al~DAGi~~~dID~~~~g~~~~--~~--~g~~~a~~lGl~~~~~~~~~~ggas~~~al~~A~~aI   99 (384)
T PRK06158         24 PGLSAMELLAQAAVRALADAGLTMADVDGLFTASPDS--AL--WGLSVAEYLGIRPRFVDGTMIGGSSFVSHLLPAALAL   99 (384)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCC--CC--HHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             9979999999999999997599999909899971576--65--3999999829998124366668689999999999999


Q ss_pred             HCC-CCEEEEEEECCCCCC-------C-------------------------------------------------CCC-
Q ss_conf             438-850588620122444-------4-------------------------------------------------622-
Q gi|254780489|r  130 NSH-QKPVLIIAANLLSRR-------I-------------------------------------------------NLE-  151 (325)
Q Consensus       130 ~~g-~~~vLVv~~e~~S~~-------~-------------------------------------------------d~~-  151 (325)
                      ++| .+.|||+..+..+..       .                                                 ||. 
T Consensus       100 ~sG~~d~vlV~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~Al~a~rym~~yG~t~E~lA~vavk~r~nA~~NP~A  179 (384)
T PRK06158        100 EAGLCDVALICYGSNQRSAGGKLVSMLDPQPYEAPYKPVNPVTAYALAAARHMHQYGTTREQLAEVAVAARQWAQLNPEA  179 (384)
T ss_pred             HCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             85885389995235555566554335687444432355546889999999999997988999999999999987069863


Q ss_pred             ---C---------------CCC---CCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             ---2---------------443---4325442001122057654445311355321367765278306986676544556
Q gi|254780489|r  152 ---D---------------KDT---AIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTH  210 (325)
Q Consensus       152 ---d---------------~~~---~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  210 (325)
                         +               +.+   .-..+|||+|+||..++...+.+--..            .+.+.+.......   
T Consensus       180 ~~r~~it~edvl~s~~Ia~PL~l~dc~~~sDGAaAvVl~s~e~Ar~l~~~pV------------~i~g~g~~~~~~~---  244 (384)
T PRK06158        180 FMRDPLTIDDVLAARMVSDPLSVRDCCLVTDGAGAVVMVRADRARDLPRPPV------------YVLGAAAATWHRQ---  244 (384)
T ss_pred             CCCCCCCHHHHHCCCCCCCCHHHCCCCCCCCCEEEEEEECHHHHHHCCCCCE------------EEEEEEEECCCCC---
T ss_conf             1378879999721535456600114665666348999952888844799957------------9999998616876---


Q ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCH
Q ss_conf             55232245145434320100367898899740120012246305654138999999719786
Q gi|254780489|r  211 DFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSK  272 (325)
Q Consensus       211 ~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~  272 (325)
                           ....+++.   .....+..+++++++|++++|||.+-.|-.-...--...+.||+-+
T Consensus       245 -----~~~~~d~~---~~~~~~aa~~A~~~AGi~p~DiDvaev~D~Ft~~~l~~~E~lG~~~  298 (384)
T PRK06158        245 -----ISSMPDLT---VTAAAESGPRAFAMAGVTPADIDVVELYDAFTINTILFLEDLGFCA  298 (384)
T ss_pred             -----CCCCCCCC---HHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHHHHHHHHCCCCC
T ss_conf             -----43355210---2799999999999809997778788641776088999999849998


No 56 
>PRK06365 acetyl-CoA acetyltransferase; Provisional
Probab=99.52  E-value=2.2e-12  Score=100.82  Aligned_cols=241  Identities=16%  Similarity=0.128  Sum_probs=141.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             988799999999999864301322234425884310023688--743221121002386333421012310125676578
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLP--PSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADS  127 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P--~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~  127 (325)
                      ++.+..+|+.+|+++||++||++++|||-++++.. ++....  .....+++.||+.+.++..+.++|+++..++..|..
T Consensus        19 ~~~~~~~l~~eA~~~AL~DAGl~~~dIDg~v~~~~-~~~~~~~~~~g~~~~~~lGl~~~p~~~ve~~casg~~a~~~A~~   97 (415)
T PRK06365         19 PNMDFRLRVKKAFDYAMNDAGLTLADIDGSVASYF-SDHFQRQLMAGIMVQDYLGLVPKPSKRIEGGGATGGLAFQAGYE   97 (415)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEC-CCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf             99889999999999999975999899698889841-78664210055899997188886425773772899999999999


Q ss_pred             HHHCC-CCEEEEEEECCCCCCC------------C--CCCC---------------------------------------
Q ss_conf             87438-8505886201224444------------6--2224---------------------------------------
Q gi|254780489|r  128 YINSH-QKPVLIIAANLLSRRI------------N--LEDK---------------------------------------  153 (325)
Q Consensus       128 ~i~~g-~~~vLVv~~e~~S~~~------------d--~~d~---------------------------------------  153 (325)
                      .|++| .+.+||++.|.+|..-            |  +..+                                       
T Consensus        98 ~I~sG~~d~vlv~G~ek~s~~~~~~~~~~~~~~~d~~~e~p~g~~~~~~~Al~a~rym~~yG~t~e~lA~Vavk~r~~A~  177 (415)
T PRK06365         98 EIASGRMDVVAVYGFETMSHVNTWKGNEFIALASDTNFDYPIGGFYTGYYAMMAVRHMYEFGTTVEQMAKVSVKNHGNAI  177 (415)
T ss_pred             HHHCCCCCEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf             99708787899974114567886665311102566553454555448899999999999869889999999999877552


Q ss_pred             -------------------------CC---CCCCCCCEEEEEECCCCCCCCC-----CCEEEEEEECCCCCCEEEEECCC
Q ss_conf             -------------------------43---4325442001122057654445-----31135532136776527830698
Q gi|254780489|r  154 -------------------------DT---AIIFGDAAGAVVLAPSPLKDKS-----GILGIELTSDGSKYDLIKIPTGG  200 (325)
Q Consensus       154 -------------------------~~---~~lfGDgA~A~il~~~~~~~~~-----~il~~~~~s~~~~~~~~~~~~~~  200 (325)
                                               .+   .-..+|||+|+||..++...+.     .|...-..++     ...+....
T Consensus       178 ~NP~A~~~~~iTvedvl~s~~Ia~PL~lldcc~~sDGAaAvVl~see~Ar~~~~~pV~I~g~g~~~~-----~~~~~~r~  252 (415)
T PRK06365        178 HNPYAQSPMKLTVEDVRKAPMVSYPLTRLDVCAMSDGAAVAILASEDKAFEITDHPVLIKAIGTGTD-----TMRLADRP  252 (415)
T ss_pred             CCHHHHCCCCCCHHHHHCCCCCCCCCHHHCCCCCCCCEEEEEEECHHHHHHCCCCCEEEEEEEEECC-----CCCCCCCC
T ss_conf             5937648888998998318844367202126888886499999458988655799779999997125-----42003454


Q ss_pred             C-CCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCC--CCCCEEEECCCCCHHHHHHHHHCCCCHH----
Q ss_conf             6-67654455655232245145434320100367898899740120--0122463056541389999997197865----
Q gi|254780489|r  201 S-TSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQP--QDINRFIPHQANSRIIQKVCEKIGLSKR----  273 (325)
Q Consensus       201 ~-~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~--~did~~i~Hq~~~~~~~~~~~~lgi~~~----  273 (325)
                      . ..|.-.......+....-+.+.  ..+......+++++++|+++  +|||.+-+|-.-...--...+.||+-+.    
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Aa~~Ay~~AGi~~p~~DiDv~ev~D~Ft~~el~~lE~lGfc~~Geg~  330 (415)
T PRK06365        253 FGEVPLLPNENPSDYKNLKYPGVH--SFRAGRMAAKEAYERANITDPLNDLDLIELHDAYTSSEIQTYEDLGLCKYGEGG  330 (415)
T ss_pred             CCCCCCCCCCCCCHHHCCCCCCCC--CHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCHH
T ss_conf             444544445672011023455410--027999999999997499996145877998457629999999984998898389


Q ss_pred             ------------HHHHH----HHHCCCCCCCHHHHHHHHHH
Q ss_conf             ------------70021----85409330005999999999
Q gi|254780489|r  274 ------------IMVNS----LKDFGNSSSASIPLSLSLEN  298 (325)
Q Consensus       274 ------------~~~~~----l~~~GN~~sAsi~~~L~~~~  298 (325)
                                  +++.|    +--+||...|+-...+.++.
T Consensus       331 ~~v~~G~~~~~G~lPvN~sGGlls~Ghp~GatG~~q~vE~~  371 (415)
T PRK06365        331 QFIDEGKPELDGKIPVNPSGGLLAAGHPVGATGIMQAVFMF  371 (415)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHH
T ss_conf             99977996689971267885233078656513999999999


No 57 
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=99.51  E-value=5.1e-13  Score=104.96  Aligned_cols=98  Identities=9%  Similarity=0.030  Sum_probs=82.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEE-CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100-236887432211210023-86333421012310125676578
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTP-DHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADS  127 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~-d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~  127 (325)
                      .+.++.+|+..+.+.+|++++++|++||.++++...+ ....+..+..+.-..|++ .++++.|+..|++++.|+..|.+
T Consensus        22 ~~~~~~~L~a~ai~~~l~r~~i~p~~Id~vi~G~v~~~g~~~~n~aR~~~L~aGlp~~vpa~tVn~~CaSGl~Av~~A~~  101 (382)
T PRK07801         22 AGVHPADLGAHVLRGLVDRNDIDPAAVDDVIFGCVDAIGPQAGNIARTSWLAAGYPEEVPGVTVDRQCGSSQQAIHFAAQ  101 (382)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf             99999999999999999980979899898999716665665567999999976999888648884121589999999998


Q ss_pred             HHHCC-CCEEEEEEECCCCCC
Q ss_conf             87438-850588620122444
Q gi|254780489|r  128 YINSH-QKPVLIIAANLLSRR  147 (325)
Q Consensus       128 ~i~~g-~~~vLVv~~e~~S~~  147 (325)
                      .|++| ..-+|+++.|.+|+.
T Consensus       102 ~I~~G~~dv~lagGvEsMS~~  122 (382)
T PRK07801        102 AIMSGTADVIVAGGVQNMSQI  122 (382)
T ss_pred             HHCCCCCCEEEECCEEECCCC
T ss_conf             862899674665154322557


No 58 
>PRK07025 consensus
Probab=99.50  E-value=4.2e-13  Score=105.51  Aligned_cols=98  Identities=14%  Similarity=0.136  Sum_probs=82.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887432211210023-863334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+..+++.+|++++++|++||-||++.+.+...-+..+..+.-..|++ .++++.|+..|.+++.|+..|...
T Consensus        22 ~~~~~~~L~~~~i~~~l~r~~i~~~~Id~vi~G~v~~~g~g~n~aR~~al~aGlp~~vp~~tVnr~C~SGl~Ai~~Aa~~  101 (393)
T PRK07025         22 AKIAAPELGATVIRAVLERAGVKPEQVSEVILGQVLTAGSGQNPARQALIKAGLPNAVPGMTINKVCGSGLKAVMLAANA  101 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf             88989999999999999982989899898999924765556649999999769998886488841536778999999999


Q ss_pred             HHCCC-CEEEEEEECCCCCC
Q ss_conf             74388-50588620122444
Q gi|254780489|r  129 INSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       129 i~~g~-~~vLVv~~e~~S~~  147 (325)
                      |++|. .-+|+.+.|.+|+.
T Consensus       102 I~~G~~dvvlagGvEsmS~~  121 (393)
T PRK07025        102 IVAGDAEIVVAGGQENMSAA  121 (393)
T ss_pred             HHCCCCCEEEEEEEEECCCC
T ss_conf             86799766788601103567


No 59 
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=99.50  E-value=2.6e-13  Score=106.84  Aligned_cols=98  Identities=11%  Similarity=0.050  Sum_probs=83.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887432211210023-863334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+..+.+.+|++++++|++||.||++.+.+...-+..+..++-..|++ .++++.|+..|.+++.|+..|.+.
T Consensus        22 ~~~~~~~L~~~~i~~~l~~~gl~~~~Id~vi~G~v~~~~~g~n~ar~~al~aGlp~~vp~~tVnr~C~Sgl~Ai~~A~~~  101 (388)
T PRK06366         22 SKIKAPQLGGAAIKAVIDDAKLDPALVQEVIMGNVIQAGVGQNPAGQAAYHAGLPFGVTKYTVNVVCASGMLAVESAARE  101 (388)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             88998999999999999871989899898999952754556519999999759998886588857255999999999999


Q ss_pred             HHCC-CCEEEEEEECCCCCC
Q ss_conf             7438-850588620122444
Q gi|254780489|r  129 INSH-QKPVLIIAANLLSRR  147 (325)
Q Consensus       129 i~~g-~~~vLVv~~e~~S~~  147 (325)
                      |++| ..-+++.+.|.+|+.
T Consensus       102 I~sG~~dvviagGvEsMS~~  121 (388)
T PRK06366        102 IMLGERDLVIAGGMENMSNA  121 (388)
T ss_pred             HHCCCCCEEEEECCCCCCCC
T ss_conf             96699876787042214578


No 60 
>PRK06689 consensus
Probab=99.50  E-value=4.9e-13  Score=105.07  Aligned_cols=98  Identities=12%  Similarity=0.128  Sum_probs=81.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887432211210023-863334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+..+.+.+|++++++|++||-||++.+.+.-..+..|..++-.-|++ .++++.|+..|.+++.|+..|.+.
T Consensus        22 ~~~~~~~L~a~~i~~~l~r~gi~p~~Id~vi~G~~~~~g~~~n~AR~aaL~aGlp~~vp~~tVnr~C~Sgl~Ai~~aa~~  101 (391)
T PRK06689         22 KNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQRTDEANTARTAALAAGFPDTVTGYTIQRQCSSGMQAIMSAAMQ  101 (391)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHH
T ss_conf             88988999999999999874999799898999806676666609999999769998887067766215789999999999


Q ss_pred             HHCCCC-EEEEEEECCCCCC
Q ss_conf             743885-0588620122444
Q gi|254780489|r  129 INSHQK-PVLIIAANLLSRR  147 (325)
Q Consensus       129 i~~g~~-~vLVv~~e~~S~~  147 (325)
                      |++|.. -++..+.|.+|+.
T Consensus       102 I~~G~~dvviAGGvEsMS~~  121 (391)
T PRK06689        102 IQLGVSEVVVAGGVEAMSSS  121 (391)
T ss_pred             HHCCCCCEEEEECCCCCCCC
T ss_conf             86799865686043467777


No 61 
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=99.49  E-value=7.3e-13  Score=103.92  Aligned_cols=98  Identities=13%  Similarity=0.152  Sum_probs=82.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887432211210023-863334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+..+.+++|++++++|++||.||++.+.+...-+..+..+.-.-|++ .++++.|+..|.+++.|+..|...
T Consensus        27 ~~~~~~~L~a~~i~~~l~r~~~~~~~Id~vi~G~~~~~g~g~n~aR~~~L~aGlp~~vpa~tVnr~C~SGl~Ai~~a~~~  106 (397)
T PRK06954         27 ASLTAPQLGAAAIAAAVERAGLKPEQIDEVVMGCVLPAGQGQAPARQAALGAGLPLSVGCTTVNKMCGSGMRAAMFAHDM  106 (397)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHH
T ss_conf             89999999999999999873989899798999823655656649999999769998887788726658999999999999


Q ss_pred             HHCCC-CEEEEEEECCCCCC
Q ss_conf             74388-50588620122444
Q gi|254780489|r  129 INSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       129 i~~g~-~~vLVv~~e~~S~~  147 (325)
                      |++|. +-+|+.+.|.+|+.
T Consensus       107 I~sG~~dvvlagGvEsmS~~  126 (397)
T PRK06954        107 LVAGSVDVIVAGGMESMTNA  126 (397)
T ss_pred             HHCCCCCEEEEECCCCCCCC
T ss_conf             96799745676334456767


No 62 
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional
Probab=99.49  E-value=1.5e-12  Score=101.92  Aligned_cols=275  Identities=17%  Similarity=0.231  Sum_probs=152.8

Q ss_pred             CCCEEEEEEEEECCCCCCCHHHHHHHH--CCC-HHHEE--ECCCCCEE--------------EEE-----CCCCCHHHHH
Q ss_conf             662099999973588613888999880--999-76831--11475088--------------994-----8988799999
Q gi|254780489|r    3 KSSSCILGFGHAVPNQCIHNSIIERHL--NLK-LGVIE--QKTGIKYR--------------YWA-----EKHETLTDIA   58 (325)
Q Consensus         3 ~~~~~I~g~g~~lP~~~i~n~~l~~~~--~~~-~~~i~--~~tGI~~R--------------~~~-----~~~e~~~~la   58 (325)
                      .+.|.|+|+|..-|-- .+-+++-+-+  |.+ ...|.  ...+...+              ++.     ........++
T Consensus        60 ~rRVVITGiGiVsp~G-~~~e~fw~aL~~G~SGI~~i~~fd~~~~~~~iageV~~~df~p~~~~~~~k~~~r~dr~~~~a  138 (477)
T PTZ00050         60 TSRVVCTGIGVVNGLG-IGIEHFWENIINGYNSIDKITKFDITGMACGIGSEIDKKDFNPSDYYTNKKDANRNDDCTHYA  138 (477)
T ss_pred             CCCEEEECCHHHCCCC-CCHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEECCCCCCHHHCCCCHHHHHHHCHHHHHH
T ss_conf             7749995813317881-999999999975899814178667668977668860267889666047888885307999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCE----EEEEEEEE-----------------C----CCCC-----CCCCCCCCCCCCCCCCC
Q ss_conf             99999986430132223442----58843100-----------------2----3688-----74322112100238633
Q gi|254780489|r   59 IQAGDIALRNANIKKDSISL----TLLATSTP-----------------D----HLLP-----PSSPLITHRLGLMQSGA  108 (325)
Q Consensus        59 ~~Aa~~aL~~a~~~~~dId~----ii~~s~t~-----------------d----~~~P-----~~a~~v~~~Lg~~~~~~  108 (325)
                      +.|+++||++|+++++++|.    +++++...                 .    +..|     ..+..|+.++|++. ++
T Consensus       139 l~Aa~eAl~DAgl~~~~~~~~r~Gv~iGs~~gg~~~~e~~~~~l~~~g~~~v~p~~~~~~~~n~~a~~is~~~~l~G-ps  217 (477)
T PTZ00050        139 VAATRLAIDDAKIDLEKIDCDKTGTIIGSGIGGLLFLEKEMKTLYEKGHKRISPYLIPAMIANTPAGFVSIEHNIRG-IS  217 (477)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CC
T ss_conf             99999999967999543671015348704877389999999999854977438527778887699999999739948-75


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCC-CEEEEEEECC-CCCC----------C------C------CCC-CCCCCCCCCCE
Q ss_conf             3421012310125676578874388-5058862012-2444----------4------6------222-44343254420
Q gi|254780489|r  109 IDLTGACAGFLYALVMADSYINSHQ-KPVLIIAANL-LSRR----------I------N------LED-KDTAIIFGDAA  163 (325)
Q Consensus       109 ~di~~~C~g~l~aL~~A~~~i~~g~-~~vLVv~~e~-~S~~----------~------d------~~d-~~~~~lfGDgA  163 (325)
                      +.++.+|++++.||..|.++|+.|. +.+++-++|. .++.          +      +      |-| +...+.+|+||
T Consensus       218 ~ti~tACaSs~~AI~~A~~~Ir~G~~d~~IaGG~d~~l~p~~~~~f~~l~aL~s~~nd~P~~~~rPFD~~rdG~V~GEGa  297 (477)
T PTZ00050        218 LGMLSACATSGNTIGEAYRYIKYKEYDVMICGGTEASITPISFAGFNALKALCSGYNDNPKKGCRPFDLKRSGFVMGEGA  297 (477)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCE
T ss_conf             67044747889999999999975984559998456666728899999876554036789876724465899827723765


Q ss_pred             EEEEECCCCCCCCC--CCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             01122057654445--3113553213677652783069866765445565523224514543432010036789889974
Q gi|254780489|r  164 GAVVLAPSPLKDKS--GILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKS  241 (325)
Q Consensus       164 ~A~il~~~~~~~~~--~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~  241 (325)
                      +++||++.+.....  .|.+. +...+...|...+                ..-..+|        ..+.++++++|+++
T Consensus       298 g~lVLE~~e~A~~RGa~Iyae-i~G~~~~~Dg~~~----------------t~p~p~g--------~g~~~am~~AL~~A  352 (477)
T PTZ00050        298 GILILESYEHAIKRNAKIYGE-IIAYSSECDAFHI----------------TAPEPNG--------KGLCNSIHKAIKNA  352 (477)
T ss_pred             EEEEEEEHHHHHHCCCEEEEE-EECCCCCCCCCCC----------------CCCCCCH--------HHHHHHHHHHHHHH
T ss_conf             899972887776589988675-2055424689988----------------7749799--------99999999999971


Q ss_pred             CCCCCCCCEEEECCCCCHH-----HHHHHHHCCCCHHHHHH--HHHHCCCCCCCHHHHHHHH---HHHHCCCC
Q ss_conf             0120012246305654138-----99999971978657002--1854093300059999999---99806789
Q gi|254780489|r  242 DLQPQDINRFIPHQANSRI-----IQKVCEKIGLSKRIMVN--SLKDFGNSSSASIPLSLSL---ENQRKPFQ  304 (325)
Q Consensus       242 gl~~~did~~i~Hq~~~~~-----~~~~~~~lgi~~~~~~~--~l~~~GN~~sAsi~~~L~~---~~~~g~i~  304 (325)
                      +++++||||+-.|--+-..     .+++.+.++=...+++.  +=..+||+-+|+=.+.+..   +++.+.+.
T Consensus       353 gl~~~dIdyInaHGTgT~~gD~~E~~Ai~~vfg~~~~~~~VsS~Ks~iGH~lgAAGa~e~i~~llal~~g~iP  425 (477)
T PTZ00050        353 NININDVKYINAHGTSTNLNDKIETKVFKNVFKDHAYKLHISSTKSMTGHCIGAAGAIESIVCLKAMQTNIIP  425 (477)
T ss_pred             CCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEECCHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             7897450089961776887899999999998657899865888613330047999999999999998419438


No 63 
>TIGR03150 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2. FabB sequences should fall well below the noise cutoff of this model.
Probab=99.49  E-value=1.4e-12  Score=102.06  Aligned_cols=273  Identities=16%  Similarity=0.226  Sum_probs=149.0

Q ss_pred             CCEEEEEEEEECCCCCCCHHHHHHHH--CCC-HHHEEEC--CCCCEEEEE-----CCC-----------CCHHHHHHHHH
Q ss_conf             62099999973588613888999880--999-7683111--475088994-----898-----------87999999999
Q gi|254780489|r    4 SSSCILGFGHAVPNQCIHNSIIERHL--NLK-LGVIEQK--TGIKYRYWA-----EKH-----------ETLTDIAIQAG   62 (325)
Q Consensus         4 ~~~~I~g~g~~lP~~~i~n~~l~~~~--~~~-~~~i~~~--tGI~~R~~~-----~~~-----------e~~~~la~~Aa   62 (325)
                      +++.|+|+|.-.|.-. +-+++-+.+  +.+ ...+.+.  .+...++-.     ++.           ....-++.+++
T Consensus         1 rrVaItG~g~~~P~g~-~~~~~w~~L~~g~s~i~~~~~~d~~~~~~~~~g~v~~fd~~~~i~~~~a~~~dp~~~l~l~aa   79 (407)
T TIGR03150         1 RRVVVTGLGAVTPLGN-GVEEFWENLLAGKSGIGPITRFDASDLPVKIAGEVKDFDPEDYIDKKEARRMDRFIQYALAAA   79 (407)
T ss_pred             CEEEEEECEEECCCCC-CHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEECCCCHHHCCCHHHHHHCCHHHHHHHHHH
T ss_conf             9399984677897979-999999999739974443687786468775677727889466589999975199999999999


Q ss_pred             HHHHHHCCCCCCCCC----EEEEEEEE-----------------ECCC----CCC-----CCCCCCCCCCCCCCCCCCCC
Q ss_conf             998643013222344----25884310-----------------0236----887-----43221121002386333421
Q gi|254780489|r   63 DIALRNANIKKDSIS----LTLLATST-----------------PDHL----LPP-----SSPLITHRLGLMQSGAIDLT  112 (325)
Q Consensus        63 ~~aL~~a~~~~~dId----~ii~~s~t-----------------~d~~----~P~-----~a~~v~~~Lg~~~~~~~di~  112 (325)
                      .+||++||+.+++++    -|+++++.                 ++..    .|.     .+.+|...+|++. +++-+.
T Consensus        80 ~~Al~dAG~~~~~~~~~~~gv~~gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~is~~~~l~G-p~~tv~  158 (407)
T TIGR03150        80 KEAVEDSGLDIEEEDAERVGVIVGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINMAAGQISIRYGAKG-PNHAVV  158 (407)
T ss_pred             HHHHHHCCCCHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-CCCCCC
T ss_conf             9999863998445286645999925767457799999999853844458540157662589999999859999-644644


Q ss_pred             CCCCCCHHHHHHHHHHHHCCC-CEEEEEEECC-C--------------CCC-------CC-CCCCCCCCCCCCCEEEEEE
Q ss_conf             012310125676578874388-5058862012-2--------------444-------46-2224434325442001122
Q gi|254780489|r  113 GACAGFLYALVMADSYINSHQ-KPVLIIAANL-L--------------SRR-------IN-LEDKDTAIIFGDAAGAVVL  168 (325)
Q Consensus       113 ~~C~g~l~aL~~A~~~i~~g~-~~vLVv~~e~-~--------------S~~-------~d-~~d~~~~~lfGDgA~A~il  168 (325)
                      .+|++++.||..|..+|+.|. +.++|.++|. +              |..       .. ++.....+.+|+||+++||
T Consensus       159 taCsSsl~Al~~A~~~i~~G~~d~aivGG~~~~l~~~~~~~f~~~~~ls~~~~~p~~~~rPFD~~a~G~v~gEGa~~vvL  238 (407)
T TIGR03150       159 TACATGTHAIGDAFRLIQYGDADVMIAGGAEAAITPLGIAGFAAMKALSTRNDDPEKASRPFDKDRDGFVMGEGAGVLVL  238 (407)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             44389999999999998739854655037443579899999998877730678987776542247997445484578740


Q ss_pred             CCCCCCC--CCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf             0576544--45311355321367765278306986676544556552322451454343201003678988997401200
Q gi|254780489|r  169 APSPLKD--KSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQ  246 (325)
Q Consensus       169 ~~~~~~~--~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~  246 (325)
                      ++.+...  +..|...... .+...|...+     ..|           ..++        ....++++++|++++++++
T Consensus       239 e~~~~A~~~g~~I~a~i~g-~g~~~d~~~~-----t~~-----------~p~~--------~~~~~~i~~al~~agi~~~  293 (407)
T TIGR03150       239 EELEHAKARGAKIYAEIVG-YGMSGDAYHI-----TAP-----------APEG--------EGAARAMRAALKDAGINPE  293 (407)
T ss_pred             CCHHHHHHCCCEEEEEEEE-EEEECCCCCC-----CCC-----------CCCC--------HHHHHHHHHHHHHHCCCCC
T ss_conf             6699998779968999821-0550158876-----465-----------9981--------6788899999998689986


Q ss_pred             CCCEEEECCCCCHH-----HHHHHHHCCCCHHHHH--HHHHHCCCCCCCHHHHHHH---HHHHHCCC
Q ss_conf             12246305654138-----9999997197865700--2185409330005999999---99980678
Q gi|254780489|r  247 DINRFIPHQANSRI-----IQKVCEKIGLSKRIMV--NSLKDFGNSSSASIPLSLS---LENQRKPF  303 (325)
Q Consensus       247 did~~i~Hq~~~~~-----~~~~~~~lgi~~~~~~--~~l~~~GN~~sAsi~~~L~---~~~~~g~i  303 (325)
                      |||++-.|-.+-..     .+++.+.++=...+.+  .+=..+||+-.|+=.+.+-   .+++.+.+
T Consensus       294 ~I~yIe~Hgtgt~~~D~~E~~al~~~fg~~~~~~~i~S~K~~~GH~~~AaG~~~lik~~l~l~~~~i  360 (407)
T TIGR03150       294 DVDYINAHGTSTPLGDKAETKAIKRVFGDHAYKLAVSSTKSMTGHLLGAAGAIEAIFTVLAIRDGVV  360 (407)
T ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             3349997368787769999999999862568986578855554314899999999999999825963


No 64 
>PRK07491 consensus
Probab=99.48  E-value=1.1e-12  Score=102.84  Aligned_cols=98  Identities=17%  Similarity=0.157  Sum_probs=82.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887432211210023-863334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+..+++.+|++++++|++||-||++.+.+.-.-+..+..+.-.-|++ .++++.|+..|.+++.|+..|...
T Consensus        23 ~~~~~~~L~~~~i~~~l~r~~l~~~~Id~Vi~G~v~~~g~g~n~aR~~~L~aGlp~~vp~~tVnr~C~SGl~Ai~~Aa~~  102 (392)
T PRK07491         23 ANTPAHELGAVAIKAALERAGVDAADVSEVILGQVLTAGQGQNPARQASIKAGLPQESPAWGINQLCGSGLRAVALGAQQ  102 (392)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             99999999999999999871979899898999945755655619999999769898886489806034577899999998


Q ss_pred             HHCCC-CEEEEEEECCCCCC
Q ss_conf             74388-50588620122444
Q gi|254780489|r  129 INSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       129 i~~g~-~~vLVv~~e~~S~~  147 (325)
                      |++|. .-+++.+.|.+|+.
T Consensus       103 I~~G~~dvvlagGvEsmS~~  122 (392)
T PRK07491        103 IANGDAKIVVAGGQESMSMA  122 (392)
T ss_pred             HCCCCCCEEEEECCCCCCCC
T ss_conf             65898646776324423556


No 65 
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=99.48  E-value=1.4e-12  Score=102.02  Aligned_cols=98  Identities=14%  Similarity=0.123  Sum_probs=83.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887432211210023-863334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+..+++++|++++++|++||-||++.+.+...-+..+..+.-..|++ .++++.|+..|.+++.++..|...
T Consensus        22 ~~~~~~~L~a~~i~~~l~r~~i~p~~Id~Vi~G~v~~~g~g~n~aR~~aL~aGlp~~vp~~tVnr~C~SGl~Ai~~Aa~~  101 (392)
T PRK05656         22 ANIPAVDLGAAVIRQLLEQTGLDPAQVDEVILGQVLTAGAGQNPARQAAIKAGLPHSVPAMTLNKVCGSGLKALHLAAQA  101 (392)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf             89988999999999999983999899898999904765666639999999779998886489852536778999999999


Q ss_pred             HHCCC-CEEEEEEECCCCCC
Q ss_conf             74388-50588620122444
Q gi|254780489|r  129 INSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       129 i~~g~-~~vLVv~~e~~S~~  147 (325)
                      |++|. .-+++.+.|.+|+.
T Consensus       102 I~~G~~dv~iagGvEsmS~~  121 (392)
T PRK05656        102 IRCGDAEVIIAGGQENMSLA  121 (392)
T ss_pred             HHCCCCCEEEEECCCCCCCC
T ss_conf             86699757898343336788


No 66 
>PRK06025 acetyl-CoA acetyltransferase; Provisional
Probab=99.48  E-value=2.6e-12  Score=100.34  Aligned_cols=97  Identities=13%  Similarity=0.127  Sum_probs=79.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECC-CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             988799999999999864301322234425884310023-6887432211210023-86333421012310125676578
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDH-LLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADS  127 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~-~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~  127 (325)
                      .+.++.+|+..+++.+|++++++|++||-||++.+.+.- .-+..+..+.-.-|++ .++++.|+..|.|++.|+..|.+
T Consensus        25 ~~~~~~~Lga~~i~~~l~r~gi~p~~ID~Vi~G~v~~~g~~g~n~aR~aaL~AGlp~~vpa~TVnr~C~SGl~Ai~~aa~  104 (417)
T PRK06025         25 AHLHPQHLAATVLKALAERNGLNTADVDDIIWSTSSQRGKQGGDLGRMAALDAGYDIKASGVTLDRFCGGGITSVNLAAA  104 (417)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf             99989999999999999870989799898999807776543465999999967999888607875746408999999999


Q ss_pred             HHHCCC-CEEEEEEECCCCC
Q ss_conf             874388-5058862012244
Q gi|254780489|r  128 YINSHQ-KPVLIIAANLLSR  146 (325)
Q Consensus       128 ~i~~g~-~~vLVv~~e~~S~  146 (325)
                      .|++|. +-++..+.|.+|+
T Consensus       105 ~I~~G~~dvviAGGvEsmS~  124 (417)
T PRK06025        105 QIMSGMEDLVIAGGTEMMSY  124 (417)
T ss_pred             HHHCCCCCEEEEEEEECCCC
T ss_conf             99769998678953423676


No 67 
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.48  E-value=4.6e-12  Score=98.71  Aligned_cols=277  Identities=18%  Similarity=0.253  Sum_probs=158.6

Q ss_pred             CEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEE-E-----------ECCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             209999997358861388899988099976831114750889-9-----------4898879999999999986430132
Q gi|254780489|r    5 SSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRY-W-----------AEKHETLTDIAIQAGDIALRNANIK   72 (325)
Q Consensus         5 ~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~-~-----------~~~~e~~~~la~~Aa~~aL~~a~~~   72 (325)
                      .+.|+|+|..-|--  .-+|.-+.      .+.-++||.... +           ........++...|+++||++++++
T Consensus         3 RVVITGiG~vSplG--~~~e~w~~------L~~G~sgI~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~a~~~Al~dAgl~   74 (379)
T PRK05952          3 KVVVTGIGLVSALG--SLEQSWQR------LLQGKSGIKLHQPFPELPPLPLGLIGSQPISLEDLTQTTVTAALKDAGLT   74 (379)
T ss_pred             EEEEECCEEECCCC--CHHHHHHH------HHCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             79994511068888--85999999------97689882567777777761420027785689999999999999977999


Q ss_pred             CC--CCCEEEEEEEEEC--------------------------CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             22--3442588431002--------------------------36887-4322112100238633342101231012567
Q gi|254780489|r   73 KD--SISLTLLATSTPD--------------------------HLLPP-SSPLITHRLGLMQSGAIDLTGACAGFLYALV  123 (325)
Q Consensus        73 ~~--dId~ii~~s~t~d--------------------------~~~P~-~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~  123 (325)
                      +.  ++..+ ++++...                          ..+|. .+..++..+|++. +++-++.+|++++.||.
T Consensus        75 ~~~~~~gv~-~Gt~~g~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~ia~~~g~~G-~~~~~~~aCaS~~~Ai~  152 (379)
T PRK05952         75 PPLTDCGVV-IGSSRGFQGQWEKLARQIYVGDQSGDEAEENWLDTLPHQAAIATARQIGAQG-PVLAPMAACATGIWAIA  152 (379)
T ss_pred             CCCCCEEEE-EEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-CEECCCCHHHHHHHHHH
T ss_conf             975465899-9967526768999998752047888667216999853399999999839999-62040127478999999


Q ss_pred             HHHHHHHCC-CCEEEEEEECC-CCCC---------------CCCCC-CCCCCCCCCCEEEEEECCCCCCCCC--CCEEEE
Q ss_conf             657887438-85058862012-2444---------------46222-4434325442001122057654445--311355
Q gi|254780489|r  124 MADSYINSH-QKPVLIIAANL-LSRR---------------INLED-KDTAIIFGDAAGAVVLAPSPLKDKS--GILGIE  183 (325)
Q Consensus       124 ~A~~~i~~g-~~~vLVv~~e~-~S~~---------------~d~~d-~~~~~lfGDgA~A~il~~~~~~~~~--~il~~~  183 (325)
                      .|.++|++| .+.++|.++|. .+..               ..|-| +...+++|+||+++||+..+...+.  .+... 
T Consensus       153 ~A~~~I~~G~~d~~i~gg~~~~~~~~~~~~f~~~~~ls~~~~rPFd~~r~G~v~gEGa~~lvLE~~~~A~~rga~iya~-  231 (379)
T PRK05952        153 QGAELIQTGQCQRVIAGAVESPITPLTLAGFQKMGALAKTGAYPFDRQREGLVLGEGGAILVLESEELAQKRGAKIYGQ-  231 (379)
T ss_pred             HHHHHHHCCCCCEEEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCEEEEECCHHHHHHCCCCEEEE-
T ss_conf             9999998399887986787652482768999865783446767454689960258750467645599998789956899-


Q ss_pred             EEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHH--
Q ss_conf             321367765278306986676544556552322451454343201003678988997401200122463056541389--
Q gi|254780489|r  184 LTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRII--  261 (325)
Q Consensus       184 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~--  261 (325)
                      +...+...|....                ..-..++.        .+.++++++|++++++++||||+-.|-.+-...  
T Consensus       232 i~g~~~~~d~~~~----------------~~~~~~g~--------~~~~am~~al~~agi~~~~Idyi~aHgtgT~~~D~  287 (379)
T PRK05952        232 ILGFGLTCDAYHM----------------SAPEPSGK--------SAILAIQQCLARSGLTPEDIDYIHAHGTATRLNDQ  287 (379)
T ss_pred             EECCEECCCCCCC----------------CCCCCCHH--------HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCH
T ss_conf             9352553689888----------------78898989--------99999999999849983335289946787877699


Q ss_pred             ---HHHHHHCCCCHHHHH-H-HHHHCCCCCCCHHHHHHH---HHHHHCCCCC---------------------CCEEEEE
Q ss_conf             ---999997197865700-2-185409330005999999---9998067899---------------------9899999
Q gi|254780489|r  262 ---QKVCEKIGLSKRIMV-N-SLKDFGNSSSASIPLSLS---LENQRKPFQK---------------------GEKILTI  312 (325)
Q Consensus       262 ---~~~~~~lgi~~~~~~-~-~l~~~GN~~sAsi~~~L~---~~~~~g~i~~---------------------Gd~vll~  312 (325)
                         +++.+.++   ++.+ . +=..+||+-+|+=.+.+.   .+++++.+.|                     -+.+|.-
T Consensus       288 ~E~~ai~~vfg---~~~~v~s~Ks~~GH~~~aaG~~e~~~~~l~l~~~~ippt~n~~~p~~~l~~v~~~~~~~~~~aL~n  364 (379)
T PRK05952        288 REANLIQTLFP---HRVAVSSTKGATGHTLGASGALGVAFSLLALRHQQLPPCVGLQEPEFDLNFVRQARQSPLKNVLCL  364 (379)
T ss_pred             HHHHHHHHHHC---CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             99999999718---778877874332453277799999999999953971898899999989987787633788899996


Q ss_pred             EECCCCC
Q ss_conf             8615510
Q gi|254780489|r  313 SCRRGND  319 (325)
Q Consensus       313 ~~G~G~s  319 (325)
                      +||-|-+
T Consensus       365 sfgfGG~  371 (379)
T PRK05952        365 SFGFGGQ  371 (379)
T ss_pred             EECCCCE
T ss_conf             2258736


No 68 
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated
Probab=99.47  E-value=2e-12  Score=101.06  Aligned_cols=269  Identities=19%  Similarity=0.161  Sum_probs=150.7

Q ss_pred             CEEEEEEEEECCCCCCCHHHHHHHH--CCC-HH---H-------------EEECCCCCEEEEECCC---------CCHHH
Q ss_conf             2099999973588613888999880--999-76---8-------------3111475088994898---------87999
Q gi|254780489|r    5 SSCILGFGHAVPNQCIHNSIIERHL--NLK-LG---V-------------IEQKTGIKYRYWAEKH---------ETLTD   56 (325)
Q Consensus         5 ~~~I~g~g~~lP~~~i~n~~l~~~~--~~~-~~---~-------------i~~~tGI~~R~~~~~~---------e~~~~   56 (325)
                      .+.|+|+|...|-- .+-+++-+.+  |.+ ..   +             .....|-+.+.+..++         .....
T Consensus         8 rVvITGiG~vtp~G-~~~~e~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   86 (415)
T PRK07103          8 EVVVTGVGVVSAIG-QGRQPFAAALLAGRHAFGVMRRPGRQLPDDPGAGPAPAFFGAEIDSLALPPMLDAHRRRASYSAQ   86 (415)
T ss_pred             EEEEECCEEECCCC-CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHH
T ss_conf             19998886378883-89999999997599865656656664668743334456556435666630028899875529999


Q ss_pred             HHHHHHHHHHHHCCCCC---CCCCEEEEEEEE---------------ECCCCCC---------CCCCCCCCCCCCCCCCC
Q ss_conf             99999999864301322---234425884310---------------0236887---------43221121002386333
Q gi|254780489|r   57 IAIQAGDIALRNANIKK---DSISLTLLATST---------------PDHLLPP---------SSPLITHRLGLMQSGAI  109 (325)
Q Consensus        57 la~~Aa~~aL~~a~~~~---~dId~ii~~s~t---------------~d~~~P~---------~a~~v~~~Lg~~~~~~~  109 (325)
                      ++..|+++|++++++++   ..+.+++.++..               +.+..|.         .+..|+..+|++. +++
T Consensus        87 ~a~~a~~~Al~dagl~~~~~~r~G~~vg~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~~gl~G-p~~  165 (415)
T PRK07103         87 AALAAVREAWDDAALGDVDPLRIGLVVGGSNVQQRELALVHDAYRERPAFLRPSYGLSFMDSDLCGLCTEQFGIRG-VAF  165 (415)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCC
T ss_conf             9999999999967999778775289999674658999999998556998137658887510589999999968999-720


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCC-CEEEEEEECC-CCCC-----------------------CCCCC-CCCCCCCCCCE
Q ss_conf             421012310125676578874388-5058862012-2444-----------------------46222-44343254420
Q gi|254780489|r  110 DLTGACAGFLYALVMADSYINSHQ-KPVLIIAANL-LSRR-----------------------INLED-KDTAIIFGDAA  163 (325)
Q Consensus       110 di~~~C~g~l~aL~~A~~~i~~g~-~~vLVv~~e~-~S~~-----------------------~d~~d-~~~~~lfGDgA  163 (325)
                      -++.+|++++.||..|.++|+.|. ..+++.+++. .|..                       ..|-| ....+++|+||
T Consensus       166 tv~tACaSg~~Ai~~A~~~Ir~G~~D~ai~gG~~~~ls~~~~~~f~~lgals~~~~~~~P~~~~rPFD~~rdG~v~GEGa  245 (415)
T PRK07103        166 TVGGASASGQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACRPFDQDRDGFIYGEAC  245 (415)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCE
T ss_conf             10153215999999999999839999888426322205688999998677631446789876666010589964352764


Q ss_pred             EEEEECCCCCCCCC--CCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             01122057654445--3113553213677652783069866765445565523224514543432010036789889974
Q gi|254780489|r  164 GAVVLAPSPLKDKS--GILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKS  241 (325)
Q Consensus       164 ~A~il~~~~~~~~~--~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~  241 (325)
                      +++||++.+.....  .|++.. ...+...|....                  ...+.        .-..++++++|+++
T Consensus       246 ~~lvLE~~e~A~~RGa~i~a~i-~G~g~~~Da~~~------------------~~p~~--------~g~~~am~~Al~~A  298 (415)
T PRK07103        246 GAIVVERAERARRRGVRPYAKL-LGWSIRLDATRG------------------PAPSL--------DGEMAVIRGALRRA  298 (415)
T ss_pred             EEEEEHHHHHHHHCCCEEEEEE-EEEEECCCCCCC------------------CCCCH--------HHHHHHHHHHHHHC
T ss_conf             7763311666876799588998-310451478788------------------89977--------99999999999982


Q ss_pred             CCCCCCCCEEEECCCCCHHH-----HHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHH---HHHHHHCCC
Q ss_conf             01200122463056541389-----999997197865700218540933000599999---999980678
Q gi|254780489|r  242 DLQPQDINRFIPHQANSRII-----QKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSL---SLENQRKPF  303 (325)
Q Consensus       242 gl~~~did~~i~Hq~~~~~~-----~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L---~~~~~~g~i  303 (325)
                      +++++||||+..|--+-+.-     +++.+.++=. -.+..+=..+||+-.|+=.+.+   -.+++.+.+
T Consensus       299 gl~~~~IdyI~aHgTgT~~~D~~E~~Al~~~fg~~-~~v~S~Ks~~GH~lgAaGa~e~i~~~lal~~~~i  367 (415)
T PRK07103        299 GLGPADIDYVNPHGTGSVLGDATELDALRASGLAH-ARINTTKSLVGHGLSAAGIVELIATLLQMRAGRL  367 (415)
T ss_pred             CCCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCC-CCEECCCHHHHHCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             97812307798148767676999999999970899-8675864432035799999999999999843950


No 69 
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.47  E-value=4.6e-12  Score=98.70  Aligned_cols=292  Identities=18%  Similarity=0.164  Sum_probs=164.3

Q ss_pred             CCCCCEEEEEEEEECCCCCCCHHHHHHHH--CCC-HHHEE--ECCCCCEEEEECC----------CCCHHHHHHHHHHHH
Q ss_conf             96662099999973588613888999880--999-76831--1147508899489----------887999999999998
Q gi|254780489|r    1 MIKSSSCILGFGHAVPNQCIHNSIIERHL--NLK-LGVIE--QKTGIKYRYWAEK----------HETLTDIAIQAGDIA   65 (325)
Q Consensus         1 M~~~~~~I~g~g~~lP~~~i~n~~l~~~~--~~~-~~~i~--~~tGI~~R~~~~~----------~e~~~~la~~Aa~~a   65 (325)
                      |-+..+.|+|+|.--|-- .+-+++-+.+  |.+ ...|.  ...+...+.....          ......++..|+++|
T Consensus         8 ~grprVvITG~G~vsp~G-~~~e~~w~~L~~G~Sgi~~i~~~~~~~~~~~~ag~vd~~~~~~~~~~~~~~~~~~~aa~~A   86 (425)
T PRK06501          8 LGRPIVAVTGMGVVTSLG-QGKADNWAALTAGESGIHTITRFPTEGLRTRIAGTVDFLPESPFGASALSEALARLAAEEA   86 (425)
T ss_pred             CCCCCEEEECCEEECCCC-CCHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEECCCCCHHHHCCCCHHHHHHHHHHHHH
T ss_conf             799999997555778882-8999999999749987773887886579875789788888566335479999999999999


Q ss_pred             HHHCCCCCCCCCEE-----------------EEEEEE----EC----------CCCC---------CCCCCCCCCCCCCC
Q ss_conf             64301322234425-----------------884310----02----------3688---------74322112100238
Q gi|254780489|r   66 LRNANIKKDSISLT-----------------LLATST----PD----------HLLP---------PSSPLITHRLGLMQ  105 (325)
Q Consensus        66 L~~a~~~~~dId~i-----------------i~~s~t----~d----------~~~P---------~~a~~v~~~Lg~~~  105 (325)
                      |+++++++.+++--                 +.....    ++          ...|         +.+..|..++|++.
T Consensus        87 l~dagl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~G  166 (425)
T PRK06501         87 LAQAGIGSGDFPGPLFLAVPPVELEWPARFELAAAVGANGPPSYDRLLRACRGGRFDALHERFLFGSIADRLADRFGTRG  166 (425)
T ss_pred             HHHCCCCCCCCCCCCEECCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             99749894556665100135543455651899999657857889999996289888843002237699999999868999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECC-C--------------CCC-------CCCCC-CCCCCCCCC
Q ss_conf             633342101231012567657887438-85058862012-2--------------444-------46222-443432544
Q gi|254780489|r  106 SGAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANL-L--------------SRR-------INLED-KDTAIIFGD  161 (325)
Q Consensus       106 ~~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~-~--------------S~~-------~d~~d-~~~~~lfGD  161 (325)
                       +++-++.+|++++.||..|.++|+.| .+.+++.++|. .              |..       ..|-| ....+++|+
T Consensus       167 -p~~tvstACASg~~AI~~A~~~Ir~G~~D~~iaGG~d~~~~~~~~~~f~~~~aLs~~~d~P~~a~RPFD~~RdG~v~GE  245 (425)
T PRK06501        167 -LPITLSTACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSLLSALSTQNDPPEKASKPFSKDRDGFVMAE  245 (425)
T ss_pred             -CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf             -8714222627899999999999975898889993320343628888988632332078997767677888998635357


Q ss_pred             CEEEEEECCCCCCCCC--CCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHH
Q ss_conf             2001122057654445--31135532136776527830698667654455655232245145434320100367898899
Q gi|254780489|r  162 AAGAVVLAPSPLKDKS--GILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLR  239 (325)
Q Consensus       162 gA~A~il~~~~~~~~~--~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~  239 (325)
                      ||+++||+..+.....  .|+.... -.+...|....                .....++        +.+.++++++|+
T Consensus       246 Gaa~lVLE~~~~A~~RGA~I~a~i~-g~g~~~d~~~~----------------~~~~p~~--------~~~~~~~~~al~  300 (425)
T PRK06501        246 GAGALVLESLESAVARGAKILGILA-GCGEKADSFHR----------------TRSSPDG--------SPAIGCVRAALA  300 (425)
T ss_pred             CEEEEEECCHHHHHHCCCEEEEEEE-CCEECCCCCCC----------------CCCCCCH--------HHHHHHHHHHHH
T ss_conf             0799983337779868996999984-62764789888----------------7799886--------999999999999


Q ss_pred             HHCCCCCCCCEEEECCCCCHHH-----HHHHHHCCCCHHHHH--HHHHHCCCCCCCHHHHHH---HHHHHHCCCC-----
Q ss_conf             7401200122463056541389-----999997197865700--218540933000599999---9999806789-----
Q gi|254780489|r  240 KSDLQPQDINRFIPHQANSRII-----QKVCEKIGLSKRIMV--NSLKDFGNSSSASIPLSL---SLENQRKPFQ-----  304 (325)
Q Consensus       240 ~~gl~~~did~~i~Hq~~~~~~-----~~~~~~lgi~~~~~~--~~l~~~GN~~sAsi~~~L---~~~~~~g~i~-----  304 (325)
                      +++++++||||+..|-.+-+..     +++.+.+|=...+.+  .+=..+||+..|+=.+.+   -.+++++.+.     
T Consensus       301 ~Ag~~~~~i~~i~aHgtgT~~~D~~E~~ai~~~fg~~~~~~~v~s~Ks~~GH~~gaaG~~e~~~~~lal~~~~ippt~n~  380 (425)
T PRK06501        301 DAGLTEDQIDYINAHGTSTPENDKMEYLGLSAVFGERLSSIPVSSNKSMIGHTLTAAGAVEAVFSLLTIQHGRIPPTINY  380 (425)
T ss_pred             HHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             82988245137980587686767999999999863568998688953433023799999999999999813954889998


Q ss_pred             -------------------CCCEEEEEEECCCCC
Q ss_conf             -------------------998999998615510
Q gi|254780489|r  305 -------------------KGEKILTISCRRGND  319 (325)
Q Consensus       305 -------------------~Gd~vll~~~G~G~s  319 (325)
                                         +-+++|.-+||-|-.
T Consensus       381 ~~~dp~~~l~~v~~~~~~~~~~~al~nsfGFGG~  414 (425)
T PRK06501        381 DNPDPAIPLDVVPNVARDARVTAVLSNSFGFGGQ  414 (425)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCE
T ss_conf             9999999855289976578878999976147724


No 70 
>PRK08041 consensus
Probab=99.47  E-value=2.1e-12  Score=100.98  Aligned_cols=98  Identities=14%  Similarity=0.142  Sum_probs=83.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             98879999999999986430132223442588431002368874322112100238-63334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQ-SGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~-~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+..+++.+|++++++|++||-||++.+.+...-+..+..+.-..|++. ++++.|+..|.+++.|+..|...
T Consensus        22 ~~~~~~~L~a~~ik~~l~r~gi~~~~ID~vi~G~v~~~g~g~n~aR~~al~aGlp~~vpa~tVnr~C~SGl~Ai~~Aa~~  101 (391)
T PRK08041         22 ARHSAVELGSLVVKALIERTGVPAYAVDEVILGQVLTAGAGQNPARQSAIKGGLPNSVSAITINDVCGSGLKALHLATQA  101 (391)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf             89999999999999999981989899898999805765656659999999769998887178751656878999999999


Q ss_pred             HHCCC-CEEEEEEECCCCCC
Q ss_conf             74388-50588620122444
Q gi|254780489|r  129 INSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       129 i~~g~-~~vLVv~~e~~S~~  147 (325)
                      |++|. +-+++.+.|.+|+.
T Consensus       102 I~~G~~dvvlagGvEsmS~~  121 (391)
T PRK08041        102 IQCGEADIVIAGGQENMSRA  121 (391)
T ss_pred             HHCCCCCEEEEEEEECCCCC
T ss_conf             86799766777412214658


No 71 
>PRK08371 consensus
Probab=99.47  E-value=1.7e-12  Score=101.52  Aligned_cols=199  Identities=20%  Similarity=0.272  Sum_probs=127.8

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             887999999999998643013222344258843100236--887432211210023863334210123101256765788
Q gi|254780489|r   51 HETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHL--LPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        51 ~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~--~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      +.+..+|+.+|+++||++++++  +||-+++++..+...  ....+..++..+|+++.++..++.+|++++.++..|...
T Consensus        19 ~~~~~~L~~ea~~~Al~dAgi~--~iD~v~~g~~~~~~~~~~~~~~~~~a~~~Gl~~vp~~~v~~~caSg~~Ai~~Aa~~   96 (388)
T PRK08371         19 RTSLRDLAVEAILKAMDDAGID--KVDSLYVGNMASGSFIEQENLGALIADWAGLGNIPAVKVEAACASGGAAVQEGAKA   96 (388)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCC--HHHEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             9898999999999999980998--33348991356542221323999999975999986246667357899999999999


Q ss_pred             HHCC-CCEEEEEEECCCCCCCCCC---------CCC--------------------------------------------
Q ss_conf             7438-8505886201224444622---------244--------------------------------------------
Q gi|254780489|r  129 INSH-QKPVLIIAANLLSRRINLE---------DKD--------------------------------------------  154 (325)
Q Consensus       129 i~~g-~~~vLVv~~e~~S~~~d~~---------d~~--------------------------------------------  154 (325)
                      |++| .+.+|+++.|.+|......         |..                                            
T Consensus        97 I~sG~~d~vla~G~e~ms~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~al~a~~~~~~yg~t~e~~a~vav~~~~~A~~  176 (388)
T PRK08371         97 VLSGLEDVVLVVGVEKMTDAWPSDATRYLAYAADAEWELFHGASFVALNALIMRLYMNTYGYTEEDLALFAVNAHANGAK  176 (388)
T ss_pred             HHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHH
T ss_conf             98288988999867534678887530001245444402104837777899999999999589988837999967076760


Q ss_pred             ----------------------------CCCCCCCCEEEEEECCCCCCCCCCCE---EEEEEECCCCCCEEEEECCCCCC
Q ss_conf             ----------------------------34325442001122057654445311---35532136776527830698667
Q gi|254780489|r  155 ----------------------------TAIIFGDAAGAVVLAPSPLKDKSGIL---GIELTSDGSKYDLIKIPTGGSTS  203 (325)
Q Consensus       155 ----------------------------~~~lfGDgA~A~il~~~~~~~~~~il---~~~~~s~~~~~~~~~~~~~~~~~  203 (325)
                                                  .+-...|||+|+||..++...+.++-   .......+...+           
T Consensus       177 np~A~~~~~~t~e~~~~s~~i~~pl~~~d~s~~~DGAaAvvl~s~e~A~~~g~~~~~~v~~~g~g~~~~-----------  245 (388)
T PRK08371        177 NPYAMFKRPITVETVMKSPYIADPLKLFDASPVCDGAAAVIITSPEKAKELGVPKDKWVEVAGMGRAID-----------  245 (388)
T ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCHHHHCCCCCCCCHHHHHHCCHHHHHHCCCCCCEEEEEEEEEECCC-----------
T ss_conf             975603688658896147754571666346877560687762389999865999652899999985356-----------


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHH
Q ss_conf             6544556552322451454343201003678988997401200122463056541389999997197865
Q gi|254780489|r  204 PAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKR  273 (325)
Q Consensus       204 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~  273 (325)
                      +.........         .  ........++++|+++|++++|||.+=+|-+-....-...+.||+.+.
T Consensus       246 ~~~~~~~~d~---------~--~~~~~~~A~~~al~~AGl~~~DIDv~Ei~daFa~~~l~~le~lGl~~~  304 (388)
T PRK08371        246 TINLANREDL---------L--TLKAAKIAAEKAYKMAGVEPKDIDFFEVHDAFTVMAALSLEALGVAEK  304 (388)
T ss_pred             CCCCCCCCCC---------C--CCCHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHHHHHHHHCCCCCC
T ss_conf             5555667633---------3--464599999999998499988894775314335889999998499978


No 72 
>PRK08242 acetyl-CoA acetyltransferase; Validated
Probab=99.47  E-value=3.9e-12  Score=99.18  Aligned_cols=98  Identities=15%  Similarity=0.095  Sum_probs=80.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECC-CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             988799999999999864301322234425884310023-6887432211210023-86333421012310125676578
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDH-LLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADS  127 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~-~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~  127 (325)
                      .+.++.+|+..+++.+|++++++|++||-||++.+.+-. .-...+..+.-.-|++ .++++.|+..|.+++.|+..|.+
T Consensus        24 ~~~~~~~L~a~~i~~~l~r~~i~~~~Id~vi~G~v~~~g~~g~n~aR~~al~aGlp~~vpa~TVnr~C~SGl~Ai~~Aa~  103 (402)
T PRK08242         24 HEVKPVRLAAGLLNALRDRNGLDTAAVDDVVLGCVTPVGDQGADIARTAVLAAGLPETVPGVQINRFCASGLEAVNLAAA  103 (402)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             98989999999999999870989899997999807765544577999999976999888647884505578999999999


Q ss_pred             HHHCCC-CEEEEEEECCCCCC
Q ss_conf             874388-50588620122444
Q gi|254780489|r  128 YINSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       128 ~i~~g~-~~vLVv~~e~~S~~  147 (325)
                      .|++|. ..++..+.|.+|+.
T Consensus       104 ~I~~G~~dv~iAGGvEsmS~~  124 (402)
T PRK08242        104 KVRSGWDDLVIAGGVESMSRV  124 (402)
T ss_pred             HHHCCCCCEEEECCCCCCCCC
T ss_conf             996699888997661345657


No 73 
>PRK07124 consensus
Probab=99.45  E-value=1.2e-12  Score=102.45  Aligned_cols=98  Identities=16%  Similarity=0.107  Sum_probs=85.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887432211210023-863334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+.++++++|++++++|++||.|+++++.+....+..+..+.-..|++ .++++.|+.+|++++.|+.+|...
T Consensus        22 ~~~~~~~L~~~ai~~al~~~~i~~~~Id~vi~G~v~~~g~g~n~ar~~al~aGlp~~iP~~tV~~aCaSG~~Ai~~A~~~  101 (402)
T PRK07124         22 KSVPAGELAGVAIKGALEQAKVSPEAIDEVIVGNVVSAGQGMGPGRQAAIFAGIPEEVPAYSLNMVCGSGMKTVMDAVSH  101 (402)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf             89999999999999999983989899998999934755556679999999769998885699725778999999999999


Q ss_pred             HHCC-CCEEEEEEECCCCCC
Q ss_conf             7438-850588620122444
Q gi|254780489|r  129 INSH-QKPVLIIAANLLSRR  147 (325)
Q Consensus       129 i~~g-~~~vLVv~~e~~S~~  147 (325)
                      |++| ..-+|+++.|.+|+.
T Consensus       102 I~sG~~dvvlagGvEsmS~~  121 (402)
T PRK07124        102 IKAGDAEVVVAAGVEVMSQI  121 (402)
T ss_pred             HHCCCCCEEEECCEECCCCC
T ss_conf             86799767896551015667


No 74 
>PRK07851 acetyl-CoA acetyltransferase; Provisional
Probab=99.44  E-value=3.7e-12  Score=99.34  Aligned_cols=98  Identities=17%  Similarity=0.118  Sum_probs=81.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHC-CCCCCCCCEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             98879999999999986430-1322234425884310023-688743221121002386333421012310125676578
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNA-NIKKDSISLTLLATSTPDH-LLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADS  127 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a-~~~~~dId~ii~~s~t~d~-~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~  127 (325)
                      .+.++.+|+..+++.+|++. +++|++||-||.+.+.+.. .-...+..+.-..|++.++++.|+..|.+++.|+..|.+
T Consensus        23 ~~~~~~~L~a~~i~~~l~r~~~l~p~~Id~Vi~G~~~~~g~~g~n~aR~aaL~aGl~~vpa~TVnr~C~SGl~Ai~~aa~  102 (405)
T PRK07851         23 VDMRPDDLAAQMVRAALDKVPALDPHDIDDLMLGCGLPGGESGFNIARVVAVLLGYDFLPGTTVNRYCSSSLQTTRMAFH  102 (405)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf             99999999999999999866797989989899983775464323099999997399998634575602057999999999


Q ss_pred             HHHCCC-CEEEEEEECCCCCC
Q ss_conf             874388-50588620122444
Q gi|254780489|r  128 YINSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       128 ~i~~g~-~~vLVv~~e~~S~~  147 (325)
                      .|++|. .-+++.+.|.+|+.
T Consensus       103 ~I~~G~~dvvlAGGvEsMS~~  123 (405)
T PRK07851        103 AIKAGEGDAFISAGVETVSRF  123 (405)
T ss_pred             HHHCCCCCEEEEECCCCCCCC
T ss_conf             997699998999681715567


No 75 
>PRK07855 lipid-transfer protein; Provisional
Probab=99.43  E-value=3.5e-11  Score=92.91  Aligned_cols=263  Identities=16%  Similarity=0.129  Sum_probs=149.1

Q ss_pred             CCCCCEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf             96662099999973588613888999880999768311147508899489887999999999998643013222344258
Q gi|254780489|r    1 MIKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTL   80 (325)
Q Consensus         1 M~~~~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii   80 (325)
                      ||+.++.|+|+|.. |-.                          |   .++.+..+|+.+|+++||++||++++|||-++
T Consensus         1 ~m~~~vAIvGvG~t-~f~--------------------------r---~~~~s~~~L~~eA~~~AL~DAGl~~~dIDg~~   50 (386)
T PRK07855          1 MLSGKAAIVGIGAT-EFS--------------------------K---NSGRSELRLACEAVLAALDDAGLAPSDVDGLV   50 (386)
T ss_pred             CCCCCEEEEEEEEE-CCE--------------------------E---CCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEE
T ss_conf             98998899975530-224--------------------------6---89989999999999999997599999969998


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCCC------------
Q ss_conf             84310023688743221121002386333-42101231012567657887438-85058862012244------------
Q gi|254780489|r   81 LATSTPDHLLPPSSPLITHRLGLMQSGAI-DLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLSR------------  146 (325)
Q Consensus        81 ~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~-di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S~------------  146 (325)
                      +.+...   .|  ...+.+.+|+.....+ .+..+|+++..++..|...|++| .+.+|++.++....            
T Consensus        51 ~~~~~~---~~--~~~ia~~lG~~~~~~~~~v~~~g~s~~~~~~~A~~aIasG~~d~vl~~~~~~~~~~~~~~~~~~~~~  125 (386)
T PRK07855         51 TFTMDT---NP--EIAVARAVGIGELKFFSQIGYGGGAACATVQQAAMAVATGVADVVVAYRAFNERSGMRFGQVQTGLA  125 (386)
T ss_pred             EEECCC---CC--HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf             960788---82--8999997199887532214788557999999999999738777899997414676322366755555


Q ss_pred             -------------------------------C-----------------------CCCC----CC-CC------------
Q ss_conf             -------------------------------4-----------------------4622----24-43------------
Q gi|254780489|r  147 -------------------------------R-----------------------INLE----DK-DT------------  155 (325)
Q Consensus       147 -------------------------------~-----------------------~d~~----d~-~~------------  155 (325)
                                                     +                       .||.    ++ .|            
T Consensus       126 ~~~~~~~~~~~~~~p~G~~~p~~~~Al~a~rym~~yG~t~E~lA~Vavknr~nA~~NP~A~~~~~~iT~edvl~S~~Ia~  205 (386)
T PRK07855        126 TNPTSEGVDYGWSYPHGLLTPAAWVAMIARRYMHEYGATSEDFGRVAVADRKHAATNPKAFFYGKPITLEDHQNSRWIAE  205 (386)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHCCCCCCC
T ss_conf             55332333311002346776688999999999999795999999999999998741959887378988999851667166


Q ss_pred             ------CCCCCCCEEEEEECCCCCCCCCC-----CEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             ------43254420011220576544453-----1135532136776527830698667654455655232245145434
Q gi|254780489|r  156 ------AIIFGDAAGAVVLAPSPLKDKSG-----ILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFY  224 (325)
Q Consensus       156 ------~~lfGDgA~A~il~~~~~~~~~~-----il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~  224 (325)
                            +-..+|||+|+||..++...+.+     |......+...+.            ......++         ++. 
T Consensus       206 PL~lldc~~~sDGAaAvVl~s~e~A~~~~~~pv~i~~~~~g~~~~~~------------~~~~~~~~---------d~~-  263 (386)
T PRK07855        206 PLRLLDCCQETDGAVAIVVTSAERARDLKQRPAVIEAAAQGSGADQY------------TMTSYYRD---------DLT-  263 (386)
T ss_pred             CCHHHHCCCCCCCEEEEEEECHHHHHHCCCCCEEEEEEEEEECCCCC------------CCCCCCCC---------CCC-
T ss_conf             54575538878843899994499997568997799999987136765------------54433456---------444-


Q ss_pred             HHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHH----------------HHHHH----HHHCCC
Q ss_conf             3201003678988997401200122463056541389999997197865----------------70021----854093
Q gi|254780489|r  225 NAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKR----------------IMVNS----LKDFGN  284 (325)
Q Consensus       225 ~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~----------------~~~~~----l~~~GN  284 (325)
                       ..+......+++++++|++++|||.+-+|-.-...--...|.||+-+.                +++.|    +---||
T Consensus       264 -~~~~~~~aa~~ay~~AGi~p~DiDv~e~~D~Ft~~el~~lE~lG~c~~Ge~~~~v~~G~~~~~G~~PvN~sGGlls~gh  342 (386)
T PRK07855        264 -GLPEMGLVARQLWRQSGLGPADIQTAILYDHFTPFVLMQLEELGFCGRGEAKDFIADGAIEIGGRLPINTHGGQLGEAY  342 (386)
T ss_pred             -CCCHHHHHHHHHHHHCCCCHHHCCEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHCCCC
T ss_conf             -5627999999999984999788726763067709999999984998898379999779955799714658970014676


Q ss_pred             CCCCHHHHHHHHHHHH------CCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf             3000599999999980------6789998999998615510201019
Q gi|254780489|r  285 SSSASIPLSLSLENQR------KPFQKGEKILTISCRRGNDRGIYCL  325 (325)
Q Consensus       285 ~~sAsi~~~L~~~~~~------g~i~~Gd~vll~~~G~G~s~ga~lL  325 (325)
                      ...++-   +.++.++      +++ +|-++.|+.-+.|.....++|
T Consensus       343 ~~G~~g---v~Eav~QLrG~A~~QV-~~a~~alv~~~gG~~~~~~~l  385 (386)
T PRK07855        343 IHGMNG---IAEAVRQLRGTSVNQV-PGVEHVLVTAGTGVPTSGLIL  385 (386)
T ss_pred             CCCHHH---HHHHHHHHHCCCCCCC-CCHHEEEEECCCCHHHHHHCC
T ss_conf             430778---9999999748641359-940458893898444433015


No 76 
>PRK09051 beta-ketothiolase; Provisional
Probab=99.43  E-value=4.3e-12  Score=98.93  Aligned_cols=98  Identities=20%  Similarity=0.160  Sum_probs=81.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCC-CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236-887432211210023-86333421012310125676578
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHL-LPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADS  127 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~-~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~  127 (325)
                      .+.++.+|+..+++.+|++++++|++||-||++.+.+... .+..+..+.-..|++ .++++.|+..|.+++.|+..|..
T Consensus        23 ~~~~~~~L~a~~i~~~l~r~~i~p~~Id~Vi~G~v~~~g~~~~niaR~aal~aGlp~~vp~~tVnr~C~SGl~Ai~~Aa~  102 (394)
T PRK09051         23 KDFAPTDLGAIVVREALARAGVDGDQVGHVVFGHVIPTEPRDMYLSRVAAINAGVPQETPALNVNRLCGSGLQAIVSAAQ  102 (394)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHH
T ss_conf             89988999999999999871989899897999923556766767899999976999888718871554778999999999


Q ss_pred             HHHCC-CCEEEEEEECCCCCC
Q ss_conf             87438-850588620122444
Q gi|254780489|r  128 YINSH-QKPVLIIAANLLSRR  147 (325)
Q Consensus       128 ~i~~g-~~~vLVv~~e~~S~~  147 (325)
                      .|++| .+.+++.+.|.+|+.
T Consensus       103 ~I~~G~~d~viAGGvEsmS~~  123 (394)
T PRK09051        103 AILLGDADVAIGGGAESMSRA  123 (394)
T ss_pred             HHHCCCCCEEEEECCHHCCCC
T ss_conf             997699887787241020358


No 77 
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=99.42  E-value=1.2e-11  Score=96.02  Aligned_cols=98  Identities=13%  Similarity=0.064  Sum_probs=83.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEC-CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             98879999999999986430132223442588431002-36887432211210023-86333421012310125676578
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPD-HLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADS  127 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d-~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~  127 (325)
                      .+.++.+|+..+++.+|++++++|++||.||++.+++. ...+..+..+.-..|++ .++++.|+..|.+++.|+..|.+
T Consensus        22 ~~~~~~~L~~~a~~~~l~r~~v~~~~Id~vi~G~v~~~g~~~~n~aR~~~l~aglp~~vpa~tvn~~C~SGl~Ai~~A~~  101 (390)
T PRK06504         22 AGWHPADLAAQVLDALVDRSGADPAQIEDVIMGCVSQAGEQAMNVARNAVLASKLPESVPGTSIDRQCGSSQQALHFAAQ  101 (390)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf             99989999999999999880989899898999917874533240999999977999767547773467858999999999


Q ss_pred             HHHCC-CCEEEEEEECCCCCC
Q ss_conf             87438-850588620122444
Q gi|254780489|r  128 YINSH-QKPVLIIAANLLSRR  147 (325)
Q Consensus       128 ~i~~g-~~~vLVv~~e~~S~~  147 (325)
                      .|++| ..-+|+.+.|.+|+.
T Consensus       102 ~I~sG~~dv~lagGvEsmS~~  122 (390)
T PRK06504        102 AVMSGTMDVVIAAGVESMTRV  122 (390)
T ss_pred             HHHCCCCCEEEECCEEECCCC
T ss_conf             984799677731562103689


No 78 
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=99.42  E-value=3.5e-12  Score=99.52  Aligned_cols=98  Identities=11%  Similarity=0.059  Sum_probs=78.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCC-CCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             98879999999999986430132223442588431002368-87432211210023-86333421012310125676578
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLL-PPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADS  127 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~-P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~  127 (325)
                      .+.++.+|+..+.+.+|++++++|++||-|+++.+.+.-.. +..+..+.-.-|++ .++++.|+..|.+++.|+..|.+
T Consensus        28 ~~~~~~~L~a~~~~~~l~r~gi~~~~Id~vi~G~~~~~g~~~~~~aR~~~l~aGlp~~vpa~tVn~~CaSG~~Ai~~A~~  107 (394)
T PRK06445         28 NDLRPEELAAVLINALIEKTGIKPEEIGDVITGCALQVGENWLYGGRHVVLLAKLPYTIPAMHVDRQCASSLTTVAIGAM  107 (394)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf             78999999999999999874989899697999647555656674889999976999888748885541689999999999


Q ss_pred             HHHCC-CCEEEEEEECCCCCC
Q ss_conf             87438-850588620122444
Q gi|254780489|r  128 YINSH-QKPVLIIAANLLSRR  147 (325)
Q Consensus       128 ~i~~g-~~~vLVv~~e~~S~~  147 (325)
                      .|++| ..-+|+++.|.+|+.
T Consensus       108 ~I~sG~~dvvlAgGvEsmS~~  128 (394)
T PRK06445        108 EIATGMADIVIAGGVEHMTHT  128 (394)
T ss_pred             HHHCCCCCEEEEECEECCCCC
T ss_conf             997399999999474236678


No 79 
>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=99.41  E-value=1.5e-12  Score=101.93  Aligned_cols=222  Identities=19%  Similarity=0.234  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCE----EEEEEEEECCC--------------C----CC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999986430132223442----58843100236--------------8----87-43221121002386333421
Q gi|254780489|r   56 DIAIQAGDIALRNANIKKDSISL----TLLATSTPDHL--------------L----PP-SSPLITHRLGLMQSGAIDLT  112 (325)
Q Consensus        56 ~la~~Aa~~aL~~a~~~~~dId~----ii~~s~t~d~~--------------~----P~-~a~~v~~~Lg~~~~~~~di~  112 (325)
                      -|+.+++++||++||+++++++-    |+.+++..||.              .    ++ .|.+|...+|++. +++-|+
T Consensus        89 rl~L~~a~~Al~dAG~~~~~l~~~r~GV~vG~~~~d~~~~~~~~~~~~~~~~~~~~~~s~~a~ris~~~~l~G-p~~~vd  167 (424)
T smart00825       89 RLLLEVAWEALEDAGIDPESLRGSRTGVFVGAMSSDYAELLARDPEDIEGYAATGTARSFIANRISYFFDLRG-PSVTVD  167 (424)
T ss_pred             HHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CEEEEC
T ss_conf             9999999999997399835658874389997516637777641755578520245317689999999858999-635141


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCE-EEEEEECCC-CC----------CCC------CCC-CCCCCCCCCCEEEEEECCCCC
Q ss_conf             01231012567657887438850-588620122-44----------446------222-443432544200112205765
Q gi|254780489|r  113 GACAGFLYALVMADSYINSHQKP-VLIIAANLL-SR----------RIN------LED-KDTAIIFGDAAGAVVLAPSPL  173 (325)
Q Consensus       113 ~~C~g~l~aL~~A~~~i~~g~~~-vLVv~~e~~-S~----------~~d------~~d-~~~~~lfGDgA~A~il~~~~~  173 (325)
                      .+|++++.||..|.+.|+.|... +||-+++.. +.          .+.      +-| ....+.+|+|++++||++-..
T Consensus       168 tACsSsl~Al~~A~~~i~~G~~D~alvGg~~~~~~p~~~~~~~~~~~lS~~g~~rpFD~~adG~v~gEGa~~lvLk~l~~  247 (424)
T smart00825      168 TACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGFSRAGMLSPDGRCKTFDADADGYVRGEGVGVVVLKRLSD  247 (424)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHH
T ss_conf             47289999999999999769963300142667348789999861578799998755778899841047657997465999


Q ss_pred             C--CCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf             4--44531135532136776527830698667654455655232245145434320100367898899740120012246
Q gi|254780489|r  174 K--DKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRF  251 (325)
Q Consensus       174 ~--~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~  251 (325)
                      .  ++..|.+....+ +..+|      +          +...+...++        ....++++++|++++++++||||+
T Consensus       248 A~~~g~~Iya~I~G~-~~~~d------G----------~~~~~~~P~~--------~~~~~~~~~Al~~a~i~p~~I~yi  302 (424)
T smart00825      248 ALRDGDPILAVIRGS-AVNQD------G----------RSNGLTAPSG--------PAQARLIRQALARAGVDPADVDYV  302 (424)
T ss_pred             HHHCCCCEEEEEECE-EEECC------C----------CCCCCCCCCH--------HHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf             987699179999343-78258------9----------8787789998--------999999999999829896646879


Q ss_pred             EECCCCCHH-----HHHHHHHCCCC--HHH-H-HH-HHHHCCCCCCCHHHHHHHH---HHHHCCC
Q ss_conf             305654138-----99999971978--657-0-02-1854093300059999999---9980678
Q gi|254780489|r  252 IPHQANSRI-----IQKVCEKIGLS--KRI-M-VN-SLKDFGNSSSASIPLSLSL---ENQRKPF  303 (325)
Q Consensus       252 i~Hq~~~~~-----~~~~~~~lgi~--~~~-~-~~-~l~~~GN~~sAsi~~~L~~---~~~~g~i  303 (325)
                      -.|-.+...     .+++.+.++-.  ..+ . +. +=..+||+.+|+-...+-.   +++.+.+
T Consensus       303 eaHgtgt~~gD~~E~~al~~~f~~~~~~~~~~~igS~K~~~GH~~~AaG~~~lik~~lal~~~~i  367 (424)
T smart00825      303 EAHGTGTPLGDPIEAEALAAVFGQGRPRDGPLLLGSVKSNIGHLEAAAGVAGLIKVVLALRHGTI  367 (424)
T ss_pred             EECCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             96036687779999999999962368877842520453442333777899999999999856970


No 80 
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.41  E-value=1.9e-11  Score=94.71  Aligned_cols=263  Identities=13%  Similarity=0.146  Sum_probs=141.8

Q ss_pred             CCCEEEEEEEEECCCCCCCHHHHHHHH-C-CC-----HHHEEECCCCCEEE---EEC-CC-----------CCHHHHHHH
Q ss_conf             662099999973588613888999880-9-99-----76831114750889---948-98-----------879999999
Q gi|254780489|r    3 KSSSCILGFGHAVPNQCIHNSIIERHL-N-LK-----LGVIEQKTGIKYRY---WAE-KH-----------ETLTDIAIQ   60 (325)
Q Consensus         3 ~~~~~I~g~g~~lP~~~i~n~~l~~~~-~-~~-----~~~i~~~tGI~~R~---~~~-~~-----------e~~~~la~~   60 (325)
                      .+++.|+|+|.-.|.-. +-+++-+.+ . .+     ..+-.+..+...|.   +.+ .+           .....++..
T Consensus        11 ~~dVaItG~g~~~p~g~-~~~efw~~L~~G~sgi~~~~~~~~~~~~~~~~~~g~~~~~fd~~~~~~~~~~~~~~~~~~~~   89 (418)
T PRK07910         11 FPNVVVTGIAMTTALAT-DAETTWKLLLDGQSGIRTLDDPFVEEFDLPVRIGGHLLEEFDHQLTRVELRRLSYLQRMSTV   89 (418)
T ss_pred             CCCEEEECCEEECCCCC-CHHHHHHHHHCCCCCEEECCCCCCHHCCCCCEEEEEECCCCCCCCCHHCHHHHHHHHHHHHH
T ss_conf             98999977787898959-99999999973898767478422001389612733656676655780268763599999999


Q ss_pred             HHHHHHHHCC---CCCCCCCEEEEEEEEE----------------CCCC--------C-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999864301---3222344258843100----------------2368--------8-743221121002386333421
Q gi|254780489|r   61 AGDIALRNAN---IKKDSISLTLLATSTP----------------DHLL--------P-PSSPLITHRLGLMQSGAIDLT  112 (325)
Q Consensus        61 Aa~~aL~~a~---~~~~dId~ii~~s~t~----------------d~~~--------P-~~a~~v~~~Lg~~~~~~~di~  112 (325)
                      ++++|++++|   ++++.+..++..+...                ....        | ..+..+...++++. +++-+.
T Consensus        90 ~~~~a~edaG~~~~~~~r~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~G-p~~t~~  168 (418)
T PRK07910         90 LGRRVWENAGSPEVDTNRLMVSIGTGLGSAEELVFSYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAKA-GVITPV  168 (418)
T ss_pred             HHHHHHHHCCCCCCCHHHCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCC
T ss_conf             9999999779998882250179887315558899999999854856558778999866379999999828978-855530


Q ss_pred             CCCCCCHHHHHHHHHHHHCCC-CEEEEEEECCC-CCC----------------------CCCCC-CCCCCCCCCCEEEEE
Q ss_conf             012310125676578874388-50588620122-444----------------------46222-443432544200112
Q gi|254780489|r  113 GACAGFLYALVMADSYINSHQ-KPVLIIAANLL-SRR----------------------INLED-KDTAIIFGDAAGAVV  167 (325)
Q Consensus       113 ~~C~g~l~aL~~A~~~i~~g~-~~vLVv~~e~~-S~~----------------------~d~~d-~~~~~lfGDgA~A~i  167 (325)
                      .+|++++.||..|.+.|+.|. +.+++-++|.. +..                      ..|-| ....+++|+||+++|
T Consensus       169 tACsSs~~Ai~~A~~~I~~G~~d~ai~GG~~~~l~~~~~~~f~~l~~~~s~~~~~p~~~~rPFD~~rdG~v~gEGag~lv  248 (418)
T PRK07910        169 SACASGSEAIAQAWRQIVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDKDRDGFVFGEGGALMV  248 (418)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCEEEEE
T ss_conf             53234889999999999809988899545221268177899999777744588998877686556789864048248888


Q ss_pred             ECCCCCCCC--CCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf             205765444--531135532136776527830698667654455655232245145434320100367898899740120
Q gi|254780489|r  168 LAPSPLKDK--SGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQP  245 (325)
Q Consensus       168 l~~~~~~~~--~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~  245 (325)
                      |++.+....  ..|... +...+..+|...+                .....++        ....++++++|+++|+++
T Consensus       249 Le~l~~A~~rGa~I~a~-i~G~g~~~Dg~~~----------------~~p~p~g--------~~~~~am~~Al~~agl~p  303 (418)
T PRK07910        249 IETEEHAKARGANILAR-IMGASITSDGYHM----------------VAPDPNG--------ERAGHAMTRAIQLAGLTP  303 (418)
T ss_pred             EECHHHHHHCCCEEEEE-EEEEEECCCCCCC----------------CCCCCCC--------HHHHHHHHHHHHHHCCCC
T ss_conf             50254566369857899-8513645888887----------------5789980--------789999999999828995


Q ss_pred             CCCCEEEECCCCCHH-----HHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             012246305654138-----99999971978657002185409330005999
Q gi|254780489|r  246 QDINRFIPHQANSRI-----IQKVCEKIGLSKRIMVNSLKDFGNSSSASIPL  292 (325)
Q Consensus       246 ~did~~i~Hq~~~~~-----~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~  292 (325)
                      +||||+-.|-.+-+.     .+++.+.++=..-.+..+=..+||+-+|+=.+
T Consensus       304 ~~IdyI~aHGTgT~~gD~~E~~Ai~~vfg~~~~~v~S~Ks~iGH~~~AaG~~  355 (418)
T PRK07910        304 TDIDHVNAHATGTSVGDVAEGRAINNALGGHRPAVYAPKSALGHSVGAVGAV  355 (418)
T ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEECCHHHHHCCHHHHHHH
T ss_conf             3407799567778766999999999986699984128124342038999999


No 81 
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=99.41  E-value=7.1e-12  Score=97.49  Aligned_cols=98  Identities=12%  Similarity=0.125  Sum_probs=80.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECC-CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             988799999999999864301322234425884310023-6887432211210023-86333421012310125676578
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDH-LLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADS  127 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~-~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~  127 (325)
                      .+.++.+|+..+++.+|++++++|++||-||++.+.+.- .-+..+..++-.-|++ .++++.|+..|.+++.|+.+|.+
T Consensus        23 ~~~~~~eL~a~~i~~~l~r~gi~~~~Id~Vi~G~v~~~g~~g~n~aR~aaL~aGlp~~vpa~tVnr~C~SGl~Ai~~Aa~  102 (392)
T PRK07108         23 NMTHGATLGGHVVAAAVERAKLDPARVEDVIMGCANPEGATGANIARQIALRAGLPVTVPGMTVNRFCSSGLQTIALAAQ  102 (392)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf             89999999999999999870989899998999946655655577999999966999888627775745553899999987


Q ss_pred             HHHCCC-CEEEEEEECCCCCC
Q ss_conf             874388-50588620122444
Q gi|254780489|r  128 YINSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       128 ~i~~g~-~~vLVv~~e~~S~~  147 (325)
                      .|++|. .-++..+.|.+|..
T Consensus       103 ~I~~G~~dv~iAGGvEsmS~~  123 (392)
T PRK07108        103 RIIAGEGDVFVAGGVESISCV  123 (392)
T ss_pred             HHHCCCCCEEEEECEECCCCC
T ss_conf             863899986788045114557


No 82 
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=99.41  E-value=1.1e-11  Score=96.17  Aligned_cols=98  Identities=15%  Similarity=0.183  Sum_probs=84.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887432211210023-863334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+..+++.+|++++++|++||-||++.+.+....|..+.++.-.-|++ .++++.|+..|.+++.|+..|...
T Consensus        22 ~~~~~~~L~a~~ik~~l~r~~i~~~~Id~Vi~G~~~~~g~~~~~aR~aaL~aGlp~~vpa~tVnr~C~SGl~Ai~~Aa~~  101 (404)
T PRK06205         22 KPVPAEELAATVLRALVERTGIDPARVDDVIFGQCYPNGEAPAIGRVAALDAGLPVTVPGMQLDRRCGSGLQAVITAAMQ  101 (404)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             99988999999999999981989899897999942656767779999999779898875588815053327899999999


Q ss_pred             HHCCC-CEEEEEEECCCCCC
Q ss_conf             74388-50588620122444
Q gi|254780489|r  129 INSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       129 i~~g~-~~vLVv~~e~~S~~  147 (325)
                      |++|. +-+++.+.|.+|+.
T Consensus       102 I~sG~~dvviaGGvEsmS~~  121 (404)
T PRK06205        102 VQTGAADVVIAGGAESMSNV  121 (404)
T ss_pred             HHCCCCCEEEECCCCCCCCC
T ss_conf             96499777874142124668


No 83 
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=99.41  E-value=3.8e-12  Score=99.29  Aligned_cols=98  Identities=16%  Similarity=0.080  Sum_probs=80.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCC-CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236-887432211210023-86333421012310125676578
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHL-LPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADS  127 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~-~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~  127 (325)
                      .+.++.+|+..+++.+|++++++|++||-|+++.+.+... .+..+..+.-.-|++ .++++.|+..|.+++.|+..|.+
T Consensus        22 ~~~~~~~L~a~~i~~~l~r~~i~~~~Id~vi~G~v~~~g~~~~n~aR~~al~aGlp~~vp~~tVnr~CaSGl~Ai~~Aa~  101 (401)
T PRK08131         22 ASVRPDDLAATVIRRLVEKSGFAGDDIEDVILGCTNQAGEDSRNVARNALLLAGLPVTVPGQTVNRLCASGLSAVIDAAR  101 (401)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf             99988999999999999972989899898999814665654466999999966999888716875253578999999999


Q ss_pred             HHHCCC-CEEEEEEECCCCCC
Q ss_conf             874388-50588620122444
Q gi|254780489|r  128 YINSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       128 ~i~~g~-~~vLVv~~e~~S~~  147 (325)
                      .|++|. .-+++.+.|.+|+.
T Consensus       102 ~I~~G~~dvvlagGvEsMS~~  122 (401)
T PRK08131        102 AITCGEGDLYLAGGVESMSRA  122 (401)
T ss_pred             HHHCCCCCEEEEEEEECCCCC
T ss_conf             985799772588506503546


No 84 
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=99.40  E-value=1.7e-11  Score=94.97  Aligned_cols=240  Identities=20%  Similarity=0.182  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCCC------CCCEEEEEEEEEC-----------------CCC------C-CCCCCCCCCCCC
Q ss_conf             999999999998643013222------3442588431002-----------------368------8-743221121002
Q gi|254780489|r   54 LTDIAIQAGDIALRNANIKKD------SISLTLLATSTPD-----------------HLL------P-PSSPLITHRLGL  103 (325)
Q Consensus        54 ~~~la~~Aa~~aL~~a~~~~~------dId~ii~~s~t~d-----------------~~~------P-~~a~~v~~~Lg~  103 (325)
                      ..-|+..|+++||++||+++.      .+. +++++...+                 +..      | ..+..+...++.
T Consensus        72 ~~~~~l~aa~~Al~dAGl~~~~~~~~~r~g-v~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~  150 (407)
T cd00828          72 TTLLALVATEEALADAGITDPYEVHPSEVG-VVVGSGMGGLRFLRRGGKLDARAVNPYVSPKWMLSPNTVAGWVNILLLS  150 (407)
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHCCCCCEE-EEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHCC
T ss_conf             999999999999996799964552787669-9999677438889988776554058732502301422488999998587


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-CEEEEEEECCCCCC---------------------CCCCC-CCCCCCCC
Q ss_conf             386333421012310125676578874388-50588620122444---------------------46222-44343254
Q gi|254780489|r  104 MQSGAIDLTGACAGFLYALVMADSYINSHQ-KPVLIIAANLLSRR---------------------INLED-KDTAIIFG  160 (325)
Q Consensus       104 ~~~~~~di~~~C~g~l~aL~~A~~~i~~g~-~~vLVv~~e~~S~~---------------------~d~~d-~~~~~lfG  160 (325)
                      .+-+++-++.+|++++.||..|.++|+.|. +.++|.++|.++..                     ..|-| +...++.|
T Consensus       151 ~~Gp~~tv~tACaSsl~Ai~~A~~~I~~G~~d~aivGg~~~~~~~~~~~f~~~~~ls~~~~~p~~~~rPFD~~rdG~v~g  230 (407)
T cd00828         151 SHGPIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPLEEGLSGFANMGALSTAEEEPEEMSRPFDETRDGFVEA  230 (407)
T ss_pred             CCCCCCCEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEC
T ss_conf             88985265035079999999996662368514466431223563667999874454227899887513036678986834


Q ss_pred             CCEEEEEECCCCCCCCC--CCEEEE----EEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Q ss_conf             42001122057654445--311355----321367765278306986676544556552322451454343201003678
Q gi|254780489|r  161 DAAGAVVLAPSPLKDKS--GILGIE----LTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSA  234 (325)
Q Consensus       161 DgA~A~il~~~~~~~~~--~il~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i  234 (325)
                      +||+++||++.+...+.  .|....    ..+|+..                    ..  ....+        +.+.+++
T Consensus       231 EGa~~lvLe~~~~A~~rg~~i~a~i~g~~~~~dg~~--------------------~~--~~~~~--------~~~~~~~  280 (407)
T cd00828         231 EGAGVLVLERAELALARGAPIYGRVAGTASTTDGAG--------------------RS--VPAGG--------KGIARAI  280 (407)
T ss_pred             CCCEEEEEEEHHHHHHCCCEEEEEECCEEEECCCCC--------------------CC--CCCCC--------HHHHHHH
T ss_conf             852177650486676688979996436478668988--------------------87--79862--------6789999


Q ss_pred             HHHHHHHCCCCCCCCEEEECCCCCHH-----HHHHHHHCCCCHHHHH--HHHHHCCCCCCCHHHHHHHHH---HHHCCCC
Q ss_conf             98899740120012246305654138-----9999997197865700--218540933000599999999---9806789
Q gi|254780489|r  235 KQSLRKSDLQPQDINRFIPHQANSRI-----IQKVCEKIGLSKRIMV--NSLKDFGNSSSASIPLSLSLE---NQRKPFQ  304 (325)
Q Consensus       235 ~~~l~~~gl~~~did~~i~Hq~~~~~-----~~~~~~~lgi~~~~~~--~~l~~~GN~~sAsi~~~L~~~---~~~g~i~  304 (325)
                      +++|++++++++||+|+-.|-.+-+.     .+++.+.++-..++.+  .+=..+||+-+|+-.+.+-..   ++.+.+.
T Consensus       281 ~~Al~~A~i~~~~i~yI~aHgtgT~~gD~~E~~Al~~~f~~~~~~~~i~S~K~~~GH~~~aaG~~~li~~~l~l~~~~ip  360 (407)
T cd00828         281 RTALAKAGLSLDDLDVISAHGTSTPANDVAESRAIAEVAGALGAPLPVTAQKALFGHSKGAAGALQLIGALQSLEHGLIP  360 (407)
T ss_pred             HHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999719995456389951676866699999999998621378870445012303167899999999999998439719


Q ss_pred             C--------------------------CCEEEEEEECCCCCCCCCC
Q ss_conf             9--------------------------9899999861551020101
Q gi|254780489|r  305 K--------------------------GEKILTISCRRGNDRGIYC  324 (325)
Q Consensus       305 ~--------------------------Gd~vll~~~G~G~s~ga~l  324 (325)
                      |                          -++++.-+||-|-+-..++
T Consensus       361 pt~n~~~~~p~~~~~~~~~~~~~~~~~~~~a~~nsfGfGG~Na~lv  406 (407)
T cd00828         361 PTANLDDVDPDVEHLSVVGLSRDLNLKVRAALVNAFGFGGSNAALV  406 (407)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEE
T ss_conf             9999899997656133777687688999799997835680507896


No 85 
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=99.40  E-value=5.7e-12  Score=98.12  Aligned_cols=98  Identities=12%  Similarity=0.070  Sum_probs=79.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECC-CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             988799999999999864301322234425884310023-6887432211210023-86333421012310125676578
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDH-LLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADS  127 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~-~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~  127 (325)
                      .+.++.+|+..+++.+|++++++|++||-||.+.+.+.- .-+..+...+-.-|++ .++++.|+..|.+++.|+..|..
T Consensus        22 ~~~~~~~L~a~~ik~~l~r~~l~~~~id~Vi~G~v~~~g~~g~n~aR~aaL~aGlp~~vpa~tVnr~C~Sgl~Ai~~aa~  101 (387)
T PRK07850         22 SGLHAAELLGAVQRAVVERAGIDPGDVEQVIGGCVTQAGEQSNNITRVAWLTAGLPEHVGATTVDCQCGSAQQANHLVAG  101 (387)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             99988999999999999872989899798999878676554568999999977999767606563511178999999999


Q ss_pred             HHHCCC-CEEEEEEECCCCCC
Q ss_conf             874388-50588620122444
Q gi|254780489|r  128 YINSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       128 ~i~~g~-~~vLVv~~e~~S~~  147 (325)
                      .|++|. +-+++.+.|.+|+.
T Consensus       102 ~I~~G~~dv~iaGG~EsmS~~  122 (387)
T PRK07850        102 LIAAGAIDVGIACGIEAMSRV  122 (387)
T ss_pred             HHHCCCCCEEEEECCCCCCCC
T ss_conf             987799889998250303678


No 86 
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=99.40  E-value=7.2e-12  Score=97.44  Aligned_cols=98  Identities=16%  Similarity=0.176  Sum_probs=78.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHC-CCCCCCCCEEEEEEEEECC-CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             98879999999999986430-1322234425884310023-6887432211210023-8633342101231012567657
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNA-NIKKDSISLTLLATSTPDH-LLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMAD  126 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a-~~~~~dId~ii~~s~t~d~-~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~  126 (325)
                      .+.++.+|+..+++.+|+++ +++|++||-||++.+.+.- .-...+...+-.-|++ .++++.|+..|.+++.|+..|.
T Consensus        27 ~~~~~~~L~a~~i~~~l~r~~~l~~~~Id~vi~G~~~~~~~~g~n~aR~aal~aGlp~~vp~~tVnr~C~SGl~Ai~~Aa  106 (399)
T PRK09052         27 KNTRPDDLLAHVLRAAVAQVPGLDPKLIEDAIVGCAMPEAEQGLNVARIGALLAGLPNSVGGVTVNRFCASGLQAVAMAA  106 (399)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHH
T ss_conf             88998999999999999865797989989799970644565566899999997599988871578651336899999999


Q ss_pred             HHHHCCC-CEEEEEEECCCCCC
Q ss_conf             8874388-50588620122444
Q gi|254780489|r  127 SYINSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       127 ~~i~~g~-~~vLVv~~e~~S~~  147 (325)
                      +.|++|. +-++..+.|.+|+.
T Consensus       107 ~~I~~G~~dvviaGG~EsMS~~  128 (399)
T PRK09052        107 DRIRVGEADVMIAAGVESMSMV  128 (399)
T ss_pred             HHHHCCCCCEEEECCCCCCCCC
T ss_conf             9986899888986152024668


No 87 
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed
Probab=99.38  E-value=1.7e-11  Score=95.09  Aligned_cols=97  Identities=15%  Similarity=0.080  Sum_probs=83.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887432211210023-863334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+..+.+.+|++++++|++||-||++.+.+...-+..|..++-.-|++ .++++.|+..|.+++.|+..|...
T Consensus        33 ~~~~~~~L~a~~ik~~l~r~~i~p~~Id~Vi~G~v~~~~~g~n~AR~aaL~aGlp~~vp~~TVnr~C~SGl~Ai~~Aa~~  112 (436)
T PRK08963         33 HGVPAVDLGKMVVGELLARSEIDPKLIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAES  112 (436)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf             88998999999999999982989899998999836756767729999999759998886267763223568999999999


Q ss_pred             HHCCC-CEEEEEEECCCCC
Q ss_conf             74388-5058862012244
Q gi|254780489|r  129 INSHQ-KPVLIIAANLLSR  146 (325)
Q Consensus       129 i~~g~-~~vLVv~~e~~S~  146 (325)
                      |++|. +-++..+.|.+|+
T Consensus       113 I~~G~~dvvlaGGvEsMS~  131 (436)
T PRK08963        113 IMAGTIDIGIAGGADSSSV  131 (436)
T ss_pred             HHCCCCCEEEEECCCCCCC
T ss_conf             9749997899945122466


No 88 
>PRK08142 acetyl-CoA acetyltransferase; Provisional
Probab=99.38  E-value=2.6e-11  Score=93.83  Aligned_cols=223  Identities=14%  Similarity=0.109  Sum_probs=135.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             98879999999999986430132223442588431002368874322112100238633342101231012567657887
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYI  129 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i  129 (325)
                      ++.+..+|+.+|+++||++||++++|||-+++++..+..    ....+.+.||++..+...+..+|+++..++..|...+
T Consensus        21 ~~~t~~~La~eA~~~AL~DAGl~~~DIDg~~~~~~~~~~----~~~~~~~~lGi~~~~~~~~~~gGas~~~~~~~A~~aI   96 (388)
T PRK08142         21 PDKSVAQLHAEVAKGALADAGLTLADVDGYFCAGDAPGL----GPASMVDYLGLKVRHVDSTETGGSSYLAHVGHAAQAI   96 (388)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCCCC----CHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             998999999999999999759998999999876788874----1899999709985764475463579999999999999


Q ss_pred             HCC-CCEEEEEEECCCC--------------CC-----------------------------------------------
Q ss_conf             438-8505886201224--------------44-----------------------------------------------
Q gi|254780489|r  130 NSH-QKPVLIIAANLLS--------------RR-----------------------------------------------  147 (325)
Q Consensus       130 ~~g-~~~vLVv~~e~~S--------------~~-----------------------------------------------  147 (325)
                      ++| .+.+||+.++...              ..                                               
T Consensus        97 asG~~d~vlv~~a~~~~~~~~~~~~~~~~~~~~~~~~~e~p~G~~~~~~~Al~a~rym~~yG~t~e~lA~vav~~r~~A~  176 (388)
T PRK08142         97 AAGKCSVALITLAGRPRSEGSSGTEPRNWGADAPDAPFEAPYGPTTHNLYGMCAMRHMHEYGTTSEQLAWIKVAASHHAQ  176 (388)
T ss_pred             HHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf             84887789999812335667775443344566764201123577469999999999999979699999999999999860


Q ss_pred             CCCC----CCC------------------CCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCC
Q ss_conf             4622----244------------------343254420011220576544453113553213677652783069866765
Q gi|254780489|r  148 INLE----DKD------------------TAIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPA  205 (325)
Q Consensus       148 ~d~~----d~~------------------~~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~  205 (325)
                      .||.    ++.                  ..-..+|||+|+||..++...+.+--...+...+...          ..+.
T Consensus       177 ~NP~A~~r~~~t~edvl~s~~Ia~Pl~l~dc~~~sDGaaAvvl~s~e~a~~l~~~~v~i~g~g~~~----------~~~~  246 (388)
T PRK08142        177 HNPHAMLRDVVTVEDVLNSPMIADPLHRLDCCVVTDGGGALIVARPEIARSLKRPLVKVLGAGEAI----------KGQM  246 (388)
T ss_pred             CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHCCCCCEEEEEEEEEC----------CCCC
T ss_conf             494101589989788347752352222474077668618999935999976689958999999724----------7876


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHH------------
Q ss_conf             44556552322451454343201003678988997401200122463056541389999997197865------------
Q gi|254780489|r  206 GTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKR------------  273 (325)
Q Consensus       206 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~------------  273 (325)
                      ... .+.             .........+++++++|++++|||.+-+|-.-....-...+.||+-+.            
T Consensus       247 ~~~-~d~-------------~~~~~~~aa~~a~~~AGi~p~DiDv~e~yD~fs~~~~~~lE~lGfc~~Ge~~~~v~~G~~  312 (388)
T PRK08142        247 GGK-VDL-------------TYSGAAWSGPAAFAEAGVTPADIKYASIYDSFTITVLMQLEDLGFCKKGEGGKFVADGNL  312 (388)
T ss_pred             CCC-CCC-------------CHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCC
T ss_conf             656-544-------------125899999999998599988874786327750889999998299788836999877990


Q ss_pred             -----HHHHH----HHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             -----70021----8540933000599999999980
Q gi|254780489|r  274 -----IMVNS----LKDFGNSSSASIPLSLSLENQR  300 (325)
Q Consensus       274 -----~~~~~----l~~~GN~~sAsi~~~L~~~~~~  300 (325)
                           +++.|    +--.||.+.++-...+.++.++
T Consensus       313 ~~~~G~lPvNtsGGlls~ghp~~atG~~~~~Eav~Q  348 (388)
T PRK08142        313 ISGVGKLPFNTDGGGLCNNHPANRGGMTKVIEAVRQ  348 (388)
T ss_pred             CCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             228998025089643218986623799999999999


No 89 
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=99.38  E-value=1.1e-11  Score=96.19  Aligned_cols=269  Identities=16%  Similarity=0.165  Sum_probs=146.3

Q ss_pred             CCEEEEEEEEECCCCCCCHHHHHHHH-CCCHH--HEEE---------C----CCCCEEEEEC-----CCCCHHHHHHHHH
Q ss_conf             62099999973588613888999880-99976--8311---------1----4750889948-----9887999999999
Q gi|254780489|r    4 SSSCILGFGHAVPNQCIHNSIIERHL-NLKLG--VIEQ---------K----TGIKYRYWAE-----KHETLTDIAIQAG   62 (325)
Q Consensus         4 ~~~~I~g~g~~lP~~~i~n~~l~~~~-~~~~~--~i~~---------~----tGI~~R~~~~-----~~e~~~~la~~Aa   62 (325)
                      +.+.|+|+|.-.|.-. +-+++-+.+ .-...  .+.+         .    .+...+....     .-+....|+..|+
T Consensus         1 rRVvItG~g~~~P~g~-~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~~~~~~~d~~~~~~l~aa   79 (399)
T cd00832           1 RRAVVTGIGVVAPNGL-GVEEYWKAVLDGRSGLGPITRFDPSGYPARLAGEVPDFDAAEHLPGRLLPQTDRMTRLALAAA   79 (399)
T ss_pred             CCEEEECCEEECCCCC-CHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEECCCCCHHHCCCHHHHHHCCHHHHHHHHHH
T ss_conf             9299971677897959-999999999729983542775575568776456779878011689889874699999999999


Q ss_pred             HHHHHHCCCCCCCCCE----EEEEEEEECC-----------------CCCC---------CCCCCCCCCCCCCCCCCCCC
Q ss_conf             9986430132223442----5884310023-----------------6887---------43221121002386333421
Q gi|254780489|r   63 DIALRNANIKKDSISL----TLLATSTPDH-----------------LLPP---------SSPLITHRLGLMQSGAIDLT  112 (325)
Q Consensus        63 ~~aL~~a~~~~~dId~----ii~~s~t~d~-----------------~~P~---------~a~~v~~~Lg~~~~~~~di~  112 (325)
                      ++||+++|+++++++-    |+.++....+                 ..|.         .+.+|...+|++. +++-+.
T Consensus        80 ~~Al~dAGl~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~gl~G-p~~tv~  158 (399)
T cd00832          80 DWALADAGVDPAALPPYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGMRG-PSGVVV  158 (399)
T ss_pred             HHHHHHCCCCHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHH
T ss_conf             9988860998456487742899942567602558999999741854256112135667788889999828988-741021


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEEECCC---------------CCCCC------CCC-CCCCCCCCCCEEEEEECC
Q ss_conf             01231012567657887438850588620122---------------44446------222-443432544200112205
Q gi|254780489|r  113 GACAGFLYALVMADSYINSHQKPVLIIAANLL---------------SRRIN------LED-KDTAIIFGDAAGAVVLAP  170 (325)
Q Consensus       113 ~~C~g~l~aL~~A~~~i~~g~~~vLVv~~e~~---------------S~~~d------~~d-~~~~~lfGDgA~A~il~~  170 (325)
                      .+|++++.|+..|..+|+.|...+++.++|..               |..-+      |-| ....+++|+||+++||++
T Consensus       159 tacsssl~Ai~~A~~~i~~G~d~~i~Gg~~~~l~p~~~~~~~~~g~ls~~~~p~~~~rPFD~~r~G~v~GEGa~~lvLe~  238 (399)
T cd00832         159 AEQAGGLDALAQARRLVRRGTPLVVSGGVDSALCPWGWVAQLSSGRLSTSDDPARAYLPFDAAAAGYVPGEGGAILVLED  238 (399)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCEEEEEECC
T ss_conf             14707999999999998769720121774045162889999875664569999865047767898066427667888454


Q ss_pred             CCCCCC--CCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             765444--531135532136776527830698667654455655232245145434320100367898899740120012
Q gi|254780489|r  171 SPLKDK--SGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDI  248 (325)
Q Consensus       171 ~~~~~~--~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~di  248 (325)
                      .+....  ..|.+.... .+...+.      ...             ..++        ..+.++++++|+++|++++||
T Consensus       239 ~~~A~~rGa~i~a~i~G-~~~~~d~------~~~-------------~~~~--------~~~~~a~~~Al~~agi~p~~I  290 (399)
T cd00832         239 AAAARERGARVYGEIAG-YAATFDP------PPG-------------SGRP--------PGLARAIRLALADAGLTPEDV  290 (399)
T ss_pred             HHHHHHCCCEEEEEEEE-EEECCCC------CCC-------------CCCH--------HHHHHHHHHHHHHHCCCCCEE
T ss_conf             98898788959999988-8984899------899-------------9897--------999999999999719996705


Q ss_pred             CEEEECCCCCHH-----HHHHHHHCCCCHHHHH--HHHHHCCCCCCCHHHHHHHH---HHHHCCCC
Q ss_conf             246305654138-----9999997197865700--21854093300059999999---99806789
Q gi|254780489|r  249 NRFIPHQANSRI-----IQKVCEKIGLSKRIMV--NSLKDFGNSSSASIPLSLSL---ENQRKPFQ  304 (325)
Q Consensus       249 d~~i~Hq~~~~~-----~~~~~~~lgi~~~~~~--~~l~~~GN~~sAsi~~~L~~---~~~~g~i~  304 (325)
                      ||+-.|--+-..     .+++.+.++  +++.+  .+=..+||+-+|+=.+.+-.   +++++.+.
T Consensus       291 ~yI~aHgTGT~~gD~~E~~Ai~~~fg--~~~~pv~S~K~~iGH~~~AaG~~~~i~~ll~l~~g~ip  354 (399)
T cd00832         291 DVVFADAAGVPELDRAEAAALAAVFG--PRGVPVTAPKTMTGRLYAGGAPLDVATALLALRDGVIP  354 (399)
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             69998337585569999999999966--99987899542211069999999999999998359619


No 90 
>PRK08234 consensus
Probab=99.38  E-value=1.1e-11  Score=96.15  Aligned_cols=98  Identities=12%  Similarity=0.127  Sum_probs=81.9

Q ss_pred             CCCCHHHHHHHHHHHHHHH-CCCCCCCCCEEEEEEEEECC-CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             9887999999999998643-01322234425884310023-6887432211210023-8633342101231012567657
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRN-ANIKKDSISLTLLATSTPDH-LLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMAD  126 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~-a~~~~~dId~ii~~s~t~d~-~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~  126 (325)
                      .+.++.+|+..+++.+|++ ++++|++||-||++.+.+.. ..+..+..++-.-|++ .++++.|+..|.++++|+..|.
T Consensus        22 ~~~~~~~L~a~~i~~~l~r~~~~~~~~Id~vi~G~v~~~g~~~~n~aR~aaL~aGlp~~vpa~tVnr~C~SGl~Ai~~Aa  101 (400)
T PRK08234         22 RDVRPDDLAAVVIRALIERNPNVPVEQIDDVVFGNANQAGEDNRNVARMAALLAGLPVEVAGVTVNRLCGSGLDAVAYAA  101 (400)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf             88988999999999999746896989989899990676564446699999997699988861677153035999999999


Q ss_pred             HHHHCCC-CEEEEEEECCCCCC
Q ss_conf             8874388-50588620122444
Q gi|254780489|r  127 SYINSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       127 ~~i~~g~-~~vLVv~~e~~S~~  147 (325)
                      ..|++|. .-+++.+.|.+|+.
T Consensus       102 ~~I~~G~~dvviagGvEsmS~~  123 (400)
T PRK08234        102 RAIWAGEGEIMIAGGTESMTRA  123 (400)
T ss_pred             HHHHCCCCCEEEECCCCCCCCC
T ss_conf             9985899757885152443436


No 91 
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=99.37  E-value=6.1e-11  Score=91.38  Aligned_cols=254  Identities=17%  Similarity=0.178  Sum_probs=138.8

Q ss_pred             CCCCCEEEEEEEEECCCCCCCHHHHHHHH--CCCH-HHEEECCCCCEE-E---EECC------------CCCHHHHHHHH
Q ss_conf             96662099999973588613888999880--9997-683111475088-9---9489------------88799999999
Q gi|254780489|r    1 MIKSSSCILGFGHAVPNQCIHNSIIERHL--NLKL-GVIEQKTGIKYR-Y---WAEK------------HETLTDIAIQA   61 (325)
Q Consensus         1 M~~~~~~I~g~g~~lP~~~i~n~~l~~~~--~~~~-~~i~~~tGI~~R-~---~~~~------------~e~~~~la~~A   61 (325)
                      ||+ .+.|+|+|.--|-- .+-+++-+.+  |... ..+.+....... +   +.++            +.....++..|
T Consensus         1 Mm~-rVvITGiGivsplG-~~~~~~w~~L~~G~s~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~l~~~~~R~~~~a~~A   78 (395)
T PRK09185          1 MMT-PVYITAFGATSALG-AGLDAILAALRAGRASGMRPCDFGWLPLPTWVGEVDGVDLPALPAALADFDCRNNRLALLA   78 (395)
T ss_pred             CCC-CEEEECHHHCCCCC-CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCHHHHHHHHH
T ss_conf             998-69994620048780-8999999999848987646766665578822787468554437277763235777999999


Q ss_pred             HHHHHHHCC-----CCCCCCCEEEEEEEE------------------E-CCCC----C-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999864301-----322234425884310------------------0-2368----8-743221121002386333421
Q gi|254780489|r   62 GDIALRNAN-----IKKDSISLTLLATST------------------P-DHLL----P-PSSPLITHRLGLMQSGAIDLT  112 (325)
Q Consensus        62 a~~aL~~a~-----~~~~dId~ii~~s~t------------------~-d~~~----P-~~a~~v~~~Lg~~~~~~~di~  112 (325)
                      ++++++..+     ++++.+.+++-.+..                  | ++..    | +.+..|+..+|++. +++-++
T Consensus        79 ~~~~~~a~~~a~~~~~~~riGvviGts~gg~~~~e~~~~~~~~~~~~p~~~~~~~~~~~~~a~~Ia~~~gl~G-p~~t~~  157 (395)
T PRK09185         79 LQQIEPAVEAAIARYGADRIGVVLGTSTSGILEGEEAYARRDPHGAFPADFHYAQQELGSPADFLRAYLGLSG-PAYTIS  157 (395)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-CCEEEC
T ss_conf             9999999852053349876899995470118999999999723798887511000250149999999968989-632001


Q ss_pred             CCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCC---------------CCCCC-CCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             01231012567657887438-850588620122444---------------46222-44343254420011220576544
Q gi|254780489|r  113 GACAGFLYALVMADSYINSH-QKPVLIIAANLLSRR---------------INLED-KDTAIIFGDAAGAVVLAPSPLKD  175 (325)
Q Consensus       113 ~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S~~---------------~d~~d-~~~~~lfGDgA~A~il~~~~~~~  175 (325)
                      .+|++++.||..|.++|+.| .+.+++.++|.++..               ..|-| ....+.+|+||+++||++.....
T Consensus       158 ~ACaSg~~Ai~~A~~~I~~G~~d~~i~Gg~d~l~~~~~~~f~~~~~ls~~~~rPFd~~r~G~v~gEGa~~~vLE~~~~a~  237 (395)
T PRK09185        158 TACSSSAKVFASARRLLEAGLCDAVIVGGVDSLCRLTLNGFNSLESLSPGPCQPFSANRDGINIGEAAAFFLLRPATRDD  237 (395)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECEEEEEEECHHHCCC
T ss_conf             44608999999999999859988899802122455205787764224667887655799973650568999974556299


Q ss_pred             CCC-CEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             453-1135532136776527830698667654455655232245145434320100367898899740120012246305
Q gi|254780489|r  176 KSG-ILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPH  254 (325)
Q Consensus       176 ~~~-il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~H  254 (325)
                      ... +++.-..+|+.+     +.                .-..+|.        -..++++++|++++++++||||+-.|
T Consensus       238 ~~~~~~G~~~~~da~~-----~~----------------~p~p~g~--------g~~~am~~Al~~a~~~~~di~yv~aH  288 (395)
T PRK09185        238 AAVLLLGVGESSDAHH-----MS----------------APHPEGL--------GARLAMQAALADAGLEAADIGYINLH  288 (395)
T ss_pred             CCEEEEEEEECCCCCC-----CC----------------CCCCCHH--------HHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf             9789999885167777-----77----------------8898889--------99999999999739993436669961


Q ss_pred             CCCCHHH-----HHHHHHCCCCHHHHH--HHHHHCCCCCCCH
Q ss_conf             6541389-----999997197865700--2185409330005
Q gi|254780489|r  255 QANSRII-----QKVCEKIGLSKRIMV--NSLKDFGNSSSAS  289 (325)
Q Consensus       255 q~~~~~~-----~~~~~~lgi~~~~~~--~~l~~~GN~~sAs  289 (325)
                      -.+-..-     .++.+.+|   ++.+  .+=..+||+-.|+
T Consensus       289 gtgT~~~D~~E~~Ai~~vfg---~~~pvss~Ks~~GH~lgaa  327 (395)
T PRK09185        289 GTATPLNDAMESRAVAAVFG---DTVPCSSTKPLTGHTLGAA  327 (395)
T ss_pred             CCCCCCCCHHHHHHHHHHHC---CCCCCCCCCCHHCCCHHHH
T ss_conf             67686658999999999848---8862467641104307889


No 92 
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=99.35  E-value=8.2e-11  Score=90.54  Aligned_cols=97  Identities=12%  Similarity=0.085  Sum_probs=82.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887432211210023-863334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+..+++.+|++++++|++||-||++.+.+.-.-+..+..++-..|++ .++++.|+..|.+++.|+.+|...
T Consensus        23 ~~~~~~~L~a~vi~~~l~r~~i~p~~Id~Vi~G~v~~~~~g~n~AR~aaL~aGlp~~vp~~TVnr~C~SGl~Ai~~aa~~  102 (392)
T PRK06633         23 STTPAPMLAAHLIKDILQNSKIDPALVNEVILGQVITGGSGQNPARQTLIHAGIPKEVPGYTINKVCGSGLKSVALAANS  102 (392)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             88988999999999999874999899998999915756656669999999769998887268877337999999999999


Q ss_pred             HHCCC-CEEEEEEECCCCC
Q ss_conf             74388-5058862012244
Q gi|254780489|r  129 INSHQ-KPVLIIAANLLSR  146 (325)
Q Consensus       129 i~~g~-~~vLVv~~e~~S~  146 (325)
                      |++|. .-++..+.|.+|.
T Consensus       103 I~~G~~dvviaGGvEsmS~  121 (392)
T PRK06633        103 IMTGDNEIVIAGGQENMSL  121 (392)
T ss_pred             HHCCCCCEEEEECCCCCCC
T ss_conf             9679986777403354554


No 93 
>PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=99.35  E-value=7.2e-11  Score=90.89  Aligned_cols=254  Identities=16%  Similarity=0.169  Sum_probs=138.9

Q ss_pred             CEEEEEEEEECCCCCCCHHHHHHHH--CCC-HHHEEE--CCCCCEEEEECCC---------------CCHHHHHHHHHHH
Q ss_conf             2099999973588613888999880--999-768311--1475088994898---------------8799999999999
Q gi|254780489|r    5 SSCILGFGHAVPNQCIHNSIIERHL--NLK-LGVIEQ--KTGIKYRYWAEKH---------------ETLTDIAIQAGDI   64 (325)
Q Consensus         5 ~~~I~g~g~~lP~~~i~n~~l~~~~--~~~-~~~i~~--~tGI~~R~~~~~~---------------e~~~~la~~Aa~~   64 (325)
                      ++.|+|+|.--|-- .+.+++-+.+  +.+ ..++.+  ..|.+.+.....+               .....++..|+++
T Consensus         3 rVvITG~G~vsp~G-~~~~e~w~~L~~G~sgi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~r~~~~~~~~a~~Aa~e   81 (406)
T PRK07967          3 RVVITGLGIVSSIG-NNQQEVLASLREGRSGITFSQEFAELGMRSQVWGNVKLDPEELIDRKVMRFMGDAAAYAYLAMEQ   81 (406)
T ss_pred             EEEEECCEEECCCC-CCHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEECCCCHHHCCCHHHHHCCCHHHHHHHHHHHH
T ss_conf             19998543789882-99999999998199976668854445997616775688936608988870279999999999999


Q ss_pred             HHHHCCCCCCCCC----EEEEEEEEEC------------------CCCC--------C-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8643013222344----2588431002------------------3688--------7-432211210023863334210
Q gi|254780489|r   65 ALRNANIKKDSIS----LTLLATSTPD------------------HLLP--------P-SSPLITHRLGLMQSGAIDLTG  113 (325)
Q Consensus        65 aL~~a~~~~~dId----~ii~~s~t~d------------------~~~P--------~-~a~~v~~~Lg~~~~~~~di~~  113 (325)
                      ||++||+++++++    -|+.++..+.                  ...|        + .+..+...+|++. +++-+..
T Consensus        82 Al~dAGl~~~~~~~~r~Gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~a~~is~~~~l~G-p~~tv~~  160 (406)
T PRK07967         82 AIADAGLSEDQVSNPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIKG-VNYSISS  160 (406)
T ss_pred             HHHHCCCCHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCC
T ss_conf             999759982455856548999278731888999999987418976228348998866689999999848999-7535454


Q ss_pred             CCCCCHHHHHHHHHHHHCCC-CEEEEEEECCCCCC----------------------CCCCC-CCCCCCCCCCEEEEEEC
Q ss_conf             12310125676578874388-50588620122444----------------------46222-44343254420011220
Q gi|254780489|r  114 ACAGFLYALVMADSYINSHQ-KPVLIIAANLLSRR----------------------INLED-KDTAIIFGDAAGAVVLA  169 (325)
Q Consensus       114 ~C~g~l~aL~~A~~~i~~g~-~~vLVv~~e~~S~~----------------------~d~~d-~~~~~lfGDgA~A~il~  169 (325)
                      +|++++.||..|..+|+.|. +.+++.++|.++..                      ..|-| +...+.+|+||+++||+
T Consensus       161 aCas~~~Ai~~A~~~i~~G~~d~~i~GG~d~~~~~~~~~~~~~~~l~~~~~~~P~~~~rPFd~~r~G~v~gEGa~~lvLE  240 (406)
T PRK07967        161 ACATSAHCIGNAVEQIQLGKQDIVFAGGGEELDWEMSCLFDAMGALSTKYNDTPEKASRAYDANRDGFVIAGGGGVVVVE  240 (406)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEH
T ss_conf             21278899999999997699787771440235751344677777776224779876756666889984147757998610


Q ss_pred             CCCCCCCC--CCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             57654445--3113553213677652783069866765445565523224514543432010036789889974012001
Q gi|254780489|r  170 PSPLKDKS--GILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQD  247 (325)
Q Consensus       170 ~~~~~~~~--~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~d  247 (325)
                      +.+.....  .|.... ...+...|.                  .++...++.        -..++++++|+..+   .|
T Consensus       241 ~~e~A~~rGa~i~a~i-~g~g~~~d~------------------~~~~~p~~~--------g~~~~~~~al~~~~---~~  290 (406)
T PRK07967        241 ELEHALARGAKIYAEI-VGYGATSDG------------------YDMVAPSGE--------GAVRCMQMALATVD---TP  290 (406)
T ss_pred             HHHHHHHCCCEEEEEE-ECCEECCCC------------------CCCCCCCHH--------HHHHHHHHHHHCCC---CC
T ss_conf             1688986899789999-353431589------------------888798789--------99999999982644---34


Q ss_pred             CCEEEECCCCCHH-----HHHHHHHCCCCHHHHHHHHHHCCCCCCCHH
Q ss_conf             2246305654138-----999999719786570021854093300059
Q gi|254780489|r  248 INRFIPHQANSRI-----IQKVCEKIGLSKRIMVNSLKDFGNSSSASI  290 (325)
Q Consensus       248 id~~i~Hq~~~~~-----~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi  290 (325)
                      |||+..|-.+-..     .+++.+.+|=....+-.+=..+||+-+|+=
T Consensus       291 idyi~aHgtgt~~~D~~E~~Ai~~~fg~~~~~v~s~K~~~GH~~~aaG  338 (406)
T PRK07967        291 IDYINPHGTSTPVGDVKELGAIREVFGDKCPAISATKSLTGHSLGAAG  338 (406)
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHH
T ss_conf             658995457687889999999999867789830166565456517679


No 94 
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.34  E-value=1.9e-11  Score=94.70  Aligned_cols=208  Identities=20%  Similarity=0.233  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHCCCC-CC-----CCCEEEEEEEEEC-----------------CC--------CCC-CCCCCCCCC
Q ss_conf             9999999999986430132-22-----3442588431002-----------------36--------887-432211210
Q gi|254780489|r   54 LTDIAIQAGDIALRNANIK-KD-----SISLTLLATSTPD-----------------HL--------LPP-SSPLITHRL  101 (325)
Q Consensus        54 ~~~la~~Aa~~aL~~a~~~-~~-----dId~ii~~s~t~d-----------------~~--------~P~-~a~~v~~~L  101 (325)
                      .+.|++.|+++||++||+. .+     ++. |++++...+                 ..        +|+ .++.|...+
T Consensus         4 ~~~~a~~AA~eAl~dAGl~~~~~~~~~r~G-V~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~   82 (336)
T PRK09116          4 VSLMATRASELALADAGLLGDPILTDGRMG-VAYGSSTGSTDPIGAFGTMLLTGSMSGITATTYVRMMPHTTAVNVGLFF   82 (336)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCEE-EEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHH
T ss_conf             899999999999996599998667888889-9999574768999999999971898764835776532229999999996


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCE-EEEEEECCCCCCC---------------------CCCC-CCCCCC
Q ss_conf             0238633342101231012567657887438850-5886201224444---------------------6222-443432
Q gi|254780489|r  102 GLMQSGAIDLTGACAGFLYALVMADSYINSHQKP-VLIIAANLLSRRI---------------------NLED-KDTAII  158 (325)
Q Consensus       102 g~~~~~~~di~~~C~g~l~aL~~A~~~i~~g~~~-vLVv~~e~~S~~~---------------------d~~d-~~~~~l  158 (325)
                      |++. +++-++.+|++++.||..|..+|+.|... +++-++|.++...                     .|-| ....+.
T Consensus        83 ~l~G-ps~tv~tACsSs~~Al~~A~~~I~~G~~d~~i~Gg~~~l~~~~~~~f~~l~~~s~~~~~p~~~~rPFD~~r~G~v  161 (336)
T PRK09116         83 GLKG-RVIPTSSACTSGSQGIGYAYEAIKYGYQTLMLAGGAEELCPTEAAVFDTLFATSTKNDAPELTPRPFDANRDGLV  161 (336)
T ss_pred             CCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
T ss_conf             8999-751635541689999999999997599888993500026880789999999983489999877787778999547


Q ss_pred             CCCCEEEEEECCCCCCCC--CCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Q ss_conf             544200112205765444--531135532136776527830698667654455655232245145434320100367898
Q gi|254780489|r  159 FGDAAGAVVLAPSPLKDK--SGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQ  236 (325)
Q Consensus       159 fGDgA~A~il~~~~~~~~--~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~  236 (325)
                      .|+|++++||++.+....  ..|.... ...+...|.                  .++...++        ....+++++
T Consensus       162 ~gEGa~~lvLe~~~~A~~rga~i~a~i-~G~~~~~dg------------------~~~t~P~~--------~~~~~~~~~  214 (336)
T PRK09116        162 IGEGAGTLVLEELEHAKARGATIYAEI-VGFGTNSDG------------------AHVTQPQA--------ETMQIAMEL  214 (336)
T ss_pred             ECCEEEEEEEEEHHHHHHCCCEEEEEE-ECEEECCCC------------------CCCCCCCH--------HHHHHHHHH
T ss_conf             704347999728899986799579998-120660488------------------88989799--------999999999


Q ss_pred             HHHHHCCCCCCCCEEEECCCCCHH-----HHHHHHHCCCCHHHHHH-HHHHCCCCCCCHHHH
Q ss_conf             899740120012246305654138-----99999971978657002-185409330005999
Q gi|254780489|r  237 SLRKSDLQPQDINRFIPHQANSRI-----IQKVCEKIGLSKRIMVN-SLKDFGNSSSASIPL  292 (325)
Q Consensus       237 ~l~~~gl~~~did~~i~Hq~~~~~-----~~~~~~~lgi~~~~~~~-~l~~~GN~~sAsi~~  292 (325)
                      +|+++|++++||||+-.|-.+-..     .+++.+.++-  +.-+. +=..+||+..|+=.+
T Consensus       215 al~~ag~~~~~i~yI~aHgtgT~~gD~~E~~ai~~~fg~--~~pi~S~Ks~~GH~~gAaG~~  274 (336)
T PRK09116        215 ALKDAGLAPEDIGYVNAHGTATDRGDIAESQATAAVFGA--RMPISSLKSYFGHTLGACGAL  274 (336)
T ss_pred             HHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCC--CCCCCCCCCCCCCCHHHHHHH
T ss_conf             999709880212289953777888899999999998576--788877642104417779999


No 95 
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed
Probab=99.34  E-value=2e-11  Score=94.59  Aligned_cols=98  Identities=12%  Similarity=0.047  Sum_probs=80.5

Q ss_pred             CCCCHHHHHHHHHHHHHHH-CCCCCCCCCEEEEEEEEECC-CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             9887999999999998643-01322234425884310023-6887432211210023-8633342101231012567657
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRN-ANIKKDSISLTLLATSTPDH-LLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMAD  126 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~-a~~~~~dId~ii~~s~t~d~-~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~  126 (325)
                      .+.++.+|+..+++.+|+| ++++|++||-||++++.+.. .-...+..+.-.-|++ .++++.|+..|.+++.|+.+|.
T Consensus        23 ~~~~~~~L~a~~i~~~l~r~~~l~~~~Id~vi~G~v~~~~~~g~n~aR~aaL~aGlp~~vpa~tVnr~C~SGl~Ai~~Aa  102 (387)
T PRK08947         23 RNVRAEDLSAHLMRALLARNPALDPAEIEDIIWGCVQQTLEQGFNIARNAALLAGIPHTVPAVTVNRLCGSSMQALHDAA  102 (387)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHH
T ss_conf             88999999999999999745896989989899970665544333599999997699988861664014237999999999


Q ss_pred             HHHHCC-CCEEEEEEECCCCCC
Q ss_conf             887438-850588620122444
Q gi|254780489|r  127 SYINSH-QKPVLIIAANLLSRR  147 (325)
Q Consensus       127 ~~i~~g-~~~vLVv~~e~~S~~  147 (325)
                      +.|++| .+-+++.+.|.+|+.
T Consensus       103 ~~I~~G~~dvvlaGGvEsMS~~  124 (387)
T PRK08947        103 RAIMTGDGDVFLIGGVEHMGHV  124 (387)
T ss_pred             HHHCCCCCCEEEEEEECCCCCC
T ss_conf             8652799778998410225778


No 96 
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=99.33  E-value=2.3e-11  Score=94.17  Aligned_cols=98  Identities=23%  Similarity=0.224  Sum_probs=83.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887432211210023-863334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+..+.+.+|++++++|++||-||++.+.+....+..|..++-..|++ .++++.|+..|.+++.|+.+|...
T Consensus        23 ~~~~~~~L~a~~i~~~l~r~~i~p~~Id~Vi~G~v~~~~~~~n~AR~aaL~aGlp~~vp~~TVnr~C~SGl~Ai~~Aa~~  102 (426)
T PRK08170         23 GPFSASDLAVQAGRALLNRQPFAPDDLDEVILGCAMPSPDEANIGRVAALRLGCGEDVPGWTVQRNCASGMQALDSAARN  102 (426)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             88898999999999999974999899998999933625666779999999769998887267766123799999999999


Q ss_pred             HHCCC-CEEEEEEECCCCCC
Q ss_conf             74388-50588620122444
Q gi|254780489|r  129 INSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       129 i~~g~-~~vLVv~~e~~S~~  147 (325)
                      |++|. .-++..+.|.+|+.
T Consensus       103 I~~G~~dvviAGGvEsMS~~  122 (426)
T PRK08170        103 IALGRADLVLAGGTEALSRA  122 (426)
T ss_pred             HHCCCCCEEEEECCCCCCCC
T ss_conf             85599888999372204567


No 97 
>PRK09268 acetyl-CoA acetyltransferase; Provisional
Probab=99.32  E-value=3.8e-11  Score=92.69  Aligned_cols=98  Identities=14%  Similarity=0.046  Sum_probs=80.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887432211210023-863334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+..+++.+|++++++|++||-||++.+.+.-..+..|..+.-.-|++ .++++.|+..|.+++.|+.+|.+.
T Consensus        27 ~~~~~~~L~~~~i~~~l~r~gi~~~~iD~vi~G~v~~~g~~~n~aR~~aL~aGlp~~vp~~TVnr~C~SGl~Ai~~Aa~~  106 (428)
T PRK09268         27 ADASNQDMLTAALDGLVERFGLHGERLGEVVAGAVLKHSRDFNLTRECVLGSALSPETPAYDLQQACGTGLEAAILVANK  106 (428)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHH
T ss_conf             88988999999999999982999899998999935765656539999999669898887268852757999999999999


Q ss_pred             HHCCC-CEEEEEEECCCCCC
Q ss_conf             74388-50588620122444
Q gi|254780489|r  129 INSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       129 i~~g~-~~vLVv~~e~~S~~  147 (325)
                      |++|. .-++..+.|.+|+.
T Consensus       107 I~~G~~dvviAGGvEsmS~~  126 (428)
T PRK09268        107 IALGQIDSGIAGGVDTTSDA  126 (428)
T ss_pred             HHCCCCCEEEEECCCCCCCC
T ss_conf             98799988999461235678


No 98 
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=99.30  E-value=4.3e-11  Score=92.39  Aligned_cols=222  Identities=18%  Similarity=0.206  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCE----EEEEEEEECC--------------CCC-----CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999986430132223442----5884310023--------------688-----743221121002386333421
Q gi|254780489|r   56 DIAIQAGDIALRNANIKKDSISL----TLLATSTPDH--------------LLP-----PSSPLITHRLGLMQSGAIDLT  112 (325)
Q Consensus        56 ~la~~Aa~~aL~~a~~~~~dId~----ii~~s~t~d~--------------~~P-----~~a~~v~~~Lg~~~~~~~di~  112 (325)
                      -|+.+++++||++||+++++++-    |+.++++.++              ..|     ..+.+|...+|++. +++-++
T Consensus        89 rl~L~~a~eAl~dAG~~~~~~~~~r~GV~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~~~~G-p~~~v~  167 (421)
T cd00833          89 RLLLEVAWEALEDAGYSPESLAGSRTGVFVGASSSDYLELLARDPDEIDAYAATGTSRAFLANRISYFFDLRG-PSLTVD  167 (421)
T ss_pred             HHHHHHHHHHHHHCCCCHHHCCCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCCC
T ss_conf             9999999999975289834648863499966666647889742756578530135431179999999968999-600335


Q ss_pred             CCCCCCHHHHHHHHHHHHCCC-CEEEEEEECC-CCC----------CC------CCCC-CCCCCCCCCCEEEEEECCCCC
Q ss_conf             012310125676578874388-5058862012-244----------44------6222-443432544200112205765
Q gi|254780489|r  113 GACAGFLYALVMADSYINSHQ-KPVLIIAANL-LSR----------RI------NLED-KDTAIIFGDAAGAVVLAPSPL  173 (325)
Q Consensus       113 ~~C~g~l~aL~~A~~~i~~g~-~~vLVv~~e~-~S~----------~~------d~~d-~~~~~lfGDgA~A~il~~~~~  173 (325)
                      .+|++++.||..|.++|+.|. +.+++.+++. .+.          .+      .+-| ....++.|+||+++||++.+.
T Consensus       168 tACaSsl~Ai~~A~~~i~~G~~d~ai~Gg~~~~~~~~~~~~~~~~~~ls~~~~~rpFD~~~~G~v~gEGa~~lvLe~~~~  247 (421)
T cd00833         168 TACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLSPDGRCRPFDADADGYVRGEGVGVVVLKRLSD  247 (421)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEEEECEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHH
T ss_conf             36279999999999998579943544120003158689999863578689998567888999865557513543687899


Q ss_pred             CC--CCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf             44--4531135532136776527830698667654455655232245145434320100367898899740120012246
Q gi|254780489|r  174 KD--KSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRF  251 (325)
Q Consensus       174 ~~--~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~  251 (325)
                      ..  +..|.... ...+...|.                +.......++        +...++++++|++++++++||||+
T Consensus       248 A~~~g~~I~a~i-~G~g~~~dg----------------~~~~~~~P~~--------~~~~~~~~~al~~agi~~~~i~yi  302 (421)
T cd00833         248 ALRDGDRIYAVI-RGSAVNQDG----------------RTKGITAPSG--------EAQAALIRRAYARAGVDPSDIDYV  302 (421)
T ss_pred             HHHCCCCEEEEE-EEEEECCCC----------------CCCCCCCCCH--------HHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             987699479999-899980689----------------7778888756--------689999999999729994412089


Q ss_pred             EECCCCCHH-----HHHHHHHCCCCH---HHHH--HHHHHCCCCCCCHHHHHHHH---HHHHCCC
Q ss_conf             305654138-----999999719786---5700--21854093300059999999---9980678
Q gi|254780489|r  252 IPHQANSRI-----IQKVCEKIGLSK---RIMV--NSLKDFGNSSSASIPLSLSL---ENQRKPF  303 (325)
Q Consensus       252 i~Hq~~~~~-----~~~~~~~lgi~~---~~~~--~~l~~~GN~~sAsi~~~L~~---~~~~g~i  303 (325)
                      -.|-.+...     .+++.+.++=..   .+.+  .+=..+||+-+|+-.+.+-.   +++.+.+
T Consensus       303 eaHgtgT~~gD~~E~~ai~~~f~~~~~~~~~~~v~S~Ks~~GH~~~AaG~~~~i~~~lal~~~~i  367 (421)
T cd00833         303 EAHGTGTPLGDPIEVEALAKVFGGSRSADQPLLIGSVKSNIGHLEAAAGLAGLIKVVLALEHGVI  367 (421)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             97447686669999999999961257777863023543453433576799999999999855982


No 99 
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated
Probab=99.27  E-value=4.1e-10  Score=85.97  Aligned_cols=245  Identities=18%  Similarity=0.211  Sum_probs=148.8

Q ss_pred             CHHHHHHHHHHHHHHHCC-CCCCCCCEEEEEEEE--ECCCCC---CCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHH
Q ss_conf             799999999999864301-322234425884310--023688---7432211210023-863334210123101256765
Q gi|254780489|r   53 TLTDIAIQAGDIALRNAN-IKKDSISLTLLATST--PDHLLP---PSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMA  125 (325)
Q Consensus        53 ~~~~la~~Aa~~aL~~a~-~~~~dId~ii~~s~t--~d~~~P---~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A  125 (325)
                      ....|+..|.+++|++.. ..+.++.+++....-  |....+   .....+...+|.. +..+.-+..||.+++.+|..|
T Consensus        63 Rl~~la~~Al~eal~~~~~~~~~~~~l~l~l~e~~r~g~~~~~~~~~l~~l~~~~g~~~~~~s~~~~~G~as~~~al~~A  142 (346)
T PRK06147         63 RLAAMAAPALAEALEGLPALDASEAPLLLCVAEEERPGRPAGLEERLLRSLEEELGLRFEPGSAVIARGRVSGAVALLQA  142 (346)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHH
T ss_conf             99999999999998507865632364699836655777875105789999998727566766056525630499999999


Q ss_pred             HHHHHCC-CCEEEEEEECCCCC------------CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC--CEEEEEEECCCC
Q ss_conf             7887438-85058862012244------------44622244343254420011220576544453--113553213677
Q gi|254780489|r  126 DSYINSH-QKPVLIIAANLLSR------------RINLEDKDTAIIFGDAAGAVVLAPSPLKDKSG--ILGIELTSDGSK  190 (325)
Q Consensus       126 ~~~i~~g-~~~vLVv~~e~~S~------------~~d~~d~~~~~lfGDgA~A~il~~~~~~~~~~--il~~~~~s~~~~  190 (325)
                      ..+|+.| ...+||.+.|.+-.            ..... ....|+-|.||++++|++.......+  ++..-+.+.+..
T Consensus       143 ~~~l~~g~~~~~lv~GvDS~~~~~~l~~~~~~~rL~~~~-~~~GfvpGEgAa~llL~~~~~a~~rga~i~g~g~g~e~a~  221 (346)
T PRK06147        143 RRLIAAGGCPRVLVAGVDSLLTGPTLAHYEARERLLSSQ-NSNGFIPGEAAAAVLLGRPAAARAPQLPCLGLGLGREPAT  221 (346)
T ss_pred             HHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCC-CCCCCCCCCHHEEEEECCCCHHHCCCCCEEEEEEECCCCC
T ss_conf             999865999879999872347878999998605426899-9889585202047885261100147982345662036653


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHH-----HHH
Q ss_conf             652783069866765445565523224514543432010036789889974012001224630565413899-----999
Q gi|254780489|r  191 YDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQ-----KVC  265 (325)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~-----~~~  265 (325)
                      +                ...+.   -.+|        +-+.+.++.+|+.+++.+++|||++-|.-+.....     .+.
T Consensus       222 ~----------------~~~~~---p~~g--------~Gl~~A~~~Al~~ag~~~~~v~~~~ad~nGe~~r~~e~~~a~~  274 (346)
T PRK06147        222 V----------------ESEDL---PLRG--------DGLTQAFRAALAEAGIGLEDVGYRLADLNGEQYRFKEAALAES  274 (346)
T ss_pred             C----------------CCCCC---CCCC--------HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf             3----------------47789---9865--------7999999999986279856777799689988442137999999


Q ss_pred             HHCCCCHH--HHHHHHHHCCCCCCCHHHHHHHHHHHH--CCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf             97197865--700218540933000599999999980--6789998999998615510201019
Q gi|254780489|r  266 EKIGLSKR--IMVNSLKDFGNSSSASIPLSLSLENQR--KPFQKGEKILTISCRRGNDRGIYCL  325 (325)
Q Consensus       266 ~~lgi~~~--~~~~~l~~~GN~~sAsi~~~L~~~~~~--g~i~~Gd~vll~~~G~G~s~ga~lL  325 (325)
                      +.++.+.+  .++..-..+||+++|+-++.+.-+...  +..-||.++|+++-.=+-..++++|
T Consensus       275 R~~~~~~~~~~~~~pa~~~G~~GAA~G~~~~a~a~~a~~~g~~pg~~~l~~~s~d~g~r~A~~l  338 (346)
T PRK06147        275 RLFRVPHEFPDLWHPAECLGECGAALGPALLGVALAASRKGYGPGPPVLCHASDDDGARGAAVL  338 (346)
T ss_pred             HHHCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEE
T ss_conf             7520256666656877751647889999999999999982868998679995478875269998


No 100
>PRK07661 acetyl-CoA acetyltransferase; Provisional
Probab=99.27  E-value=1.7e-10  Score=88.47  Aligned_cols=97  Identities=20%  Similarity=0.153  Sum_probs=78.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECC-CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             988799999999999864301322234425884310023-6887432211210023-86333421012310125676578
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDH-LLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADS  127 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~-~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~  127 (325)
                      .+.++.+|+..+++++|++++++ .+||-||++.+.+.- .-...+..+.-.-|++ .++++.|+..|.+++.|+..|.+
T Consensus        17 ~~~~~~~L~a~~i~~~l~r~~i~-~~id~vi~G~~~~~~~~g~n~aR~aal~aGlp~~vp~~TVnr~C~SGl~Ai~~aa~   95 (384)
T PRK07661         17 KTVRPDDLGALVVKETLKRANYE-GPIDDLIIGCAMPEAEQGLNMARNIGALAGLPYTVPAITINRYCSSGLQSIAYGAE   95 (384)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             99999999999999999860989-63596999947664655666999999976999887726773502168999999999


Q ss_pred             HHHCCC-CEEEEEEECCCCCC
Q ss_conf             874388-50588620122444
Q gi|254780489|r  128 YINSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       128 ~i~~g~-~~vLVv~~e~~S~~  147 (325)
                      .|++|. +-++..+.|.+|+.
T Consensus        96 ~I~~G~~dvviAGGvEsMS~~  116 (384)
T PRK07661         96 RIMLGHSEAVLAGGAESMSLV  116 (384)
T ss_pred             HHHCCCCCEEEECCEECCCCC
T ss_conf             997699767875462122578


No 101
>PRK07937 lipid-transfer protein; Provisional
Probab=99.25  E-value=3.7e-10  Score=86.27  Aligned_cols=225  Identities=15%  Similarity=0.036  Sum_probs=129.3

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             7999999999998643013222344258843100236887432--21121002386333421012310125676578874
Q gi|254780489|r   53 TLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSP--LITHRLGLMQSGAIDLTGACAGFLYALVMADSYIN  130 (325)
Q Consensus        53 ~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~--~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~  130 (325)
                      +..+|+.+|+++||++||++++|||.+++++.  |++....-.  .....||.  .+.+.+++.|.++..|+..|...|+
T Consensus        23 ~~~eL~~eA~~~Al~DAGl~~~DId~~~~g~~--d~~~G~~~~~~~~~~~lg~--~p~~~~~~~~~sg~~Al~~A~~aI~   98 (352)
T PRK07937         23 NGVEMLMPCFAQLYEELGITKADIGFWCSGSS--DYLAGRAFSFISAIDSIGA--VPPINESHVEMDAAWALYEAYIKIL   98 (352)
T ss_pred             CHHHHHHHHHHHHHHHCCCCHHHCCEEEEECC--CCCCCCCHHHHHHHHHCCC--CCCEEEECEECCHHHHHHHHHHHHH
T ss_conf             99999999999999984999899978967146--5345410135777764368--7745330102229999999999986


Q ss_pred             CC-CCEEEEEEECCCCCC---------CCCC-------------------------------------------------
Q ss_conf             38-850588620122444---------4622-------------------------------------------------
Q gi|254780489|r  131 SH-QKPVLIIAANLLSRR---------INLE-------------------------------------------------  151 (325)
Q Consensus       131 ~g-~~~vLVv~~e~~S~~---------~d~~-------------------------------------------------  151 (325)
                      +| .+.+||++.|.+|..         .|+.                                                 
T Consensus        99 sG~~d~vLvvG~ek~s~g~~~~~~~~~~dp~~~~~~~~~~~~~~al~ar~~m~~~g~t~E~lA~Vavkn~~nA~~NP~A~  178 (352)
T PRK07937         99 TGEVDTALVYGFGKSSAGTLRRVLARQLDPYTVAPLWPDSVSMAGLQARLGLDAGKWTEEQMAEVAADSFADARRNDSAQ  178 (352)
T ss_pred             CCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             78999899987336687753333334578113133446278999999999998549999999999999988772198766


Q ss_pred             ---------------CCCC---CCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCC-CCCCCCCCC
Q ss_conf             ---------------2443---432544200112205765444531135532136776527830698667-654455655
Q gi|254780489|r  152 ---------------DKDT---AIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTS-PAGTNTHDF  212 (325)
Q Consensus       152 ---------------d~~~---~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~  212 (325)
                                     ++.+   .-..+|||+|+||..++...+..--.            .++.+.+... ......++.
T Consensus       179 ~~~tvedvl~s~~ia~PL~~~dc~p~sDGAaAvVl~s~e~Ar~l~~~p------------v~I~g~~~~~~~~~~~~~dl  246 (352)
T PRK07937        179 PSISVDELLARPYFADPLRRHDIAPITDGAAAIVLAAGDRARELRERP------------AWITGIEHRIETPALGARDL  246 (352)
T ss_pred             CCCCHHHHHCCCEECCCCCHHHHCCCCCEEEEEEEECHHHHHHCCCCC------------EEEEEEEEECCCCCCCCCCC
T ss_conf             789999982688355788566508878726999995599997566897------------89999898436887776655


Q ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH----HHHCCCCCCC
Q ss_conf             232245145434320100367898899740120012246305654138999999719786570021----8540933000
Q gi|254780489|r  213 YMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS----LKDFGNSSSA  288 (325)
Q Consensus       213 ~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~----l~~~GN~~sA  288 (325)
                                     ...+.......+.+|++++|||.+=.|-.-...--...+.||+. .+++.|    +-- ||-..|
T Consensus       247 ---------------~~~~~~~~aa~~aagi~p~DiDvaElhD~Fs~~el~~~E~LGl~-g~~pVN~sGG~ls-ghp~gA  309 (352)
T PRK07937        247 ---------------TVSPSTAAAAEAATGGDTGDIDVAELHAPFTHQELILAEAIGLP-DKTKVNPSGGALA-ANPMFA  309 (352)
T ss_pred             ---------------CCCHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHCCCC-CCCCCCCCCCCCC-CCCCCH
T ss_conf             ---------------23799999999974999534757887257507789998842889-9954668986210-698642


Q ss_pred             HHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             5999999999806789998999
Q gi|254780489|r  289 SIPLSLSLENQRKPFQKGEKIL  310 (325)
Q Consensus       289 si~~~L~~~~~~g~i~~Gd~vl  310 (325)
                      +=...+.++.++-+=+.|++-+
T Consensus       310 tGl~~~~E~~~ql~~~~~~rqv  331 (352)
T PRK07937        310 AGLERIGFAARHIWDGSARRAL  331 (352)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCC
T ss_conf             8999999999998555556325


No 102
>PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.25  E-value=6.5e-10  Score=84.64  Aligned_cols=268  Identities=15%  Similarity=0.158  Sum_probs=144.5

Q ss_pred             CEEEEEEEEECCCCCCCHHHHHHHH--CCC-HHHEEE--CCCCCEEEE-----------ECCC-----CCHHHHHHHHHH
Q ss_conf             2099999973588613888999880--999-768311--147508899-----------4898-----879999999999
Q gi|254780489|r    5 SSCILGFGHAVPNQCIHNSIIERHL--NLK-LGVIEQ--KTGIKYRYW-----------AEKH-----ETLTDIAIQAGD   63 (325)
Q Consensus         5 ~~~I~g~g~~lP~~~i~n~~l~~~~--~~~-~~~i~~--~tGI~~R~~-----------~~~~-----e~~~~la~~Aa~   63 (325)
                      .+.|+|+|.-.|--. +-+++-+.+  |.+ ...+..  ..+...+.-           ..+.     .....++..|++
T Consensus         3 RVvITGiG~vsp~G~-~~e~~w~~L~~G~sgi~~~~~~d~~~~~~~~ag~v~~fd~~~~~~~~~~~~~dr~~~lal~aa~   81 (405)
T PRK08439          3 RVVVTGMGMINSLGL-DKESSFKAICNGECGIKKITLFDASDFPVKIAGEITDFDPTEVMDPKEVKKADRFIQLGLKAAR   81 (405)
T ss_pred             CEEEECCEEECCCCC-CHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEEECCCCHHHCCCHHHHHHHCHHHHHHHHHHH
T ss_conf             199973134798718-9999999998399977748876766897418998388795673899999862899999999999


Q ss_pred             HHHHHCCCCC----CCCCEEEEEEEEE-----------------CCCCC----C-----CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9864301322----2344258843100-----------------23688----7-----432211210023863334210
Q gi|254780489|r   64 IALRNANIKK----DSISLTLLATSTP-----------------DHLLP----P-----SSPLITHRLGLMQSGAIDLTG  113 (325)
Q Consensus        64 ~aL~~a~~~~----~dId~ii~~s~t~-----------------d~~~P----~-----~a~~v~~~Lg~~~~~~~di~~  113 (325)
                      +||++||+..    +.+.. +.++...                 ....|    .     .+.+|...+|++. +++-++.
T Consensus        82 eAl~dAGl~~~~~~~r~Gv-~~gt~~g~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~a~~is~~~~~~G-p~~tv~t  159 (405)
T PRK08439         82 EAMKDAGFLEEHDKDRFGV-SSASGIGGLPNIEKNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGLKG-PNLSSVT  159 (405)
T ss_pred             HHHHHCCCCCCCCCCCEEE-EEEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHH
T ss_conf             9998448775577566799-9986677557799999999846976448027678888899999999839989-7656263


Q ss_pred             CCCCCHHHHHHHHHHHHCCC-CEEEEEEECC-CCCC---------------------CCCCC-CCCCCCCCCCEEEEEEC
Q ss_conf             12310125676578874388-5058862012-2444---------------------46222-44343254420011220
Q gi|254780489|r  114 ACAGFLYALVMADSYINSHQ-KPVLIIAANL-LSRR---------------------INLED-KDTAIIFGDAAGAVVLA  169 (325)
Q Consensus       114 ~C~g~l~aL~~A~~~i~~g~-~~vLVv~~e~-~S~~---------------------~d~~d-~~~~~lfGDgA~A~il~  169 (325)
                      +|++++.||..|.++|+.|. +.++|.++|. .+..                     ..|-| ....+..|+||+++||+
T Consensus       160 ACass~~Ai~~A~~~I~~G~~d~~ivgG~~~~l~~~~~~~f~~~~~ls~~~~~P~~~~rPFD~~r~G~v~gEGa~~lvLe  239 (405)
T PRK08439        160 ACAAGTHAIIEAVKTIMLGGADKMLVVGAESAICPVGIGGFASMKALSTRNDDPKKASRPFDKDRDGFVMGEGAGALVLE  239 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEEC
T ss_conf             75899999999999997089776774150220273568999875323025889654667876899847742467889724


Q ss_pred             CCCCCCC--CCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             5765444--53113553213677652783069866765445565523224514543432010036789889974012001
Q gi|254780489|r  170 PSPLKDK--SGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQD  247 (325)
Q Consensus       170 ~~~~~~~--~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~d  247 (325)
                      +.+....  ..|.... ...+...|.                  .++...+.        .-..++++++|+++|++  +
T Consensus       240 ~~~~A~~rga~i~a~i-~G~~~~~d~------------------~~~t~P~~--------~g~~~a~~~Al~~ag~~--~  290 (405)
T PRK08439        240 EYESAKKRGAKIYAEL-IGFGESGDA------------------NHITSPAP--------DGPLRAMKKALEMAGNP--K  290 (405)
T ss_pred             CHHHHHHCCCEEEEEE-EEECCCCCC------------------CCCCCCCH--------HHHHHHHHHHHHHCCCC--C
T ss_conf             4887865799689999-987676688------------------89989898--------99999999999975999--6


Q ss_pred             CCEEEECCCCCHH-----HHHHHHHCCCCHHHH-H-HHHHHCCCCCCCHHHHHHH---HHHHHCCCC
Q ss_conf             2246305654138-----999999719786570-0-2185409330005999999---999806789
Q gi|254780489|r  248 INRFIPHQANSRI-----IQKVCEKIGLSKRIM-V-NSLKDFGNSSSASIPLSLS---LENQRKPFQ  304 (325)
Q Consensus       248 id~~i~Hq~~~~~-----~~~~~~~lgi~~~~~-~-~~l~~~GN~~sAsi~~~L~---~~~~~g~i~  304 (325)
                      |||+-.|-.+-..     .+++.+.+|-..... + .+=..+||+-.|+=.+.+.   .+++.+.+.
T Consensus       291 idyi~aHgTgT~~gD~~E~~Ai~~vfg~~~~~~~v~S~Ks~iGH~~gAaG~~e~i~~~lal~~g~ip  357 (405)
T PRK08439        291 VDYVNAHGTSTPYNDKNETAALKELFGSKENVPPVSSTKGQIGHCLGAAGAIEAVISIMAMRDGILP  357 (405)
T ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             1179720576878789999999998566677888657310003236667899999999999649558


No 103
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional
Probab=99.25  E-value=7.7e-11  Score=90.73  Aligned_cols=98  Identities=11%  Similarity=0.059  Sum_probs=80.1

Q ss_pred             CCCCHHHHHHHHHHHHHHH-CCCCCCCCCEEEEEEEEECC-CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             9887999999999998643-01322234425884310023-6887432211210023-8633342101231012567657
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRN-ANIKKDSISLTLLATSTPDH-LLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMAD  126 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~-a~~~~~dId~ii~~s~t~d~-~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~  126 (325)
                      .+.++.+|+..+++.+|+| ++++|++||-||++.+.+.. ..+..+..++-.-|++ .++++.|+..|.+++.|+..|.
T Consensus        22 ~~~~~~~L~a~~i~~~l~r~~~i~~~~Id~Vi~G~~~~~g~~g~n~aR~~aL~aGlp~~vpa~TVnr~C~SGl~Ai~~aa  101 (400)
T PRK13359         22 SSVRADDLGAVPLKALVERNRDVDWAAIDDVIYGCANQAGEDNRNVARMSLLLAGLPHGVPGTTINRLCGSGMDAVGVAA  101 (400)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf             99988999999999999726997989999799982775565457689999997699988762676132114999999999


Q ss_pred             HHHHCCC-CEEEEEEECCCCCC
Q ss_conf             8874388-50588620122444
Q gi|254780489|r  127 SYINSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       127 ~~i~~g~-~~vLVv~~e~~S~~  147 (325)
                      ..|++|. +-++..+.|.+|+.
T Consensus       102 ~~I~~G~~dvviAGGvEsmS~~  123 (400)
T PRK13359        102 RAIKSGEAALMIAGGVESMSRA  123 (400)
T ss_pred             HHHHCCCCCEEEECCEECCCCC
T ss_conf             9985799887885155115556


No 104
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=99.23  E-value=4e-10  Score=86.04  Aligned_cols=98  Identities=9%  Similarity=0.075  Sum_probs=80.9

Q ss_pred             CCCCHHHHHHHHHHHHHHH-CCCCCCCCCEEEEEEEEECCC-CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             9887999999999998643-013222344258843100236-887432211210023-8633342101231012567657
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRN-ANIKKDSISLTLLATSTPDHL-LPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMAD  126 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~-a~~~~~dId~ii~~s~t~d~~-~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~  126 (325)
                      .+.++.+|+..+++.+|+| ++++|++||-||.+.+.+.-. .+..+..+.-..|++ .++++.|+..|.++++|+..|.
T Consensus        22 ~~~~~~~L~a~~i~~~l~r~~~l~~~~Id~vi~G~~~~~g~~g~n~aR~aal~aGlp~~vpa~TVnr~C~SGl~Ai~~Aa  101 (401)
T PRK09050         22 SSVRADDLGAVPLKALMERNPGVDWEAVDDVIYGCANQAGEDNRNVARMSALLAGLPVSVPGTTINRLCGSGMDAVGTAA  101 (401)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHH
T ss_conf             99988999999999999735896989989599963776574557699999997799988855786013078999999999


Q ss_pred             HHHHCCC-CEEEEEEECCCCCC
Q ss_conf             8874388-50588620122444
Q gi|254780489|r  127 SYINSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       127 ~~i~~g~-~~vLVv~~e~~S~~  147 (325)
                      +.|++|. .-+++.+.|.+|+.
T Consensus       102 ~~I~~G~~dv~iaGGvEsmS~~  123 (401)
T PRK09050        102 RAIKAGEAELMIAGGVESMSRA  123 (401)
T ss_pred             HHHHCCCCCEEEEECCCCCCCC
T ss_conf             9984799777986142355656


No 105
>pfam07451 SpoVAD Stage V sporulation protein AD (SpoVAD). This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation.
Probab=99.19  E-value=9.2e-10  Score=83.67  Aligned_cols=272  Identities=18%  Similarity=0.275  Sum_probs=160.0

Q ss_pred             CCCEEEEEEEEECCCCCCCHHHHHHHHCCC--HHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf             662099999973588613888999880999--768311147508899489887999999999998643013222344258
Q gi|254780489|r    3 KSSSCILGFGHAVPNQCIHNSIIERHLNLK--LGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTL   80 (325)
Q Consensus         3 ~~~~~I~g~g~~lP~~~i~n~~l~~~~~~~--~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii   80 (325)
                      .+..+|.+.++..-+.- .+--+.+.|+.-  +.+.-+++         ++.--..|-.+|++.||++++++++|||+++
T Consensus         8 ~~~p~I~s~asvvGpkE-g~GPL~~~FD~i~~D~~~G~~s---------wEkAE~~m~~~A~~~al~Ka~l~~~dId~~~   77 (329)
T pfam07451         8 ENPPVIISTASVVGPKE-GEGPLGDYFDIIYEDDLFGEDS---------WEKAESKMLEEAVKLALKKAGLKKDDIDYLL   77 (329)
T ss_pred             CCCCEEEEEEEEECCCC-CCCCCHHHCCEEECCCCCCCCC---------HHHHHHHHHHHHHHHHHHHCCCCHHHCEEEE
T ss_conf             69988999767867735-6788755377240264457343---------9999999999999999987499988864895


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCC---CCCC----CC-
Q ss_conf             8431002368874322112100238633342101231012567657887438-8505886201224---4446----22-
Q gi|254780489|r   81 LATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLS---RRIN----LE-  151 (325)
Q Consensus        81 ~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S---~~~d----~~-  151 (325)
                      .+--. .+..+  +++.++.|++|   -|.+=.+|+.+..+|.+|.-++.+| ++++|..++-.++   |.+.    |. 
T Consensus        78 aGDLl-nQ~i~--ssf~ar~l~iP---f~GlyGACST~~E~l~laa~~vd~g~A~~vla~tSSH~~tAErQFR~P~EyG~  151 (329)
T pfam07451        78 AGDLL-NQIIS--SSFAARTLGIP---FLGLYGACSTMMESLALAAMLVDGGFADYVLAATSSHFASAERQFRFPTEYGG  151 (329)
T ss_pred             ECHHH-HHHHH--HHHHHHHCCCC---EEEHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCHHHHHHCCCCHHCCC
T ss_conf             01244-32577--77889863998---12113566778999999999984665434134314452036654268221167


Q ss_pred             CC-CCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCH
Q ss_conf             24-43432544200112205765444531135532136776527830698667654455655232245145434320100
Q gi|254780489|r  152 DK-DTAIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIM  230 (325)
Q Consensus       152 d~-~~~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~  230 (325)
                      +| .++--==-||+|+||++..  +.+.|....+.         ++.+.|-..|...           |..    ..+..
T Consensus       152 QrpptAqWTVTGaGa~il~~~~--~~p~It~~TiG---------kVvD~Gi~Dp~nM-----------GaA----MAPAA  205 (329)
T pfam07451       152 QRPPTAQWTVTGAGAVLLGKEG--DGPRITSATIG---------KVVDYGIKDPNNM-----------GAA----MAPAA  205 (329)
T ss_pred             CCCCCCCEEEECEEEEEEECCC--CCCEEEEEEEE---------EEEECCCCCCCCC-----------HHH----HHHHH
T ss_conf             7998663788751899994389--98779898778---------8876588884302-----------555----64789


Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECC---CCCHHHHHHHHHCCCCHHHHH-H----HHH----HC--CCC---CCCHHHHH
Q ss_conf             3678988997401200122463056---541389999997197865700-2----185----40--933---00059999
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQ---ANSRIIQKVCEKIGLSKRIMV-N----SLK----DF--GNS---SSASIPLS  293 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq---~~~~~~~~~~~~lgi~~~~~~-~----~l~----~~--GN~---~sAsi~~~  293 (325)
                      ...|.+.+++.|.+++|.|.++.--   .+.+++..+.++-|++.++.+ +    +++    +.  |-.   .||.+...
T Consensus       206 ~dTI~~hf~D~g~~p~dYDlIvTGDLG~vG~~i~~~Ll~~~g~~i~~~~~DCG~~Iyd~~~Q~v~aGGSGcgCSAvV~~g  285 (329)
T pfam07451       206 ADTIEQHFQDTGRDPSDYDLIVTGDLGKVGREIAEDLLKEKGYDISENYQDCGLLIYDNEKQDVHAGGSGCGCSAVVLYG  285 (329)
T ss_pred             HHHHHHHHHHCCCCHHHCCEEEECCHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             99999999970999224447996644887899999999981988444317667686647877655787643368999999


Q ss_pred             -HHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf             -99999806789998999998615510
Q gi|254780489|r  294 -LSLENQRKPFQKGEKILTISCRRGND  319 (325)
Q Consensus       294 -L~~~~~~g~i~~Gd~vll~~~G~G~s  319 (325)
                       +-.-+++|++|   |||+++.|+=+|
T Consensus       286 ~il~~m~~g~~k---rvL~VaTGALlS  309 (329)
T pfam07451       286 YLLKKMKKGELK---RVLFVATGALLS  309 (329)
T ss_pred             HHHHHHHCCCCE---EEEEEECCHHCC
T ss_conf             989999658721---899997503138


No 106
>PRK06690 acetyl-CoA acetyltransferase; Provisional
Probab=99.17  E-value=4.3e-10  Score=85.85  Aligned_cols=93  Identities=15%  Similarity=0.096  Sum_probs=72.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887432211210023-863334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+..+++.+.++   .|++||-||++.+.+.  -...+..++-.-|++ .++++.|+..|.+++.|+..|.+.
T Consensus        21 ~~~~~~~L~~~~i~~l~~~---~~~~Id~vi~G~v~~~--g~n~aR~aaL~aGlp~~vp~~tVnr~C~SGl~Av~~aa~~   95 (361)
T PRK06690         21 KDYEVQQLAAPLLTFLSKG---MERAIDDVILGNVVGP--GGNVARLSALEAGLGLHIPGVTIDRQCGAGLEAIRTACHF   95 (361)
T ss_pred             CCCCHHHHHHHHHHHHHHC---CCCCCCEEEEEECCCC--CCHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf             8998899999999999727---9111685999956776--7509999999759998887588875315889999999999


Q ss_pred             HHCCC-CEEEEEEECCCCCC
Q ss_conf             74388-50588620122444
Q gi|254780489|r  129 INSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       129 i~~g~-~~vLVv~~e~~S~~  147 (325)
                      |++|. +-++..+.|.+|+.
T Consensus        96 I~~G~~dvviAGGvEsmS~~  115 (361)
T PRK06690         96 IQGGAGKCYIAGGVESTSTS  115 (361)
T ss_pred             HHCCCCCEEEECCCCHHCCC
T ss_conf             96799998998470140125


No 107
>PRK12404 stage V sporulation protein AD; Provisional
Probab=99.17  E-value=1e-09  Score=83.32  Aligned_cols=272  Identities=18%  Similarity=0.232  Sum_probs=157.8

Q ss_pred             CCCEEEEEEEEECCCCCCCHHHHHHHHCCC--HHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf             662099999973588613888999880999--768311147508899489887999999999998643013222344258
Q gi|254780489|r    3 KSSSCILGFGHAVPNQCIHNSIIERHLNLK--LGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTL   80 (325)
Q Consensus         3 ~~~~~I~g~g~~lP~~~i~n~~l~~~~~~~--~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii   80 (325)
                      .+..+|+++++..-+.- .+--+.+.|+.-  +.+.-+++         ++.--..|-.+|++.||++++++++|||+++
T Consensus        11 ~~~p~I~~~asvvGpkE-g~GPL~~~FD~i~~D~~~G~~s---------wEkAE~~m~~~A~~~al~Ka~l~~~dId~~~   80 (334)
T PRK12404         11 ENKPVIIATGVVGGPFE-AKGKIPEDFDTLHEDLWLGQDS---------YEKAHKKLFEEACSRATEKAKLRKDDIQFVL   80 (334)
T ss_pred             CCCCEEEEEEEEECCCC-CCCCCHHHCCEEECCCCCCCCC---------HHHHHHHHHHHHHHHHHHHCCCCHHHCEEEE
T ss_conf             79988999767877735-6688755387340364457243---------9999999999999999987499978864896


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCC---CCCC----CC-
Q ss_conf             8431002368874322112100238633342101231012567657887438-8505886201224---4446----22-
Q gi|254780489|r   81 LATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLS---RRIN----LE-  151 (325)
Q Consensus        81 ~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S---~~~d----~~-  151 (325)
                      .+--. .+..+  +++.++.|++|   -|.+=.+|+.+..+|.+|.-++.+| ++++|..++-.++   |.+.    |. 
T Consensus        81 aGDLl-nQ~i~--ssf~ar~l~iP---f~GlyGACST~~E~L~laa~~vd~g~A~~vla~tSSH~~tAErQFR~P~EyG~  154 (334)
T PRK12404         81 AGDLI-NQITP--TSFAARTLGTP---YLGLFGACSTSMEGLALGASIVNAKGAKYLLTGASSHNTAVEKQFRYPTEYGG  154 (334)
T ss_pred             ECHHH-HHHHH--HHHHHHHCCCC---EEEHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCHHHHHHCCCCHHCCC
T ss_conf             12244-32578--77889864998---01113566778999999999984665435023204452036654258221167


Q ss_pred             CC-CCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCH
Q ss_conf             24-43432544200112205765444531135532136776527830698667654455655232245145434320100
Q gi|254780489|r  152 DK-DTAIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIM  230 (325)
Q Consensus       152 d~-~~~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~  230 (325)
                      +| .++--==-||+|+||++..  +.+.|....+.         ++.+.|-.+|...           |..    ..+..
T Consensus       155 QrpptAqWTVTGaGa~il~~~~--~~p~It~~TiG---------kVvD~Gi~D~~nM-----------GaA----MAPAA  208 (334)
T PRK12404        155 QKPPTAQWTVTGAGAAILSKTG--HGPRVTSATIG---------RVVDMGLTDPFNM-----------GGA----MAPAA  208 (334)
T ss_pred             CCCCCCCEEEECEEEEEEECCC--CCCEEEEEEEE---------EEEECCCCCCCCC-----------HHH----HHHHH
T ss_conf             7998662788761899994389--99779898778---------8876588884302-----------555----54789


Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECC---CCCHHHHHHHHHCCCC--HHHHHH----HHHH---C--CCC---CCCHHHHH
Q ss_conf             3678988997401200122463056---5413899999971978--657002----1854---0--933---00059999
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQ---ANSRIIQKVCEKIGLS--KRIMVN----SLKD---F--GNS---SSASIPLS  293 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq---~~~~~~~~~~~~lgi~--~~~~~~----~l~~---~--GN~---~sAsi~~~  293 (325)
                      ...|.+.+++.|.+++|.|.++.--   .+..++..+.++-|++  ++++.+    ++++   .  |-.   .||.+...
T Consensus       209 ~dTI~~hf~D~g~~p~dYDlI~TGDLG~vG~~i~~~Ll~~~g~~i~~~~~~DCG~~Iy~~~Q~v~aGGSGcgCSA~V~~g  288 (334)
T PRK12404        209 VDTIEAHLRDRQIDASYYDLIVTGDLGHVGREIAYDLLHKHGTKVTSEQFQDCGLLIYREGQPVIAGASGPGCSATVVYG  288 (334)
T ss_pred             HHHHHHHHHHCCCCHHHCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf             99999999970999234457996643887899999999981988874553766746346898756887653368999999


Q ss_pred             -HHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf             -99999806789998999998615510
Q gi|254780489|r  294 -LSLENQRKPFQKGEKILTISCRRGND  319 (325)
Q Consensus       294 -L~~~~~~g~i~~Gd~vll~~~G~G~s  319 (325)
                       +-.-+++|+++   |||+++.|+=+|
T Consensus       289 ~il~~m~~g~~k---rvL~VaTGALlS  312 (334)
T PRK12404        289 HLLNRMKRGELK---KILVVATGALLS  312 (334)
T ss_pred             HHHHHHHCCCCE---EEEEEECCHHCC
T ss_conf             999999648730---899997503138


No 108
>PRK06066 acetyl-CoA acetyltransferase; Provisional
Probab=99.16  E-value=1.7e-09  Score=82.00  Aligned_cols=240  Identities=15%  Similarity=0.032  Sum_probs=133.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCC-CC-CCCCEEEEEEEEECCCCC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             9887999999999998643013-22-234425884310023688-74-32211210023863334210123101256765
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANI-KK-DSISLTLLATSTPDHLLP-PS-SPLITHRLGLMQSGAIDLTGACAGFLYALVMA  125 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~-~~-~dId~ii~~s~t~d~~~P-~~-a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A  125 (325)
                      ++-+..+|+.+|+++||++||+ +| .|||.++.+.  +++... .. .....+.+|....+   +...|.++..++..|
T Consensus        19 ~d~s~~eL~~eA~~~Al~DAG~~~~~~did~~~~~~--~~~~~g~~~~~~~~~~~lG~~~~p---~~~v~~~G~~al~~A   93 (375)
T PRK06066         19 PDLSFREMMFEAAVRAYEDAGGINPRRDVDAFISCQ--EDFWEGIAISDEFAPDPIGGAMRP---TMTVAGDGLQGLAHA   93 (375)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCHHHEEEEEECC--CCCCCCHHHHHHHHHHHHCCCCCC---EEEEECHHHHHHHHH
T ss_conf             998999999999999999679998665600676613--333440557877658762466785---488527799999999


Q ss_pred             HHHHHCC-CCEEEEEEECCCCCCC----------CC--C-----------------------------------------
Q ss_conf             7887438-8505886201224444----------62--2-----------------------------------------
Q gi|254780489|r  126 DSYINSH-QKPVLIIAANLLSRRI----------NL--E-----------------------------------------  151 (325)
Q Consensus       126 ~~~i~~g-~~~vLVv~~e~~S~~~----------d~--~-----------------------------------------  151 (325)
                      ...|++| .+.+||++.+..|...          |+  .                                         
T Consensus        94 ~~aIaSG~~dvvlv~g~~k~s~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~al~A~rym~~yG~t~E~lA~vavk~r~~A  173 (375)
T PRK06066         94 YMHINSGLADVVVVESHAKPSDILTFPDVVKFAMDPIYLRPLGPPNPHFLAGLEAVKFMARRGVTREDLALVVEKNKKAG  173 (375)
T ss_pred             HHHHHCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             99997198888999704466776651114440468550023687659999999999999886979999999999999988


Q ss_pred             --CC----------------------CC---CCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCC
Q ss_conf             --24----------------------43---4325442001122057654445311355321367765278306986676
Q gi|254780489|r  152 --DK----------------------DT---AIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSP  204 (325)
Q Consensus       152 --d~----------------------~~---~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~  204 (325)
                        ++                      ..   .-..+|||+|+||..++...+..--...+...+...+           .
T Consensus       174 ~~NP~A~~~~~~t~edvl~s~~ia~PL~~~dc~~~sDGAaA~Vv~s~~~A~~~~~~pv~i~g~g~~~~-----------~  242 (375)
T PRK06066        174 LKNPRASYASNVSLDDVLSSEYVVYPLTELDIAPFVDGAIVVVLASEEVARKLTDTPVWIKGIGWATD-----------T  242 (375)
T ss_pred             HHCCHHHCCCCCCHHHHCCCCCEECCCCCCCCCCCCCCEEEEEEECHHHHHHCCCCCEEEEEEEEECC-----------C
T ss_conf             53984030699999998079765057530022667684289999358999756899889999998526-----------8


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCC--CCCCEEEECCCCCHHHHHHHHHCCCCHHH--------
Q ss_conf             54455655232245145434320100367898899740120--01224630565413899999971978657--------
Q gi|254780489|r  205 AGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQP--QDINRFIPHQANSRIIQKVCEKIGLSKRI--------  274 (325)
Q Consensus       205 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~--~did~~i~Hq~~~~~~~~~~~~lgi~~~~--------  274 (325)
                      ......+..            ......+..+++.+.+|++.  +|||.+-.|-.-....-...+.||+..+-        
T Consensus       243 ~~~~~~~~~------------~~~~~~~a~~~Ay~~Agi~~p~~DiDv~elyD~ft~~~l~~lE~lG~~geg~~~~~~G~  310 (375)
T PRK06066        243 SNLETADLG------------KAMYMRKAADMAYKMAGIASPAKEVDFAFVDDRYSYKELQHIEALGLAGKAAKDLREGY  310 (375)
T ss_pred             CCCCCCCCC------------CCHHHHHHHHHHHHHCCCCCCHHHCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHCCC
T ss_conf             776622345------------33689999999999807999866661557516661999999998489842889997799


Q ss_pred             ------HHHH----HHHCCCCCCCHHHHHHHHHHHHCCCC------CCCEEEEEEECCC
Q ss_conf             ------0021----85409330005999999999806789------9989999986155
Q gi|254780489|r  275 ------MVNS----LKDFGNSSSASIPLSLSLENQRKPFQ------KGEKILTISCRRG  317 (325)
Q Consensus       275 ------~~~~----l~~~GN~~sAsi~~~L~~~~~~g~i~------~Gd~vll~~~G~G  317 (325)
                            ++.|    +--+||...++=...+.++..+=+=+      +|-++-+...+.|
T Consensus       311 ~~~~G~~PvNtsGG~ls~Ghp~ga~G~~~~~E~~~QLrg~ag~RQV~gA~~gl~~~~g~  369 (375)
T PRK06066        311 FEPGGELPVNPSGGHLAKGVPLEASGLSLLLDAVEYLRQGGVERAVVASWRGIPTFTGS  369 (375)
T ss_pred             CCCCCCCCEECCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCE
T ss_conf             56799820608982442898575069999999999974353043216788701337643


No 109
>PRK08304 stage V sporulation protein AD; Validated
Probab=99.16  E-value=1.1e-09  Score=83.14  Aligned_cols=274  Identities=20%  Similarity=0.263  Sum_probs=158.5

Q ss_pred             CCCEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf             66209999997358861388899988099976831114750889948988799999999999864301322234425884
Q gi|254780489|r    3 KSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLA   82 (325)
Q Consensus         3 ~~~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~   82 (325)
                      .+..+|.+.++.+-+.- .+--+.+.|+.-.+.  ...|  +..   ++.--+.|-.+|++.||++++++++|||+++.+
T Consensus        13 ~~~p~I~s~~svvGpkE-geGPL~~~FD~i~~D--~~~g--~~s---wEkAE~~m~~~A~~~al~Ka~l~~~dId~~~aG   84 (336)
T PRK08304         13 ENPPYIISTGTIVGPKE-GEGPLGKYFDKIYDD--DYCG--EKS---WEKAESKLMSDAIQQALQKANLKESDIDYLLAG   84 (336)
T ss_pred             CCCCEEEEEEEEECCCC-CCCCCHHHCCEEECC--CCCC--CCC---HHHHHHHHHHHHHHHHHHHCCCCHHHCEEEEEC
T ss_conf             79988999657866746-668774427735115--4457--142---999999999999999999749997787389722


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCC---CCCC----CC-CC
Q ss_conf             31002368874322112100238633342101231012567657887438-8505886201224---4446----22-24
Q gi|254780489|r   83 TSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLS---RRIN----LE-DK  153 (325)
Q Consensus        83 s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S---~~~d----~~-d~  153 (325)
                      --. .+..  .+++.++.|++|   -|.+=.+|+.+..+|.+|.-++.+| ++++|..++-.++   |.+.    |. +|
T Consensus        85 DLl-nQ~i--~s~f~ar~l~IP---f~GlyGACST~~Esl~laa~~vdgg~A~~vla~tSSH~~tAErQFR~P~EyG~Qr  158 (336)
T PRK08304         85 DLL-NQTI--SANFVARELGIP---FLGLYGACSTMMESLALASMLIDGGFADRVLAATSSHFATAERQFRFPTEYGGQR  158 (336)
T ss_pred             HHH-HHHH--HHHHHHHHCCCC---EEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHEECCCCCHHHHHHCCCCHHCCCCC
T ss_conf             245-5467--766779865998---0102567788999999999998266364531002334203665515803206779


Q ss_pred             -CCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHH
Q ss_conf             -4343254420011220576544453113553213677652783069866765445565523224514543432010036
Q gi|254780489|r  154 -DTAIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQ  232 (325)
Q Consensus       154 -~~~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~  232 (325)
                       .++--==-||+|+||++.+.  .+.|....+.         ++.+.|-.+|...           |..    ..+....
T Consensus       159 p~tAqwTVTGaGa~il~~~~~--~p~It~~TiG---------kVvD~Gi~D~~nM-----------GaA----MAPAA~d  212 (336)
T PRK08304        159 PPTAQWTVTGAGAVLLSKEGS--GPKITYATIG---------KVIDYGIKDPLDM-----------GAA----MAPAAAD  212 (336)
T ss_pred             CCCCCEEEECEEEEEEECCCC--CCEEEEEEEE---------EEEECCCCCCCCC-----------HHH----HHHHHHH
T ss_conf             986517887517999813899--9779898678---------8876488884303-----------555----5378999


Q ss_pred             HHHHHHHHHCCCCCCCCEEEECC---CCCHHHHHHHHHCCCCHHHHHH-----HHH----HC--CC---CCCCHHHHH-H
Q ss_conf             78988997401200122463056---5413899999971978657002-----185----40--93---300059999-9
Q gi|254780489|r  233 SAKQSLRKSDLQPQDINRFIPHQ---ANSRIIQKVCEKIGLSKRIMVN-----SLK----DF--GN---SSSASIPLS-L  294 (325)
Q Consensus       233 ~i~~~l~~~gl~~~did~~i~Hq---~~~~~~~~~~~~lgi~~~~~~~-----~l~----~~--GN---~~sAsi~~~-L  294 (325)
                      .|.+.+++.|.+++|.|.++.--   .+..+++.+.++-|++.+..+.     +++    +.  |-   -.||.+... +
T Consensus       213 TI~~hf~Dtg~~p~dYDlIvTGDLg~vG~~i~~~Ll~e~g~~i~~~~~DCG~~iyd~e~Qdv~aGGSGcgCSAvV~~g~i  292 (336)
T PRK08304        213 TIKQHFEDTGRTPEDYDLIVTGDLGAVGREIAKELLKEEGYDISDNYNDCGVMIYDSEQQDVFAGGSGCACSAVVTYGYL  292 (336)
T ss_pred             HHHHHHHHHCCCHHHCCEEEECCHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99999998099900234899664588789999999998097855522756768763777765688765444789989998


Q ss_pred             HHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf             9999806789998999998615510
Q gi|254780489|r  295 SLENQRKPFQKGEKILTISCRRGND  319 (325)
Q Consensus       295 ~~~~~~g~i~~Gd~vll~~~G~G~s  319 (325)
                      -.-+++|+++   |||+++.|+=+|
T Consensus       293 l~~m~~g~~k---rvL~vaTGALlS  314 (336)
T PRK08304        293 YKELQKGKLK---RVLVVATGALLS  314 (336)
T ss_pred             HHHHHCCCCC---EEEEEECCHHCC
T ss_conf             9998648731---799997403138


No 110
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.09  E-value=2.3e-09  Score=81.07  Aligned_cols=223  Identities=18%  Similarity=0.198  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCE----EEEEEEEECCCCCC-------------------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999986430132223442----58843100236887-------------------432211210023863334210
Q gi|254780489|r   57 IAIQAGDIALRNANIKKDSISL----TLLATSTPDHLLPP-------------------SSPLITHRLGLMQSGAIDLTG  113 (325)
Q Consensus        57 la~~Aa~~aL~~a~~~~~dId~----ii~~s~t~d~~~P~-------------------~a~~v~~~Lg~~~~~~~di~~  113 (325)
                      |-.+-+-+|||+||++|+.+.-    |..+....+|....                   .+.+|...|+++. +++.|..
T Consensus        94 llLe~aw~AlEdAG~~~~~l~g~~tgV~~g~~~~~y~~~~~~~~~~~~~~~~~g~~~~~~a~Risy~l~l~G-Ps~~vdt  172 (1061)
T COG3321          94 LLLEVAWEALEDAGIYPDSLRGSATGVFAGASVADYLLLLLADDEAEPEYAITGNSSSVAAGRISYVLGLSG-PSVTVDT  172 (1061)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHCCCHHEEECCC-CCCCCCC
T ss_conf             999999999997599922256742489965656664442322212355221025422021010122043457-8542223


Q ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEEEEECCC----------CCC--CCCC-------CCCCCCCCCCCEEEEEECCCCCC
Q ss_conf             1231012567657887438850588620122----------444--4622-------24434325442001122057654
Q gi|254780489|r  114 ACAGFLYALVMADSYINSHQKPVLIIAANLL----------SRR--INLE-------DKDTAIIFGDAAGAVVLAPSPLK  174 (325)
Q Consensus       114 ~C~g~l~aL~~A~~~i~~g~~~vLVv~~e~~----------S~~--~d~~-------d~~~~~lfGDgA~A~il~~~~~~  174 (325)
                      +|++.+.|+.+|...|+.|.....++++...          |+.  +.++       .....+..|.|+++++|.+-...
T Consensus       173 aCSSsLvAvhlA~~sL~~Ge~d~alaGgv~l~~~p~~~~~~~~~g~ls~~g~c~~fd~~adG~v~geG~g~vvLKrl~~A  252 (1061)
T COG3321         173 ACSSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLSPDGRCKAFDADADGYVRGEGAGVVVLKRLSDA  252 (1061)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEHHHH
T ss_conf             67678999999999875487201320222103586044434430355866775787555786687214689986258878


Q ss_pred             --CCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             --445311355321367765278306986676544556552322451454343201003678988997401200122463
Q gi|254780489|r  175 --DKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFI  252 (325)
Q Consensus       175 --~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i  252 (325)
                        ++..|.++.-.|.-.              ..+...   .+...+        ......+++++|+++++.+++|+|+=
T Consensus       253 ~~dgd~IyavI~gsavn--------------~dG~~~---gltaP~--------~~aQ~~v~~~al~~a~i~p~tv~yvE  307 (1061)
T COG3321         253 ERDGDRIYAVIRGSAVN--------------QDGRSN---GLTAPN--------LEAQADVIREALADAGIDPATVQYVE  307 (1061)
T ss_pred             HHCCCEEEEEEEEEEEE--------------CCCCCC---CCCCCC--------HHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             75799179999502550--------------577656---744788--------88999999999985599903351676


Q ss_pred             ECCCCCHHH-----HHHHHHCCCC-HHHHH---HHHHHCCCCCCCHHHHHHH---HHHHHCCCCC
Q ss_conf             056541389-----9999971978-65700---2185409330005999999---9998067899
Q gi|254780489|r  253 PHQANSRII-----QKVCEKIGLS-KRIMV---NSLKDFGNSSSASIPLSLS---LENQRKPFQK  305 (325)
Q Consensus       253 ~Hq~~~~~~-----~~~~~~lgi~-~~~~~---~~l~~~GN~~sAsi~~~L~---~~~~~g~i~~  305 (325)
                      .|.-+..+-     ..+.+.++-. ++...   +.-.+.||+.+|.=...|-   .+++.+.+.|
T Consensus       308 aHgTGT~lGDpiE~~aL~~v~~~~~~~~~c~iGSvKsNiGH~~~AaGiagliK~~Lal~~~~ip~  372 (1061)
T COG3321         308 AHGTGTPLGDPIEANALGAVYGEGAPAQPCAIGSVKSNIGHLEAAAGIAGLIKTALALKHGYIPP  372 (1061)
T ss_pred             ECCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             11477656478999889998603576773001211102367788879999999999861278798


No 111
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.02  E-value=2.9e-08  Score=73.93  Aligned_cols=266  Identities=16%  Similarity=0.105  Sum_probs=141.0

Q ss_pred             CCCCCEEEEEEEEECCCCCCCHHHHHHHH--CCC-----HHHEEEC-----CCCC-EEEEECC-----CCCHHHHHHHHH
Q ss_conf             96662099999973588613888999880--999-----7683111-----4750-8899489-----887999999999
Q gi|254780489|r    1 MIKSSSCILGFGHAVPNQCIHNSIIERHL--NLK-----LGVIEQK-----TGIK-YRYWAEK-----HETLTDIAIQAG   62 (325)
Q Consensus         1 M~~~~~~I~g~g~~lP~~~i~n~~l~~~~--~~~-----~~~i~~~-----tGI~-~R~~~~~-----~e~~~~la~~Aa   62 (325)
                      |.++.|.|+|+|..-|-- .+-+++-+.+  +.+     .+.....     -.+. ..++...     -.....|++.|+
T Consensus         3 M~~rRVVITGiG~VsplG-~g~~~~w~aL~~G~~~~~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~r~m~~~~~~a~~AA   81 (397)
T PRK06519          3 MQPNDVVITGIGLVSSLG-EGLDAHWAALAAARVQPNVDTETFAPYPVHPLPEIDWDLQIPKRGDQRQMEAWQRLGTYAA   81 (397)
T ss_pred             CCCCCEEEECHHHCCCCC-CCHHHHHHHHHCCCCCCCCCHHHCCCCCCEECCCCCHHHCCCCHHHHHCCCHHHHHHHHHH
T ss_conf             899978990804406882-8999999998779992542743258754216788883430565155532579999999999


Q ss_pred             HHHHHHCCCCCC-----CCCEEEEEEEE-----------------ECC-----------CCCC---------CCCCCCCC
Q ss_conf             998643013222-----34425884310-----------------023-----------6887---------43221121
Q gi|254780489|r   63 DIALRNANIKKD-----SISLTLLATST-----------------PDH-----------LLPP---------SSPLITHR  100 (325)
Q Consensus        63 ~~aL~~a~~~~~-----dId~ii~~s~t-----------------~d~-----------~~P~---------~a~~v~~~  100 (325)
                      ++||++||++++     .+++++..+..                 .++           ..|.         .+..|.-+
T Consensus        82 ~~Al~dAGl~~~~~~~~~~gv~vgsg~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~P~~~~~~l~n~~a~~isi~  161 (397)
T PRK06519         82 GLALDDAGIKGNEEICSTMDMIVAAGGGERDIAVDTAILNEARKGNDRGGLLNERLMTELRPTLFLAQLSNLLAGNISIV  161 (397)
T ss_pred             HHHHHHCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999679998700104656799953666530442221024443345620333214566782688988776289999998


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-EEEEEEECCCC---------------C-CCCC------CCCCCCC
Q ss_conf             0023863334210123101256765788743885-05886201224---------------4-4462------2244343
Q gi|254780489|r  101 LGLMQSGAIDLTGACAGFLYALVMADSYINSHQK-PVLIIAANLLS---------------R-RINL------EDKDTAI  157 (325)
Q Consensus       101 Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g~~-~vLVv~~e~~S---------------~-~~d~------~d~~~~~  157 (325)
                      +|++. +++-+..+|+++.+||-.|.++|+.|.. .+++-++|...               + ..++      .|| ..|
T Consensus       162 ~g~~G-p~~tv~tACASg~~AIg~A~~~Ir~G~aDv~iaGGae~~~~p~~~~~~~~~~~~s~~~~~P~~a~~~~dR-~Gf  239 (397)
T PRK06519        162 HKVTG-SSRTFMGEEGAGVSAIRIALARIASGQSTHALVGGAYNAERKDMLLLYELGGLLLKDGWAPVWSRKGSAG-GGF  239 (397)
T ss_pred             HCCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCE
T ss_conf             37887-6654026038899999999999977998889986201333728999999733434799992224897567-973


Q ss_pred             CCCCCEEEEEECCCCCCCCC--CCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Q ss_conf             25442001122057654445--3113553213677652783069866765445565523224514543432010036789
Q gi|254780489|r  158 IFGDAAGAVVLAPSPLKDKS--GILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAK  235 (325)
Q Consensus       158 lfGDgA~A~il~~~~~~~~~--~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~  235 (325)
                      .+|+||+.+||+..+.....  .|+.- +..++.           ...+           ..++         .+...++
T Consensus       240 VlGEGAa~LVLE~~ehA~aRGA~IyaE-i~G~g~-----------~~~~-----------~~~g---------~~~~~~~  287 (397)
T PRK06519        240 ILGSGGAFLVLESREHAEARGARPYAR-LSGVVS-----------DRAR-----------RSPG---------DVEASLE  287 (397)
T ss_pred             EECCCEEEEEECCHHHHHHCCCEEEEE-EEEEEC-----------CCCC-----------CCCC---------HHHHHHH
T ss_conf             541663899973587898589926899-976405-----------8889-----------9980---------8999999


Q ss_pred             HHHHHHCCCCCCCCEEEECCCCCHHHHH-----HHHHCCCCHHHHHHHHHHCCCCCCCHHHHH---HHHHHHHCCCCC
Q ss_conf             8899740120012246305654138999-----999719786570021854093300059999---999998067899
Q gi|254780489|r  236 QSLRKSDLQPQDINRFIPHQANSRIIQK-----VCEKIGLSKRIMVNSLKDFGNSSSASIPLS---LSLENQRKPFQK  305 (325)
Q Consensus       236 ~~l~~~gl~~~did~~i~Hq~~~~~~~~-----~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~---L~~~~~~g~i~~  305 (325)
                      .+++++++.++++ +++.|-.+..-.+.     +.+..++|.   -.+=.-+||+-.|+=-+-   -..+++.|.|.|
T Consensus       288 ~al~~ag~~~~~~-~~~~~~tgt~~~d~~e~~al~~~~~~pV---SStKsm~GH~lGAAGAiEav~~~Lal~~g~iPP  361 (397)
T PRK06519        288 RLWSAAGGLAAPT-AVISGATGAHPATAEERAALEAHPGAPV---RGTGTLFGHLMEAQFPLGLALAALSVSRGALFP  361 (397)
T ss_pred             HHHHHCCCCCCCE-EEECCCCCCCCCHHHHHHHHHHCCCCCE---ECCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             9998679997574-8984898888427999999864679967---554476510078999999999999983197189


No 112
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases; InterPro: IPR002155   Two different types of thiolase , ,  are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis.   In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes.   There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction.   Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases ..
Probab=98.94  E-value=1.7e-09  Score=81.95  Aligned_cols=98  Identities=17%  Similarity=0.159  Sum_probs=80.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHC-CCCCCCCCEEEEEEEEECCCC-CCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             98879999999999986430-132223442588431002368-87432211210023-8633342101231012567657
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNA-NIKKDSISLTLLATSTPDHLL-PPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMAD  126 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a-~~~~~dId~ii~~s~t~d~~~-P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~  126 (325)
                      .+.++.||+..+.+++|+|. +++|++||.||++.+.+.--. +..+..++=.-|++ ++++|.|+..|.|+++|+..|.
T Consensus        20 ~~~~a~dL~~~~i~~ll~r~p~l~~~~iD~vi~G~V~~~g~~g~~~aR~aaL~AGl~~~vpa~tvnr~CaSGl~Av~~aa   99 (447)
T TIGR01930        20 KDLSAEDLGAAVIKELLERNPGLDPELIDDVILGNVLQAGEQGQNIARQAALAAGLPESVPALTVNRQCASGLQAVALAA   99 (447)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHH
T ss_conf             78787999999999999853688846728177610005776441489999987068987873442023242799999999


Q ss_pred             HHHHCCCCEEEE-EEECCCCCC
Q ss_conf             887438850588-620122444
Q gi|254780489|r  127 SYINSHQKPVLI-IAANLLSRR  147 (325)
Q Consensus       127 ~~i~~g~~~vLV-v~~e~~S~~  147 (325)
                      +.|++|...+.| -+.|.+|+.
T Consensus       100 ~~I~~G~~d~~~AGGvEsMS~~  121 (447)
T TIGR01930       100 QKIRAGEADVVVAGGVESMSRV  121 (447)
T ss_pred             HHHHCCCCCEEEEECCCCCCCC
T ss_conf             8853485016786074544667


No 113
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.89  E-value=2.7e-08  Score=74.08  Aligned_cols=212  Identities=21%  Similarity=0.265  Sum_probs=122.4

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCC-CCCC--E-EEEEEEEEC----------------------CC----CC-CCCCCCCCC
Q ss_conf             8799999999999864301322-2344--2-588431002----------------------36----88-743221121
Q gi|254780489|r   52 ETLTDIAIQAGDIALRNANIKK-DSIS--L-TLLATSTPD----------------------HL----LP-PSSPLITHR  100 (325)
Q Consensus        52 e~~~~la~~Aa~~aL~~a~~~~-~dId--~-ii~~s~t~d----------------------~~----~P-~~a~~v~~~  100 (325)
                      +....+++.|+++||++++++. .+.+  . ++.+|....                      +.    .| ..+..++..
T Consensus        69 d~~~~~a~~Aa~~Al~dAgl~~~~~~~~r~gv~iGsg~gg~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~vs~~  148 (412)
T COG0304          69 DRFSQLAVVAAVEALEDAGLDNELNVDMRVGVAIGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIV  148 (412)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHH
T ss_conf             58999999999999997599843356862799993167784125667888875278667682056665351478999998


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-CEEEEEEECC-C--------------CCC-------CCCCCC-CCC
Q ss_conf             002386333421012310125676578874388-5058862012-2--------------444-------462224-434
Q gi|254780489|r  101 LGLMQSGAIDLTGACAGFLYALVMADSYINSHQ-KPVLIIAANL-L--------------SRR-------INLEDK-DTA  156 (325)
Q Consensus       101 Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g~-~~vLVv~~e~-~--------------S~~-------~d~~d~-~~~  156 (325)
                      +|++. +.+.+..+|+++.+++..|.++|+.|. +.+++.++|. .              |..       ..|.|+ ...
T Consensus       149 ~g~~G-~~~t~~tACatg~~aIg~A~~~I~~G~ad~~iaGG~e~~i~~~~i~gF~a~~Alst~nd~p~~asrPfd~~RdG  227 (412)
T COG0304         149 FGLKG-PNYTPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRALSTRNDDPEKASRPFDKNRDG  227 (412)
T ss_pred             HCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             58778-76780666776888999999999739999899846533158989999998787567889953358888888997


Q ss_pred             CCCCCCEEEEEECCCCCCCCC--CCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Q ss_conf             325442001122057654445--311355321367765278306986676544556552322451454343201003678
Q gi|254780489|r  157 IIFGDAAGAVVLAPSPLKDKS--GILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSA  234 (325)
Q Consensus       157 ~lfGDgA~A~il~~~~~~~~~--~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i  234 (325)
                      |++|.||+.+||+..+.....  .|. .++..++...|.+.+..+   .|             +|        .-..+++
T Consensus       228 FV~gEGag~lVLE~~ehA~aRGA~Iy-aei~G~g~~~Da~h~t~P---~p-------------~g--------~Ga~~am  282 (412)
T COG0304         228 FVIGEGAGALVLEELEHALARGAKIY-AEIVGYGTTSDAYHITAP---AP-------------DG--------EGAIRAM  282 (412)
T ss_pred             EEEECCEEEEEECCHHHHHHCCCCEE-EEEEEEEECCCCCCCCCC---CC-------------CC--------CHHHHHH
T ss_conf             78854045788637624866899658-999877731440136789---97-------------87--------5699999


Q ss_pred             HHHHHHHCCCCCCCCEEEECCCCCHHHH-----HHHHHCCCCHHHHH--HHHHHCCCCCCCH
Q ss_conf             9889974012001224630565413899-----99997197865700--2185409330005
Q gi|254780489|r  235 KQSLRKSDLQPQDINRFIPHQANSRIIQ-----KVCEKIGLSKRIMV--NSLKDFGNSSSAS  289 (325)
Q Consensus       235 ~~~l~~~gl~~~did~~i~Hq~~~~~~~-----~~~~~lgi~~~~~~--~~l~~~GN~~sAs  289 (325)
                      +.+|+++|++++||||+-.|--+-..-+     ++.+.++=-..+++  .+-.-+||+-.|+
T Consensus       283 ~~AL~~Agl~~~~idYinaHgTsT~~nD~~E~~Ai~~vfg~~~~~~~vsstKs~tGH~lGAa  344 (412)
T COG0304         283 RAALADAGLTPEDIDYINAHGTSTPANDKAESLAIKRVFGEHAKSLPVSSTKSLTGHTLGAA  344 (412)
T ss_pred             HHHHHHCCCCHHHCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHH
T ss_conf             99999849997679989478766877659999999998422566753550440104376567


No 114
>pfam00108 Thiolase_N Thiolase, N-terminal domain. Thiolase is reported to be structurally related to beta-ketoacyl synthase (pfam00109), and also chalcone synthase.
Probab=98.89  E-value=3.4e-09  Score=80.00  Aligned_cols=98  Identities=16%  Similarity=0.177  Sum_probs=83.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9887999999999998643013222344258843100236887432211210023-863334210123101256765788
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .+.++.+|+..+++.+|++.+++|++||.||++.+.+...-+..+..+.-..|++ .++++.|+..|.++++|+..|...
T Consensus        22 ~~~~~~~L~~~~~~~~l~r~~~~p~~Id~vi~G~~~~~g~~~n~aR~~~l~aGlp~~vp~~tvnr~C~Sgl~Ai~~Aa~~  101 (264)
T pfam00108        22 KDLSAVDLGAIAIKAALERAGVKPEDVDEVIMGNVLQAGEGQNPARQAALKAGIPDSVPAVTINKVCGSGLKAVALAAQA  101 (264)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf             88988999999999999985999688356888436656776629999999769998886689823201799999999999


Q ss_pred             HHCCC-CEEEEEEECCCCCC
Q ss_conf             74388-50588620122444
Q gi|254780489|r  129 INSHQ-KPVLIIAANLLSRR  147 (325)
Q Consensus       129 i~~g~-~~vLVv~~e~~S~~  147 (325)
                      |++|. .-+|+.+.|.+|+.
T Consensus       102 I~~G~~dv~iagGvEsmS~~  121 (264)
T pfam00108       102 IRAGDADIVVAGGVESMSNA  121 (264)
T ss_pred             HHCCCCCEEEEECCCCCCCC
T ss_conf             83798766787221356545


No 115
>PRK08257 acetyl-CoA acetyltransferase; Validated
Probab=98.77  E-value=3.4e-07  Score=66.86  Aligned_cols=94  Identities=16%  Similarity=0.062  Sum_probs=70.3

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCC-CCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             8879999999999986430132-223442588431002368874322112100238633342101231012567657887
Q gi|254780489|r   51 HETLTDIAIQAGDIALRNANIK-KDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYI  129 (325)
Q Consensus        51 ~e~~~~la~~Aa~~aL~~a~~~-~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i  129 (325)
                      ..++.+|..+|++.|++++|.+ .+.||.|.+.-... +..+.....|+++||+.+..++--..|-.+--.-+..+...|
T Consensus        26 ~~ePl~Lm~~A~~~A~~DaG~~l~~~IDsI~VVr~~s-w~y~np~~~lA~rLG~~pa~~~~t~~GGn~PQ~LVneaa~rI  104 (502)
T PRK08257         26 GLEPVDLMAAAARAAAADAGADLLEAIDSVAVVNQLS-WRYRNPPGLLAERLGADPARTVYGPVGGNSPQRLVNEAALRI  104 (502)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCHHHHCCEEEEECCCC-CCCCCHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             4799999999999999860820587597898513225-647998999999739997757983699836899999999999


Q ss_pred             HCC-CCEEEEEEECCCC
Q ss_conf             438-8505886201224
Q gi|254780489|r  130 NSH-QKPVLIIAANLLS  145 (325)
Q Consensus       130 ~~g-~~~vLVv~~e~~S  145 (325)
                      ..| .+-+||+++|..+
T Consensus       105 a~Ge~~~aLI~GgEA~~  121 (502)
T PRK08257        105 ARGEADVVLVAGAEAQS  121 (502)
T ss_pred             HCCCCCEEEEECHHHHH
T ss_conf             76885479997440699


No 116
>KOG1390 consensus
Probab=98.73  E-value=1.9e-07  Score=68.53  Aligned_cols=259  Identities=18%  Similarity=0.175  Sum_probs=139.5

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCC--CC-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             8879999999999986430132223442588431002368874322112100--23-86333421012310125676578
Q gi|254780489|r   51 HETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLG--LM-QSGAIDLTGACAGFLYALVMADS  127 (325)
Q Consensus        51 ~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg--~~-~~~~~di~~~C~g~l~aL~~A~~  127 (325)
                      .-+..+|+.-|++.||+|++++|+|++-+|++.+.+-.+--+.+.  |..||  ++ ...|..+|..|++++-|+-++.+
T Consensus        27 sl~A~~Lgsvaikaalera~~~~~~v~eVi~GnVl~AnlGQapaR--QaalgAGlp~sv~~tTvNkvCaSgmKAv~laaQ  104 (396)
T KOG1390          27 SLTATELGSVAIKAALERAVVPPSDVAEVIFGNVLSANLGQAPAR--QAALGAGLPYSVPATTVNKVCASGMKAVILAAQ  104 (396)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHH--HHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHH
T ss_conf             576256778999999985379878845554103012666766677--777626998521467623666656899999988


Q ss_pred             HHHCCCCEE-EEEEECCCCCCC-CCCCCCC--------------------------------------------------
Q ss_conf             874388505-886201224444-6222443--------------------------------------------------
Q gi|254780489|r  128 YINSHQKPV-LIIAANLLSRRI-NLEDKDT--------------------------------------------------  155 (325)
Q Consensus       128 ~i~~g~~~v-LVv~~e~~S~~~-d~~d~~~--------------------------------------------------  155 (325)
                      -|..|...+ +.-+.|.||..- -+..|..                                                  
T Consensus       105 sI~~G~~divVaGGmEsMS~vP~~~~~R~g~~~G~~~l~Dgi~~DGL~D~y~~~~MG~~aE~~ak~~~ItRe~QD~yAI~  184 (396)
T KOG1390         105 SIQTGHADIVVAGGMESMSNVPYLYVARGGVKYGGVQLVDGIVKDGLTDAYDKCHMGICAENTAKKYQITREEQDAYAIE  184 (396)
T ss_pred             HHHCCCCCEEEECCCCHHCCCCCHHHHCCCCCCCCEEEEECHHHCCHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             98338765798625020013852313315767588044430122346777606775305866477747767652568888


Q ss_pred             ----------CCCCCCCEE---------EEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCC---CCCCCCCCC
Q ss_conf             ----------432544200---------1122057654445311355321367765278306986676---544556552
Q gi|254780489|r  156 ----------AIIFGDAAG---------AVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSP---AGTNTHDFY  213 (325)
Q Consensus       156 ----------~~lfGDgA~---------A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~  213 (325)
                                .-.|+.--.         -+++..++...  ......-.   ..........+++-.+   .........
T Consensus       185 Sy~r~~~Aq~~g~f~~EIVPV~V~~~rg~~~v~~DEe~~--k~~~~~~~---~~l~~vF~~~ggTVTaaNAS~lnDGAAA  259 (396)
T KOG1390         185 SYKRSENAQKAGKFDKEIVPVEVKTKRGETVVKKDEEPK--KGSNIEKL---SKLRPVFKEDGGTVTAANASTLNDGAAA  259 (396)
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEEECCCCCEEECCCHHHH--CCCCHHHH---CCCCCEEECCCCEECCCCCCCCCCCCEE
T ss_conf             678778888607788724668983277757863440120--13225553---0045336427975624534665766003


Q ss_pred             CCCCCCHHHHHHHCCCH--------------------HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHH
Q ss_conf             32245145434320100--------------------3678988997401200122463056541389999997197865
Q gi|254780489|r  214 MRITNGADIFYNAVKIM--------------------AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKR  273 (325)
Q Consensus       214 ~~~~~g~~v~~~~~~~~--------------------~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~  273 (325)
                      ...+-+..+.+...+.+                    .-.+..+|+++|++.+|||+|=+..+=.-.--+..+.|+++++
T Consensus       260 vvL~s~e~~~~~glkPLArIv~~~dAa~~P~df~iaP~laipk~lk~aG~~~sdVd~~EiNEAFs~v~lA~iK~LgldP~  339 (396)
T KOG1390         260 VVLMSGEAAKELGLKPLARIVAWGDAATEPIDFTIAPALAIPKALKKAGLEQSDVDYWEINEAFSVVVLANIKKLGLDPS  339 (396)
T ss_pred             EEEECHHHHHHCCCCHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             67713645867698267877503541248143045657777899987285666525876644666777777887378876


Q ss_pred             HHHHHH--HHCCC---CCCCHHHHHHHHHHHH--CCCCCCCEEEEEEECCCCCC
Q ss_conf             700218--54093---3000599999999980--67899989999986155102
Q gi|254780489|r  274 IMVNSL--KDFGN---SSSASIPLSLSLENQR--KPFQKGEKILTISCRRGNDR  320 (325)
Q Consensus       274 ~~~~~l--~~~GN---~~sAsi~~~L~~~~~~--g~i~~Gd~vll~~~G~G~s~  320 (325)
                      |+-.+-  --.||   ++.|.+...|.+.+++  |++  |  |.-+.-|.|..+
T Consensus       340 kVNv~GGAValGHPlG~SGaRi~~tL~~~L~~~~g~~--G--vAaiCnGGGgas  389 (396)
T KOG1390         340 KVNVHGGAVALGHPLGMSGARILVTLLHTLEQKGGKI--G--VAAICNGGGGAS  389 (396)
T ss_pred             HCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCE--E--EEEEECCCCCEE
T ss_conf             6367785453378767750539999999998607850--3--798851898500


No 117
>pfam00109 ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain. The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine.
Probab=98.69  E-value=4.8e-08  Score=72.42  Aligned_cols=164  Identities=22%  Similarity=0.262  Sum_probs=99.8

Q ss_pred             CCEEEEEEEEECCCCCCCHHHHHHHH--CCCHHHEEEC----CC--CCEEE-------EECCC------------CCHHH
Q ss_conf             62099999973588613888999880--9997683111----47--50889-------94898------------87999
Q gi|254780489|r    4 SSSCILGFGHAVPNQCIHNSIIERHL--NLKLGVIEQK----TG--IKYRY-------WAEKH------------ETLTD   56 (325)
Q Consensus         4 ~~~~I~g~g~~lP~~~i~n~~l~~~~--~~~~~~i~~~----tG--I~~R~-------~~~~~------------e~~~~   56 (325)
                      ..+.|+|+|.-.|.- .+.+++-+.+  |.+ + |.+.    .+  .....       ..++.            ....-
T Consensus         2 ~~VvITG~G~vtp~G-~~~~~~w~~L~~G~s-~-i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~   78 (243)
T pfam00109         2 EPVAITGMGCRFPGG-VGPEEFWELLLAGRD-A-IREFPADLSGLYPPSRVAGEIYGFDFDAAFFGISPREAEAMDPQQR   78 (243)
T ss_pred             CCEEEECCEEECCCC-CCHHHHHHHHHCCCC-E-EEECCCHHHHCCCCCCCCEECCCCCCCHHHCCCCHHHHHHCCHHHH
T ss_conf             999998668899798-999999999985998-8-8746950644479876010146778781115989999985499999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCC-----EEEEEEEEEC----------------------CCCCC-CCCCCCCCCCCCCCCC
Q ss_conf             999999998643013222344-----2588431002----------------------36887-4322112100238633
Q gi|254780489|r   57 IAIQAGDIALRNANIKKDSIS-----LTLLATSTPD----------------------HLLPP-SSPLITHRLGLMQSGA  108 (325)
Q Consensus        57 la~~Aa~~aL~~a~~~~~dId-----~ii~~s~t~d----------------------~~~P~-~a~~v~~~Lg~~~~~~  108 (325)
                      +++.|+++||++||++++++.     -|+.++....                      ...|+ .+.+|+..+|++. ++
T Consensus        79 ~~~~aa~~Al~dAGl~~~~~~~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~g~~G-p~  157 (243)
T pfam00109        79 LALEAAWEALEDAGLDPASLRGSDRTGVFVGSGSGDYAELQALDSAGGPRRGSPYLTGAWMPSVAAGRISYRLGLRG-PS  157 (243)
T ss_pred             HHHHHHHHHHHHCCCCHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCC-CC
T ss_conf             99999999999849984672788728999986476489999763036743346411056451178889986741579-86


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECC-CCC----------C-------CCCCCC-CCCCCCCCCEEEEEE
Q ss_conf             342101231012567657887438-85058862012-244----------4-------462224-434325442001122
Q gi|254780489|r  109 IDLTGACAGFLYALVMADSYINSH-QKPVLIIAANL-LSR----------R-------INLEDK-DTAIIFGDAAGAVVL  168 (325)
Q Consensus       109 ~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~-~S~----------~-------~d~~d~-~~~~lfGDgA~A~il  168 (325)
                      +-++.+|+++++||..|..+|++| .+.+++.++|. .+.          .       ..|-|+ ...+++|+||+++||
T Consensus       158 ~t~~~ACaSg~~AI~~A~~~I~~G~~d~~i~Gg~~~~~~~~~~~~f~~~~a~~~~~~~~rpfd~~~~G~v~GEGaa~lvL  237 (243)
T pfam00109       158 VTVDTACSSSLVALHAAVRSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSPDGPCKAFDPFADGFVRGEGVGAVLL  237 (243)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEE
T ss_conf             46655207899999999975336983879997841556978999999747857979998887899996553614998999


Q ss_pred             CCC
Q ss_conf             057
Q gi|254780489|r  169 APS  171 (325)
Q Consensus       169 ~~~  171 (325)
                      ++-
T Consensus       238 E~~  240 (243)
T pfam00109       238 KEL  240 (243)
T ss_pred             EEH
T ss_conf             767


No 118
>KOG1391 consensus
Probab=98.67  E-value=1.4e-06  Score=62.96  Aligned_cols=94  Identities=17%  Similarity=0.279  Sum_probs=72.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC----C-CCCCCCCCCCCCCCHHHHHH
Q ss_conf             988799999999999864301322234425884310023688743221121002----3-86333421012310125676
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGL----M-QSGAIDLTGACAGFLYALVM  124 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~----~-~~~~~di~~~C~g~l~aL~~  124 (325)
                      .+-+..||.+.|++.||..+++.++.+|.+|++.+..   .-+.+.++.+..|+    + +.+++.||--|.++.+++..
T Consensus        24 Kg~~aTdL~~~AakAAL~aa~v~~e~VD~VI~GNV~a---SSsDgIYl~RHvGL~~GvP~e~pALtiNRLCGSGFQsiVN  100 (396)
T KOG1391          24 KGLSATDLGVVAAKAALKAANVGAEAVDHVIMGNVLA---SSSDGIYLARHVGLRVGVPKETPALTINRLCGSGFQSIVN  100 (396)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEEEE---CCCCCEEEEECCCCCCCCCCCCCCEEEHHHHCCCHHHHHH
T ss_conf             5754446788999988864388832332588711341---2577267540035322786766733430131312798986


Q ss_pred             HHHHHHCCCCEE-EEEEECCCCC
Q ss_conf             578874388505-8862012244
Q gi|254780489|r  125 ADSYINSHQKPV-LIIAANLLSR  146 (325)
Q Consensus       125 A~~~i~~g~~~v-LVv~~e~~S~  146 (325)
                      +.+-|.-+...+ |-=+.|.+|.
T Consensus       101 gaQ~I~vgea~ivL~GGtEnMSq  123 (396)
T KOG1391         101 GAQEICVGEAEIVLCGGTENMSQ  123 (396)
T ss_pred             HHHHHHCCCCEEEEECCCCCCCC
T ss_conf             67776307615998447452345


No 119
>KOG1389 consensus
Probab=98.63  E-value=4e-07  Score=66.44  Aligned_cols=269  Identities=14%  Similarity=0.123  Sum_probs=137.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCC-CCCCCC-CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             98879999999999986430132223442588431002368874322112-100238-6333421012310125676578
Q gi|254780489|r   50 KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITH-RLGLMQ-SGAIDLTGACAGFLYALVMADS  127 (325)
Q Consensus        50 ~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~-~Lg~~~-~~~~di~~~C~g~l~aL~~A~~  127 (325)
                      .+..+-+|-..+.|..+++.+++|+.|.-|+++++.....- +..++++. .-|.+. .+..-+|--|+++++|......
T Consensus        57 kdt~pDeLl~~vl~a~ie~t~~dp~~igdi~vG~vL~pg~g-a~e~R~a~~~ag~P~tvpv~tvNRqCsSGLqaVadiA~  135 (435)
T KOG1389          57 KDTRPDELLAAVLRAVIEKTNLDPSLIGDIVVGTVLAPGSG-ASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADIAA  135 (435)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHHCCEEEEECCCCCCC-HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             55882899999999997651899789501355210377753-68988999971898656025664342147789999998


Q ss_pred             HHHCCC-CEEEEEEECCCCCCCC--CCCC-C----------CC------------CCCC------CCEEEEEECC-----
Q ss_conf             874388-5058862012244446--2224-4----------34------------3254------4200112205-----
Q gi|254780489|r  128 YINSHQ-KPVLIIAANLLSRRIN--LEDK-D----------TA------------IIFG------DAAGAVVLAP-----  170 (325)
Q Consensus       128 ~i~~g~-~~vLVv~~e~~S~~~d--~~d~-~----------~~------------~lfG------DgA~A~il~~-----  170 (325)
                      -|++|. .-.|-.+.|-+|..+.  |... .          .+            -.||      |-++..--.+     
T Consensus       136 ~Ir~G~ydIGla~GvESMt~~~~~g~~g~~~~~~~~~~~A~dCllpmGitsEnva~rfgvsR~eqD~~Av~S~kkAa~A~  215 (435)
T KOG1389         136 KIRAGFYDIGLAAGVESMTTNYPRGWPGSINPRLQKFEKARDCLLPMGITSENVAERFGVSREEQDEAAVDSHKKAAAAT  215 (435)
T ss_pred             HHHCCCEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             87448366300135112103678888666584243315776144322531577898729776564688888789999876


Q ss_pred             CCCCCCCCCEEEEE-EECCCCCC---EEEEECCC----------------------C---CCCCCCCCCCCCC-----CC
Q ss_conf             76544453113553-21367765---27830698----------------------6---6765445565523-----22
Q gi|254780489|r  171 SPLKDKSGILGIEL-TSDGSKYD---LIKIPTGG----------------------S---TSPAGTNTHDFYM-----RI  216 (325)
Q Consensus       171 ~~~~~~~~il~~~~-~s~~~~~~---~~~~~~~~----------------------~---~~~~~~~~~~~~~-----~~  216 (325)
                      ....-...|+...+ ..|+...+   .+..+.|-                      +   ...........-+     .+
T Consensus       216 ~~G~f~dEIiPv~tkv~D~~g~~k~i~v~~DeGiRp~ttl~~l~klkpvFkkdGttTagNsSQvSDGa~aVLLmkRs~A~  295 (435)
T KOG1389         216 AKGKFKDEIIPVKTKVVDPKGDEKPITVSVDEGIRPNTTLESLAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAM  295 (435)
T ss_pred             HCCCCHHHEEEEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHCCHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHH
T ss_conf             44863233211001215886775662673478878776566776343142217820357631125553564443665676


Q ss_pred             CCCH---HHHH-HHCCCHH---------HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH-----
Q ss_conf             4514---5434-3201003---------67898899740120012246305654138999999719786570021-----
Q gi|254780489|r  217 TNGA---DIFY-NAVKIMA---------QSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS-----  278 (325)
Q Consensus       217 ~~g~---~v~~-~~~~~~~---------~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~-----  278 (325)
                      +.|-   .+|+ |+.--++         -.|..+|+.+||..+|||+|=++.+=..-.-...++|+|++||+-.+     
T Consensus       296 qlgLPvlgvfr~f~~vGv~P~iMGiGPavAIp~alk~aGL~v~did~FEINEAFAsQ~~yc~~KL~ld~ekVN~~GGaiA  375 (435)
T KOG1389         296 QLGLPVLGVFRDFAAVGVPPAIMGIGPAVAIPKALKAAGLEVDDIDLFEINEAFASQALYCRNKLGLDPEKVNVNGGAIA  375 (435)
T ss_pred             HCCCCEEEEEEEEEEECCCHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCHHHCCCCCCEEE
T ss_conf             54995467765324406888983877243428899874985223541323388888899999873898888488886233


Q ss_pred             -HHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf             -854093300059999999998067899989999986155102
Q gi|254780489|r  279 -LKDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRRGNDR  320 (325)
Q Consensus       279 -l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s~  320 (325)
                       -.-.|-||+-.+-..|+++-+++.=.+.- |+-+-.|.|+..
T Consensus       376 lGHPlGatGAR~VaTlL~emKrrgkd~~~G-VvSmCIGtGmGa  417 (435)
T KOG1389         376 LGHPLGATGARCVATLLHEMKRRGKDCRFG-VVSMCIGTGMGA  417 (435)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCC-EEEEEECCCCCH
T ss_conf             068757741759999999998633255555-688852478532


No 120
>KOG1394 consensus
Probab=98.56  E-value=7e-07  Score=64.84  Aligned_cols=254  Identities=20%  Similarity=0.259  Sum_probs=139.6

Q ss_pred             CCEEEEEEEEECCCCCCCHHHHHHHHC----CC----H----------HHEEECCCCCEEEEECCCC----CHHHHHHHH
Q ss_conf             620999999735886138889998809----99----7----------6831114750889948988----799999999
Q gi|254780489|r    4 SSSCILGFGHAVPNQCIHNSIIERHLN----LK----L----------GVIEQKTGIKYRYWAEKHE----TLTDIAIQA   61 (325)
Q Consensus         4 ~~~~I~g~g~~lP~~~i~n~~l~~~~~----~~----~----------~~i~~~tGI~~R~~~~~~e----~~~~la~~A   61 (325)
                      ..+.|+|+|.-.|--.=.+......+.    ++    +          ++|.+..  .+-||...++    +..-+++.|
T Consensus        24 rRVVITGmG~VTplG~~v~~~w~~Ll~GesGI~~l~~~d~k~~p~~v~g~Ip~f~--~e~~~s~~~~r~ms~~~~~al~a  101 (440)
T KOG1394          24 RRVVITGMGAVTPLGNGVHTSWRNLLSGESGISSLEGPDYKSIPFTVAGKIPRFS--VEDYVSKGDERRMSKFTKLALTA  101 (440)
T ss_pred             EEEEEECCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHEEECCCCC--CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             0599955634202777757789876536667421466420247620113056633--11443624466655789999999


Q ss_pred             HHHHHHHCCCCCC---CCCEE----EEEEEEE---------------------CCCCC----CC-CCCCCCCCCCCCCCC
Q ss_conf             9998643013222---34425----8843100---------------------23688----74-322112100238633
Q gi|254780489|r   62 GDIALRNANIKKD---SISLT----LLATSTP---------------------DHLLP----PS-SPLITHRLGLMQSGA  108 (325)
Q Consensus        62 a~~aL~~a~~~~~---dId~i----i~~s~t~---------------------d~~~P----~~-a~~v~~~Lg~~~~~~  108 (325)
                      +++||+++++.+.   +.|..    ..++.-.                     ++..|    ++ +.+|.-++|+.. +.
T Consensus       102 a~eAL~da~~~~~~~~e~dk~~~GV~iGtgmg~l~~i~e~a~~~~~~g~rrvsPffVPkil~NM~ag~vsm~~gl~G-pn  180 (440)
T KOG1394         102 AEEALKDAGLLDVNLSEEDKEKTGVLIGTGMGDLEDIYETAQNLSEKGYRRVSPFFVPKILTNMAAGYVSMKYGLRG-PN  180 (440)
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCHHHHHHCCCC-CC
T ss_conf             99999736888864124554410458514633299999999999872234338630006650365103345315767-76


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEE-CCC---------------CC-CCCCC------C-CCCCCCCCCCEE
Q ss_conf             342101231012567657887438850588620-122---------------44-44622------2-443432544200
Q gi|254780489|r  109 IDLTGACAGFLYALVMADSYINSHQKPVLIIAA-NLL---------------SR-RINLE------D-KDTAIIFGDAAG  164 (325)
Q Consensus       109 ~di~~~C~g~l~aL~~A~~~i~~g~~~vLVv~~-e~~---------------S~-~~d~~------d-~~~~~lfGDgA~  164 (325)
                      ..++.+|+.+.+++--+.++|+-|...+.|.++ |.+               |+ .-||.      | ....|..|.|++
T Consensus       181 hsvSTACATg~h~igda~n~Ir~GdaDvmlAGgsE~~I~PlslaGF~r~RALSt~nd~P~~aSRPfD~~RdGFVmGEGag  260 (440)
T KOG1394         181 HSVSTACATGNHCIGDAFNFIRLGDADVMLAGGSEACINPLSLAGFSRARALSTRNDNPQKASRPFDKKRDGFVMGEGAG  260 (440)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCEE
T ss_conf             16676665143058888878870765455226753000522234378877764158993103788866777356506605


Q ss_pred             EEEECCCCCCCCC--CCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf             1122057654445--31135532136776527830698667654455655232245145434320100367898899740
Q gi|254780489|r  165 AVVLAPSPLKDKS--GILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSD  242 (325)
Q Consensus       165 A~il~~~~~~~~~--~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~g  242 (325)
                      .++++.=+...+.  .|+ .++.-++-..|.+.+..+                ..+|.        -...+++++|+++|
T Consensus       261 vlvlEelEHA~~RgA~I~-AE~lGygls~Da~HiT~P----------------~~dG~--------Ga~~am~raL~~Ag  315 (440)
T KOG1394         261 VLVLEELEHAKKRGAPIY-AEVLGYGLSSDAYHITSP----------------DPDGA--------GAVLAMERALKDAG  315 (440)
T ss_pred             EEEHHHHHHHHHCCCCEE-HHHHCCCCCCCCCCCCCC----------------CCCCC--------HHHHHHHHHHHHCC
T ss_conf             876186788987499152-776457525663434789----------------98730--------58999999998749


Q ss_pred             CCCCCCCEEEECCCCCHHH-----HHHHHHCCCCHH--HHHHHHHHCCCC
Q ss_conf             1200122463056541389-----999997197865--700218540933
Q gi|254780489|r  243 LQPQDINRFIPHQANSRII-----QKVCEKIGLSKR--IMVNSLKDFGNS  285 (325)
Q Consensus       243 l~~~did~~i~Hq~~~~~~-----~~~~~~lgi~~~--~~~~~l~~~GN~  285 (325)
                      ++|+||||+=-|.-+-..-     +++.+.|+-...  ++-.+=--.||+
T Consensus       316 l~pe~i~YvNAHATST~~GD~aE~~Ai~~vf~~~~~~~~vsStKgaiGHL  365 (440)
T KOG1394         316 LSPEDIDYVNAHATSTPLGDAAEAEAIKRVFGEHNIASKVSSTKGAIGHL  365 (440)
T ss_pred             CCHHHCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf             99565570530333576730899999999841478654213565135420


No 121
>KOG1406 consensus
Probab=98.54  E-value=6.2e-08  Score=71.73  Aligned_cols=91  Identities=22%  Similarity=0.229  Sum_probs=72.6

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             79999999999986430132223442588431002368874322112100238633342101231012567657887438
Q gi|254780489|r   53 TLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSH  132 (325)
Q Consensus        53 ~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g  132 (325)
                      .-.||+.+|..+||+++++.-++|+.-+.+-...|..   +.-+-..++|+..++.|.+++.|+.+..||-++.+.|++|
T Consensus        28 dypd~a~ea~tkal~da~ikys~vqqa~vgyvfgdst---cgqraiyevgmtgipi~nvnnncatgssalflakqiiesg  104 (408)
T KOG1406          28 DYPDFAKEAITKALQDAGIKYSEVQQAVVGYVFGDST---CGQRAIYEVGMTGIPIYNVNNNCATGSSALFLAKQIIESG  104 (408)
T ss_pred             CCCHHHHHHHHHHHHHCCCCHHHHHHHHHEEEECCCC---CCHHHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHHHCC
T ss_conf             6707899999988886299779987664124525875---3067888704667624623675356704889999998657


Q ss_pred             -CCEEEEEEECCCCC
Q ss_conf             -85058862012244
Q gi|254780489|r  133 -QKPVLIIAANLLSR  146 (325)
Q Consensus       133 -~~~vLVv~~e~~S~  146 (325)
                       ...+|..+-|.+++
T Consensus       105 n~dcvlalgfekm~~  119 (408)
T KOG1406         105 NSDCVLALGFEKMER  119 (408)
T ss_pred             CCCEEEEECHHHCCC
T ss_conf             753587613023077


No 122
>KOG1202 consensus
Probab=98.15  E-value=2e-05  Score=55.29  Aligned_cols=215  Identities=20%  Similarity=0.287  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCC-----EEEEEE--EEECCC--CCC----------CCCCCCCCCCCC---CCCCCCC
Q ss_conf             999999999998643013222344-----258843--100236--887----------432211210023---8633342
Q gi|254780489|r   54 LTDIAIQAGDIALRNANIKKDSIS-----LTLLAT--STPDHL--LPP----------SSPLITHRLGLM---QSGAIDL  111 (325)
Q Consensus        54 ~~~la~~Aa~~aL~~a~~~~~dId-----~ii~~s--~t~d~~--~P~----------~a~~v~~~Lg~~---~~~~~di  111 (325)
                      ..-|-.++--+|+-++|++|+|+.     .-|-+|  .|...+  .|.          .-++.++++-..   +-+.|.+
T Consensus        87 ~lRlLLE~t~EAivDaGiNP~dLRGsrTGV~vG~S~sETs~~l~~d~dtv~GY~ltGC~RaMfaNRiSytFDf~GPSfsv  166 (2376)
T KOG1202          87 QLRLLLEATWEAIVDAGINPDDLRGSRTGVFVGVSGSETSGALSQDPDTVNGYSMTGCVRAMFANRISYTFDFQGPSFSV  166 (2376)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCEEEEEECCCCCEEE
T ss_conf             99999998899998368886663764431799735543443224798600331014778998633405899536883455


Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCC-EEEEEEECCC-----C-CCCC---CCCCCC---------CCCCCCCEEEEEECCCC
Q ss_conf             10123101256765788743885-0588620122-----4-4446---222443---------43254420011220576
Q gi|254780489|r  112 TGACAGFLYALVMADSYINSHQK-PVLIIAANLL-----S-RRIN---LEDKDT---------AIIFGDAAGAVVLAPSP  172 (325)
Q Consensus       112 ~~~C~g~l~aL~~A~~~i~~g~~-~vLVv~~e~~-----S-~~~d---~~d~~~---------~~lfGDgA~A~il~~~~  172 (325)
                      ..+|++.+.||+.|.+-|++|+- .++|.++...     | +++.   .++..+         ..-=.||.+|++|.+..
T Consensus       167 DTACSSSL~ALq~A~~~ir~Gqcd~AiVaG~~liLkPt~slQFlRLgmls~dGsCkaFDeagnGY~Rseg~~avllqrk~  246 (2376)
T KOG1202         167 DTACSSSLMALQNAFQDIRSGQCDAAIVAGANLILKPTTSLQFLRLGMLSPDGSCKAFDEAGNGYCRSEGVVAVLLQRKS  246 (2376)
T ss_pred             ECHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEECCCHHHHHHHHCCCCCCCCCCCHHCCCCCEEECCCEEEEEEEHHH
T ss_conf             12456889999999999864688466410562575441456778743758898610010037823512756999874457


Q ss_pred             CCCC--CCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCE
Q ss_conf             5444--53113553213677652783069866765445565523224514543432010036789889974012001224
Q gi|254780489|r  173 LKDK--SGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINR  250 (325)
Q Consensus       173 ~~~~--~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~  250 (325)
                      ...+  ..|+.....|||-.-..+.+|                    .|        +.-.+.+++...+.|+.|+++-|
T Consensus       247 ~ArRvYAtilnartNTDGfKEqGvTfP--------------------~G--------~~Q~qLi~e~Yse~Gl~P~sv~Y  298 (2376)
T KOG1202         247 LARRVYATILNARTNTDGFKEQGVTFP--------------------SG--------DMQEQLIRETYSEAGLNPESVVY  298 (2376)
T ss_pred             HHHHHHHHHHCCCCCCCCHHHCCCCCC--------------------CC--------HHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             787888875204557874221386578--------------------80--------79999999999861989232799


Q ss_pred             EEECCCCCHH---------HHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             6305654138---------9999997197865700218540933000599999999
Q gi|254780489|r  251 FIPHQANSRI---------IQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLE  297 (325)
Q Consensus       251 ~i~Hq~~~~~---------~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~  297 (325)
                      +=-|-.+.+.         .+.+++.=--| =-+-++-.+.||.-.||=..+|...
T Consensus       299 vEAHGtGTkVGDpQEaN~it~~fC~~Rt~p-LLIGSvKSNMGHaEPASGv~alaKi  353 (2376)
T KOG1202         299 VEAHGTGTKVGDPQEANGITRFFCATRTTP-LLIGSVKSNMGHAEPASGVCALAKI  353 (2376)
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHCCCCC-EEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf             972167787799678736889885158873-2765202457999864007899999


No 123
>COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism]
Probab=98.11  E-value=4.2e-06  Score=59.79  Aligned_cols=95  Identities=19%  Similarity=0.128  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHC--CCCCCCCCEEEEEEEEECC-CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9999999999986430--1322234425884310023-68874322112100238-633342101231012567657887
Q gi|254780489|r   54 LTDIAIQAGDIALRNA--NIKKDSISLTLLATSTPDH-LLPPSSPLITHRLGLMQ-SGAIDLTGACAGFLYALVMADSYI  129 (325)
Q Consensus        54 ~~~la~~Aa~~aL~~a--~~~~~dId~ii~~s~t~d~-~~P~~a~~v~~~Lg~~~-~~~~di~~~C~g~l~aL~~A~~~i  129 (325)
                      ..++.....+..+++.  ++++.+||-++.++..+.. ..+..+..++..+|++. .+++.++.+|.+++.++..|...|
T Consensus        27 ~e~l~~a~~~a~~~~~~~~vd~~~v~~vi~G~~~~~g~~~~~~ar~~a~~aGl~~~~p~~~V~~~c~SG~~Av~~A~~~I  106 (392)
T COG0183          27 AEALGAALIDAGLERAPADVDAADVDDVILGCVLQAGEQGQNIARQAALAAGLPGSVPAVTVNRACASGLAAVRLAAQAI  106 (392)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHEEECCCCCHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf             99999999997644222049855410214401341100335388999998599989870899645711999999999999


Q ss_pred             HCC-CCEEEEEEECCCCCCC
Q ss_conf             438-8505886201224444
Q gi|254780489|r  130 NSH-QKPVLIIAANLLSRRI  148 (325)
Q Consensus       130 ~~g-~~~vLVv~~e~~S~~~  148 (325)
                      ++| .+-+|+++.|.+|+..
T Consensus       107 ~sG~~dvvlagG~E~mS~~~  126 (392)
T COG0183         107 ASGEADVVLAGGVEKMSDAP  126 (392)
T ss_pred             HCCCCCEEEEEEECCCCCCC
T ss_conf             77998889998561145687


No 124
>pfam08540 HMG_CoA_synt_C Hydroxymethylglutaryl-coenzyme A synthase C terminal.
Probab=98.02  E-value=5.6e-05  Score=52.39  Aligned_cols=107  Identities=19%  Similarity=0.220  Sum_probs=65.3

Q ss_pred             CCHHHHHHHCCCHHHHHHHHHHH---------HCCCCCCCCEEEECCCCCHHHHHHHHHC--------------------
Q ss_conf             51454343201003678988997---------4012001224630565413899999971--------------------
Q gi|254780489|r  218 NGADIFYNAVKIMAQSAKQSLRK---------SDLQPQDINRFIPHQANSRIIQKVCEKI--------------------  268 (325)
Q Consensus       218 ~g~~v~~~~~~~~~~~i~~~l~~---------~gl~~~did~~i~Hq~~~~~~~~~~~~l--------------------  268 (325)
                      ||+.-....++.+-.+.+...++         .+...+++|++++|.+.-++.++-..+|                    
T Consensus        31 DGk~Si~cYl~ALd~cy~~Y~~K~~~~~~~~~~~~~ld~fd~~~FH~Py~KlvqKs~arl~~nD~~~~~~~~~~~~~~~~  110 (282)
T pfam08540        31 DGKLSLQCYLKALDSCYKNYCKKIEKQTKDGGTKFGLDDFDYVIFHSPYCKLVQKSLARLLYNDFLRNPSSDKGNGVYEK  110 (282)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHH
T ss_conf             72889999999999999999999873002367766376677899857544899999999998765306552011000111


Q ss_pred             -----CCCHH----------------------HH-HH--HHHHCCCCCCCHHHHHHHHHHHHCCC--CCCCEEEEEEECC
Q ss_conf             -----97865----------------------70-02--18540933000599999999980678--9998999998615
Q gi|254780489|r  269 -----GLSKR----------------------IM-VN--SLKDFGNSSSASIPLSLSLENQRKPF--QKGEKILTISCRR  316 (325)
Q Consensus       269 -----gi~~~----------------------~~-~~--~l~~~GN~~sAsi~~~L~~~~~~g~i--~~Gd~vll~~~G~  316 (325)
                           +++.+                      |+ +.  .-.++||+.+||++.+|.-++.....  -.|++|.++|.|+
T Consensus       111 l~~~~~~~~e~s~~dk~~ek~~~~~sk~~f~~kv~psl~~~~~vGNmYTaSlY~~L~SLL~~~~~~~L~GkRIg~FSYGS  190 (282)
T pfam08540       111 LEALGGLKLEDSYTDRDLEKAFMQLSKPLFKKKTKPSLLLPTQVGNMYTASLYAALASLLSHVSADELAGKRIGMFSYGS  190 (282)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC
T ss_conf             10001464454010068999999870898986326187887860750069999999999843775234899899985166


Q ss_pred             CCCCCCCC
Q ss_conf             51020101
Q gi|254780489|r  317 GNDRGIYC  324 (325)
Q Consensus       317 G~s~ga~l  324 (325)
                      |..+-.+.
T Consensus       191 Glaas~FS  198 (282)
T pfam08540       191 GLAASLFS  198 (282)
T ss_pred             CCCEEEEE
T ss_conf             61124675


No 125
>KOG1392 consensus
Probab=97.42  E-value=0.00039  Score=46.92  Aligned_cols=111  Identities=17%  Similarity=0.196  Sum_probs=77.7

Q ss_pred             EEECCCCCEEEEEC----CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf             31114750889948----9887999999999998643013222344258843100236887432211210023-863334
Q gi|254780489|r   36 IEQKTGIKYRYWAE----KHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAID  110 (325)
Q Consensus        36 i~~~tGI~~R~~~~----~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~d  110 (325)
                      |.---|+++-++..    .+.-+-||+-+|...+|++..++.+.||+|||+++-.+--.-..|..-+-.-|.+ ..++-.
T Consensus        44 ivlvdgvrtpfl~sgt~ykdlmphdlar~al~~ll~kt~lpke~~dyii~gtviqevktsniareaal~agfsdktpaht  123 (465)
T KOG1392          44 IVLVDGVRTPFLVSGTVYKDLMPHDLAREALKALLEKTKLPKEQLDYIICGTVIQEVKTSNIAREAALLAGFSDKTPAHT  123 (465)
T ss_pred             EEEEECCCCCEEECCCCHHHHCHHHHHHHHHHHHHHHCCCCHHHHCEEEEHHHHHHHHCCHHHHHHHHHCCCCCCCCCCE
T ss_conf             69980365753652620553060588999999998752598888334530345777750128889998658988886415


Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCEEEEEEE-CCCCC
Q ss_conf             2101231012567657887438850588620-12244
Q gi|254780489|r  111 LTGACAGFLYALVMADSYINSHQKPVLIIAA-NLLSR  146 (325)
Q Consensus       111 i~~~C~g~l~aL~~A~~~i~~g~~~vLVv~~-e~~S~  146 (325)
                      +.++|-+.-.|+-....+|++|...+.|.++ |.+|.
T Consensus       124 vtmacissn~amttgmgliatg~~dvivaggvelmsd  160 (465)
T KOG1392         124 VTMACISSNVAMTTGMGLIATGNADVIVAGGVELMSD  160 (465)
T ss_pred             EEEEHHCCCHHHHCCCEEEEECCCCEEEECCEEECCC
T ss_conf             6521010351433062057507767798756554026


No 126
>pfam00195 Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain. The C-terminal domain of Chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in this N-terminal domain.
Probab=96.66  E-value=0.0087  Score=38.07  Aligned_cols=92  Identities=15%  Similarity=0.181  Sum_probs=60.0

Q ss_pred             HHHH-HHCCCHHHHHHHHHHHHCCCCCCCCEEEECC----CCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             5434-3201003678988997401200122463056----5413899999971978657002185409330005999999
Q gi|254780489|r  221 DIFY-NAVKIMAQSAKQSLRKSDLQPQDINRFIPHQ----ANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLS  295 (325)
Q Consensus       221 ~v~~-~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq----~~~~~~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~  295 (325)
                      ++|. .+.+...+..+++|++.|+.++||+|+|+-.    ....+--.++++||++++-....+--.|.-+..   ..|.
T Consensus        96 ~~~~~~a~~La~~Aa~~AL~~aG~~~~dIthlv~vt~TG~~~Pg~d~~l~~~LGL~~~v~R~~i~~~GC~gg~---~gL~  172 (228)
T pfam00195        96 DIAVVEVPKLGKEAALKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRVMLYQQGCFAGG---TVLR  172 (228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCHHEEEECCCCHHHH---HHHH
T ss_conf             9999999999999999999995889889999999947999887478999998298987211141145416489---9999


Q ss_pred             HHHHHCCCCCCCEEEEEEEC
Q ss_conf             99980678999899999861
Q gi|254780489|r  296 LENQRKPFQKGEKILTISCR  315 (325)
Q Consensus       296 ~~~~~g~i~~Gd~vll~~~G  315 (325)
                      .+-+--+-.||.+||+++..
T Consensus       173 ~A~~~~~~~p~~~VLvv~~E  192 (228)
T pfam00195       173 LAKDLAENNKGARVLVVCSE  192 (228)
T ss_pred             HHHHHHHHCCCCEEEEEEEE
T ss_conf             99999982999879999824


No 127
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=96.46  E-value=0.0093  Score=37.89  Aligned_cols=69  Identities=14%  Similarity=0.190  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             67898899740120012246305654138999999719786570021--85409330005---99999999980
Q gi|254780489|r  232 QSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       232 ~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ..++++|+++|++++|||.|=+|-+-....-.+.+.||++++|+-.+  .--+||=-.||   +.+.|.+.+++
T Consensus       292 ~A~~k~L~~agl~~~Did~~EinEAFA~~~l~~~~~l~~d~~kvN~~GGaiA~GHP~GaTGar~~~~l~~~L~~  365 (390)
T PRK06504        292 PATERALKKAGMKIDDIDLYEVNEAFASVPLAWLKATGADPERLNVNGGAIALGHPLGASGTKLMTTLIHALKQ  365 (390)
T ss_pred             HHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999859981138854510355888999999848986767888639872989130799999999999998


No 128
>PRK06845 consensus
Probab=96.38  E-value=0.015  Score=36.58  Aligned_cols=58  Identities=19%  Similarity=0.238  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH
Q ss_conf             67898899740120012246305654138999999719786570021--85409330005
Q gi|254780489|r  232 QSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS  289 (325)
Q Consensus       232 ~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs  289 (325)
                      ..++++|+++|++++|||.|=.|-+-....-.+.+.|||+++++-.+  +--+||=-.||
T Consensus       294 ~A~~~al~~agl~~~Did~~EinEAFA~~~l~~~~~lgl~~~~vN~~GGaiA~GHPiGAT  353 (392)
T PRK06845        294 PAIRAALERAGLTLSDMDLVEVNEAFAAQYLAVEKELGLNPEITNVNGGAIALGHPLGAS  353 (392)
T ss_pred             HHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCC
T ss_conf             999999998599965688667614678899999997098915428884188609881104


No 129
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases; InterPro: IPR002155   Two different types of thiolase , ,  are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis.   In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes.   There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction.   Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases ..
Probab=96.31  E-value=0.002  Score=42.32  Aligned_cols=132  Identities=20%  Similarity=0.241  Sum_probs=77.1

Q ss_pred             CCCCCEEEEEECCCCCCCCCCC--EEE-EEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCH-HHHHHHCCCHHHH
Q ss_conf             2544200112205765444531--135-53213677652783069866765445565523224514-5434320100367
Q gi|254780489|r  158 IFGDAAGAVVLAPSPLKDKSGI--LGI-ELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGA-DIFYNAVKIMAQS  233 (325)
Q Consensus       158 lfGDgA~A~il~~~~~~~~~~i--l~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~  233 (325)
                      -+.|||+|+||..++...+.++  -.. ++.+.+.               .+.           .+ ++|-.+   -..+
T Consensus       283 ~~nDGA~a~~lmSe~~a~~lGL~~~PlA~i~~~~~---------------~G~-----------dP~~~mg~G---P~~A  333 (447)
T TIGR01930       283 PLNDGAAALLLMSEEKAKELGLNKTPLARIVSFAV---------------AGV-----------DPVEIMGLG---PVPA  333 (447)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE---------------ECC-----------CHHHHHCCC---CHHH
T ss_conf             21235642566507999980889942689941033---------------305-----------748861677---5889


Q ss_pred             HHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCC---------------C--CHHHHHHHHH--HCCCCC---CCHHH
Q ss_conf             898899740120012246305654138999999719---------------7--8657002185--409330---00599
Q gi|254780489|r  234 AKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIG---------------L--SKRIMVNSLK--DFGNSS---SASIP  291 (325)
Q Consensus       234 i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lg---------------i--~~~~~~~~l~--~~GN~~---sAsi~  291 (325)
                      ++++|+|+||+.+|||+|=+|-+=....-.+.+.|+               +  +.+|+=.+--  =+||=-   .|=+.
T Consensus       334 ~~~aL~kaGL~~~diDl~E~NEAFAaqvL~~~~~L~~~~~~~~~LG~~~a~~~~~~~k~NvnGGAIAlGHPlGasGARi~  413 (447)
T TIGR01930       334 IPKALKKAGLSISDIDLFEINEAFAAQVLASIKELGLDDYIRQALGRDTALLDIDLEKVNVNGGAIALGHPLGASGARIV  413 (447)
T ss_pred             HHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEECCCCCCCCCCCCCHHHCCCCCCCHHHHHH
T ss_conf             99999984987335031013678999999999971784688863041110025861241766532111630023188999


Q ss_pred             HHHHHHHHHC--CCCCCCEEEEEEECCCC
Q ss_conf             9999999806--78999899999861551
Q gi|254780489|r  292 LSLSLENQRK--PFQKGEKILTISCRRGN  318 (325)
Q Consensus       292 ~~L~~~~~~g--~i~~Gd~vll~~~G~G~  318 (325)
                      +.|-+.+++.  ..+-|=-=|+++.|.|.
T Consensus       414 ~tL~~~L~~~~~g~~~G~at~C~GGGqG~  442 (447)
T TIGR01930       414 TTLLHELKRRKKGKRYGLATLCVGGGQGA  442 (447)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHCE
T ss_conf             99999998514895301666444550000


No 130
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional
Probab=96.10  E-value=0.024  Score=35.26  Aligned_cols=70  Identities=13%  Similarity=0.124  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHH--HHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             3678988997401200122463056541389999997197865--70021--85409330005---99999999980
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKR--IMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~--~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ...++++|+++|++++|||.|=+|.+=....-.+.+.||++.|  |+-.+  .=-+||=-.||   +.+.|-+.+++
T Consensus       299 ~~A~~k~L~~agl~~~Did~~EinEAFA~q~l~~~~~lg~~~d~~kvN~~GGaiAlGHP~GAsGarl~~~l~~~L~~  375 (400)
T PRK13359        299 APATQKLLARLGMTLDQFDVIELNEAFASQGLAVLRMLGVADDDARVNPNGGAIALGHPLGASGARLVTTALYQLHR  375 (400)
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999976998456877786046688899999981999877748988668874888022479999999999998


No 131
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=96.09  E-value=0.029  Score=34.64  Aligned_cols=11  Identities=9%  Similarity=0.060  Sum_probs=4.6

Q ss_pred             HHHHHHCCCCC
Q ss_conf             99864301322
Q gi|254780489|r   63 DIALRNANIKK   73 (325)
Q Consensus        63 ~~aL~~a~~~~   73 (325)
                      ++..++.|+.-
T Consensus        42 ~~i~~~tgI~~   52 (361)
T cd00831          42 KRLCAKTGIET   52 (361)
T ss_pred             HHHHHCCCCCE
T ss_conf             99997269861


No 132
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=96.05  E-value=0.016  Score=36.29  Aligned_cols=70  Identities=13%  Similarity=0.181  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             367898899740120012246305654138999999719786570021--85409330005---99999999980
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ...++++|+++|++++|||.|=.|-+-....-.+.+.|+||++|+-.+  .--+||=-.||   +...|.+.+++
T Consensus       298 v~A~~k~l~~agl~~~Did~~EinEAFA~~~l~~~~~l~i~~~~vN~~GGaiA~GHP~GASGarl~~~l~~~L~~  372 (397)
T PRK06954        298 VGAIRKLFEKNGWRAAEVDLYEINEAFAVVTMAAMKEHGLPHEKVNVNGGACALGHPIGASGARILVTLIGALRK  372 (397)
T ss_pred             HHHHHHHHHHCCCCHHHCCEEEEHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999999849996656523540577888999999809994647888638875888220089999999999998


No 133
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA; InterPro: IPR004432   Members of this entry represent PfaA, which is involved in omega-3 polyunsaturated fatty acid biosynthesis, for example PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is found together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologues of PfaA, also included in this entry, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis; an alternative to the more familiar iterated mechanism of chain extension and desaturation, and like PfaA the more distant homologues are likewise found near genes for homologues of PfaB, PfaC, and/or PfaD..
Probab=96.05  E-value=0.007  Score=38.71  Aligned_cols=171  Identities=20%  Similarity=0.325  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEEE--EE---EECCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             99999999864301322234425884--31---002368874-----322112100238633342101231012567657
Q gi|254780489|r   57 IAIQAGDIALRNANIKKDSISLTLLA--TS---TPDHLLPPS-----SPLITHRLGLMQSGAIDLTGACAGFLYALVMAD  126 (325)
Q Consensus        57 la~~Aa~~aL~~a~~~~~dId~ii~~--s~---t~d~~~P~~-----a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~  126 (325)
                      |-.--.++.|+.+|++-+|=.+||-=  -.   +-+.-+|+.     +.+|++|.-+-+.-|. +..+|+|.|.||++|-
T Consensus       141 LQyPVL~KV~K~SG~~d~D~~~lI~KF~~~Yi~WEENSFPG~LGNVIsGRIANRFDlGG~NCV-VDAACAGSLAA~~~Al  219 (2773)
T TIGR02813       141 LQYPVLKKVFKASGVEDEDSEMLIKKFQDQYIHWEENSFPGSLGNVISGRIANRFDLGGMNCV-VDAACAGSLAALRLAL  219 (2773)
T ss_pred             CCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHCCCCCCHH-HHHHHHHHHHHHHHHH
T ss_conf             033368888741588764689999987621344414578976433010101100015884256-6664366799999999


Q ss_pred             HHHHCCCCEEEE---EEECC-------CCCC--------CCCCCC-CCCCCCCCCEEEEEECCCCCCCCC--CC----EE
Q ss_conf             887438850588---62012-------2444--------462224-434325442001122057654445--31----13
Q gi|254780489|r  127 SYINSHQKPVLI---IAANL-------LSRR--------INLEDK-DTAIIFGDAAGAVVLAPSPLKDKS--GI----LG  181 (325)
Q Consensus       127 ~~i~~g~~~vLV---v~~e~-------~S~~--------~d~~d~-~~~~lfGDgA~A~il~~~~~~~~~--~i----l~  181 (325)
                      .-+--|+..++|   ||+|.       +|+.        +.|-|- +-.++.|.|-|=+-|-|=+..|+.  +|    .+
T Consensus       220 s~L~E~RSe~MI~GGVC~DNSP~MYMSFSKTPAFTT~E~I~PFD~DSKGMMIGEGIGM~AlKRLeDAERDGD~iYaV~KG  299 (2773)
T TIGR02813       220 SELLEGRSEMMITGGVCTDNSPFMYMSFSKTPAFTTNEDIQPFDIDSKGMMIGEGIGMVALKRLEDAERDGDRIYAVIKG  299 (2773)
T ss_pred             HHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf             86302532145627532488873020236787656788534331456754431655556533211010588778998731


Q ss_pred             EEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf             5532136776527830698667654455655232245145434320100367898899740120012246305654
Q gi|254780489|r  182 IELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQAN  257 (325)
Q Consensus       182 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~  257 (325)
                      .-..|||.+.- ++-|                  ..+|          -.+..+++.+++|+.|..+-.+=-|=-+
T Consensus       300 vGaSSDGkFKS-IYAP------------------RP~G----------QAKAL~RAYdDAGF~P~~~GliEAHGTG  346 (2773)
T TIGR02813       300 VGASSDGKFKS-IYAP------------------RPEG----------QAKALKRAYDDAGFAPHTVGLIEAHGTG  346 (2773)
T ss_pred             CCCCCCCCEEE-EECC------------------CCCH----------HHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf             01376873223-2178------------------9844----------6899875464327997511006216777


No 134
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=96.05  E-value=0.025  Score=35.04  Aligned_cols=69  Identities=17%  Similarity=0.235  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             67898899740120012246305654138999999719786570021--85409330005---99999999980
Q gi|254780489|r  232 QSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       232 ~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ..++++|+++|++++|||.+=+|-+=....-...+.||++++++-.+  +--+||=..||   +.+.|.+.+++
T Consensus       296 ~A~~~al~~agl~~~Did~~EinEAFA~~~l~~~~~lg~~~~~vN~~GGaia~GHP~GATGar~v~~l~~~L~~  369 (394)
T PRK06445        296 PASRKALEKAGLKVKDIDLWEINEAFAVVVLYAIKELGIDPERVNIRGGAIAIGHPLGATGARIIGTLARQLQI  369 (394)
T ss_pred             HHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999739986678866760377888999999809887765898538872988021389999999999998


No 135
>PRK07491 consensus
Probab=96.04  E-value=0.011  Score=37.44  Aligned_cols=69  Identities=20%  Similarity=0.242  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             67898899740120012246305654138999999719786570021--85409330005---99999999980
Q gi|254780489|r  232 QSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       232 ~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ..++++|+++|++++|||.|=+|-+-....-.+.+.||++++|+-.+  .--+||=-.||   +...|.+.+++
T Consensus       294 ~A~~k~L~~agl~~~Did~~EinEAFA~q~l~~~~~lg~d~~kvN~~GGaiA~GHP~GaTGarl~~~l~~~L~~  367 (392)
T PRK07491        294 PASRKALEKAGWSVGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARVLNTLLFEMQR  367 (392)
T ss_pred             HHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999769985568877750567888999999839978886898548873888020089999999999998


No 136
>PRK08041 consensus
Probab=96.02  E-value=0.026  Score=34.98  Aligned_cols=70  Identities=19%  Similarity=0.187  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             367898899740120012246305654138999999719786570021--85409330005---99999999980
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ...++++|+++|++++|||.|=+|-+=....-.+.+.|+++++|+-.+  .--+||=-.||   +.+.|-+.+++
T Consensus       293 v~A~~k~L~~agl~~~Did~~EinEAFA~q~l~~~~~l~~d~~~vN~~GGaiA~GHP~GATGarl~~~l~~~L~~  367 (391)
T PRK08041        293 VYATRRCLERVGWQLADVDLIEANEAFAAQALSVGKMLEWDERRVNVNGGAIALGHPIGASGCRILVSLVHEMVK  367 (391)
T ss_pred             HHHHHHHHHHCCCCHHHCCEEEEEHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999999859985448678860477999999999738983638988528874888121589999999999998


No 137
>PRK05790 acetyl-CoA acetyltransferase; Provisional
Probab=95.97  E-value=0.015  Score=36.62  Aligned_cols=69  Identities=20%  Similarity=0.229  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             67898899740120012246305654138999999719786570021--85409330005---99999999980
Q gi|254780489|r  232 QSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       232 ~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ..++++|+++|++++|||.|=+|-+-....-.+.+.|+++++|+-.+  .--+||=-.||   +...|.+.+++
T Consensus       295 ~A~~~~l~~agl~~~Did~~Ei~EAFA~~~l~~~~~l~~~~~~vN~~GGaiA~GHP~GATG~r~v~~l~~~L~~  368 (393)
T PRK05790        295 PAIRKALEKAGWTLADLDLIEINEAFAAQALAVEKELGLDPEKVNVNGGAIALGHPIGASGARILVTLLHEMKR  368 (393)
T ss_pred             HHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999759980349778870145888999999829995773898548861988022589999999999987


No 138
>PRK07800 consensus
Probab=95.96  E-value=0.014  Score=36.68  Aligned_cols=83  Identities=19%  Similarity=0.269  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHHCCCCC
Q ss_conf             367898899740120012246305654138999999719786570021--85409330005---9999999998067899
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS---IPLSLSLENQRKPFQK  305 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~g~i~~  305 (325)
                      ...++++|+++|++++|||+|=+|-+-..---...+.|||+++|+-.+  .--+||=-.||   +.+.|.+.+++   +.
T Consensus       294 ~~A~~~al~~agl~~~Did~~EinEAFA~~~l~~~~~lgi~~~~vN~~GGaiA~GHP~GATG~rl~~~l~~~L~~---~~  370 (393)
T PRK07800        294 ANAIKKALAREGISVDDLDLVEINEAFAAVALASTRELGVDPEKVNVNGGAIALGHPIGMSGARIVLHLALELKR---RG  370 (393)
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH---CC
T ss_conf             999999999849985547767760356888999999829988881898418873988020289999999999998---09


Q ss_pred             CCEEEEEEECCC
Q ss_conf             989999986155
Q gi|254780489|r  306 GEKILTISCRRG  317 (325)
Q Consensus       306 Gd~vll~~~G~G  317 (325)
                      | +..+++.-.|
T Consensus       371 ~-~~g~~s~c~g  381 (393)
T PRK07800        371 G-GVGAAALCGG  381 (393)
T ss_pred             C-CEEEEEECCC
T ss_conf             9-8899996343


No 139
>PRK07025 consensus
Probab=95.86  E-value=0.0092  Score=37.92  Aligned_cols=70  Identities=17%  Similarity=0.208  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             367898899740120012246305654138999999719786570021--85409330005---99999999980
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ...++++|+++|++++|||.|=+|-+-....-.+.+.||++.+|+-.+  .--+||=-.||   +.+.|-+.+++
T Consensus       294 v~A~~k~l~~agl~~~Did~~EinEAFA~~~l~~~~~lg~d~~~vN~~GGaiA~GHP~GATGar~~~~l~~~L~~  368 (393)
T PRK07025        294 VPASRRCLERAGWTVGDLDLMEINEAFAAQALAVHKQMGWDTSKVNVNGGAIAIGHPIGASGCRILVTLLHEMQK  368 (393)
T ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999999859983346602013677888999999848994657988548872898031289999999999987


No 140
>PRK08234 consensus
Probab=95.76  E-value=0.014  Score=36.72  Aligned_cols=70  Identities=21%  Similarity=0.267  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             367898899740120012246305654138999999719786570021--85409330005---99999999980
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ...++++|+++|++++|||.|=+|-+-....-.+.+.|+++++|+-.+  .--+||=-.||   +.+.|.+.+++
T Consensus       300 ~~A~~~~L~ragl~~~Did~~EinEAFA~~~l~~~~~l~i~~~kvN~~GGaiAlGHP~GaTGarl~~~l~~~L~~  374 (400)
T PRK08234        300 VFATRKALRRAGLTVDDIDLVELNEAFAAQALACIRELGLDRAKVNVNGGAIALGHPLGASGARILTTLIYEMRR  374 (400)
T ss_pred             HHHHHHHHHHCCCCHHHCCEEEEEHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999998749984228756760777888999999848978877898548874888032189999999999998


No 141
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=95.73  E-value=0.024  Score=35.18  Aligned_cols=75  Identities=13%  Similarity=0.116  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHHCCCCCC
Q ss_conf             67898899740120012246305654138999999719786570021--85409330005---99999999980678999
Q gi|254780489|r  232 QSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS---IPLSLSLENQRKPFQKG  306 (325)
Q Consensus       232 ~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~g~i~~G  306 (325)
                      ..++++|+++|++++|||.|=+|-+=...--.+.+.|+|+.+|+-.+  .--+||=-.||   +...|.+.+++...+-|
T Consensus       289 ~A~~~~L~ragl~~~did~~EinEAFA~~~l~~~~~l~id~~kvN~~GGaiA~GHP~GaTGar~~~~l~~~L~~~~~~~g  368 (388)
T PRK06366        289 PATRKLLEKQNKSIDYYDLVEHNEAFSIASIIVRDQLKIDNERFNVNGGAVAIGHPIGNSGSRIIVTLINALKTRHMKTG  368 (388)
T ss_pred             HHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             99999999859985551378860888999999998629991108888258874786210389999999999998199989


No 142
>pfam08392 FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein. The members of this family are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region featured in this family contains the active site residues, as well as motifs involved in substrate binding.
Probab=95.70  E-value=0.057  Score=32.74  Aligned_cols=83  Identities=13%  Similarity=0.216  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHCCCCCCCCEEEECC----CCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             03678988997401200122463056----54138999999719786570021854093300059999999998067899
Q gi|254780489|r  230 MAQSAKQSLRKSDLQPQDINRFIPHQ----ANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQRKPFQK  305 (325)
Q Consensus       230 ~~~~i~~~l~~~gl~~~did~~i~Hq----~~~~~~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~  305 (325)
                      +-.+++++|+++|++|.|||.+|..-    +...+-..+..+.+...+---.+|   |-+|.+.-.++.+.+.+-=+..|
T Consensus        87 ~f~avd~Lf~ktgv~P~dIdiLVvNcSlf~PtPSLsamivNrykmR~di~s~nL---sGMGCSAglIsIdLAk~lL~~~~  163 (290)
T pfam08392        87 MFGAVDELFAKTGVRPRDIGILVVNCSLFNPTPSLSAMIVNRYKMRGDIKSYNL---SGMGCSAGLISIDLAKDLLQVHP  163 (290)
T ss_pred             HHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEECC---CCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             999999999973998768999999677888885289999886068643006336---67651134757999999998489


Q ss_pred             CCEEEEEEEC
Q ss_conf             9899999861
Q gi|254780489|r  306 GEKILTISCR  315 (325)
Q Consensus       306 Gd~vll~~~G  315 (325)
                      |...|+++.+
T Consensus       164 ns~ALVvSTE  173 (290)
T pfam08392       164 NTYALVVSTE  173 (290)
T ss_pred             CCEEEEEEEE
T ss_conf             9659999853


No 143
>PRK08242 acetyl-CoA acetyltransferase; Validated
Probab=95.63  E-value=0.046  Score=33.33  Aligned_cols=70  Identities=19%  Similarity=0.269  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             367898899740120012246305654138999999719786570021--85409330005---99999999980
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ...++++|+++|++++|||.|=+|.+-....-.+.+.|++|.+|+-.+  ---+||=-.||   +.+.|.+.+++
T Consensus       303 v~A~~k~L~~agl~~~did~~EinEAFA~q~la~~~~l~id~~kvN~~GGaiAlGHP~GaSGariv~~l~~~L~~  377 (402)
T PRK08242        303 VPATRKALAKAGLTISDIDLFELNEAFASVVLRFMKALGIPHDKVNVNGGAIAMGHPLGATGAMILGTVLDELER  377 (402)
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999999869984568878860666888999999849988884998667874888035589999999999987


No 144
>pfam02803 Thiolase_C Thiolase, C-terminal domain. Thiolase is reported to be structurally related to beta-ketoacyl synthase (pfam00109), and also chalcone synthase.
Probab=95.61  E-value=0.037  Score=33.98  Aligned_cols=70  Identities=24%  Similarity=0.276  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHH--HHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             3678988997401200122463056541389999997197865700218--5409330005---99999999980
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSL--KDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l--~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ...++++|+++|++++|||+|=+|.+-....-.+.+.|++|.||+-.+-  =-+||=-.||   +...|.+.+++
T Consensus        25 ~~A~~~lL~r~gl~~~Did~~EinEAFA~~~l~~~~~l~id~ekvN~~GGaiAlGHP~GaSGarlv~~l~~~L~~   99 (123)
T pfam02803        25 AYAIPKALKKAGLTVNDIDLFEINEAFAAQALAVAKDLGIDPEKVNVNGGAIALGHPLGASGARILVTLLHELKR   99 (123)
T ss_pred             HHHHHHHHHHCCCCHHHCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999999829985546645641456777899999719892014898873442788466248999999999998


No 145
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=95.61  E-value=0.024  Score=35.21  Aligned_cols=70  Identities=21%  Similarity=0.241  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCH---HHHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             367898899740120012246305654138999999719786---570021--85409330005---99999999980
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSK---RIMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~---~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ...++++|+++|++++|||.|=+|-+=....-.+.+.|+|++   ||+-.+  .--+||=-.||   +.+.|.+.+++
T Consensus       301 v~A~~~~L~~agl~~~Did~~EinEAFA~q~la~~~~l~i~~~d~~kvN~~GGaiAlGHP~GaTGarl~~~l~~~L~~  378 (404)
T PRK06205        301 VPATEKALARAGLTLDDIDLIELNEAFAAQVLAVLKEWGFSDADEERLNVNGSGISLGHPVGATGGRILATLLRELQR  378 (404)
T ss_pred             HHHHHHHHHHCCCCHHHCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999999859983107744631477888999999839898873408988548874888120189999999999997


No 146
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=95.55  E-value=0.024  Score=35.19  Aligned_cols=70  Identities=16%  Similarity=0.186  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             367898899740120012246305654138999999719786570021--85409330005---99999999980
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ...++++|+++|++++|||.|=+|.+-....-.+.+.|+++++|+-.+  .=-+||=-.||   +.+.|.+.+++
T Consensus       294 ~~A~~k~L~~agl~~~Did~~EinEAFA~q~l~~~~~l~id~~kvN~~GGaiAlGHP~GATGarl~~~l~~~L~~  368 (392)
T PRK05656        294 VSATRRCLDKAGWSLAELDLIEANEAFAAQSLAVGKELGWDAAKVNVNGGAIALGHPIGASGCRVLVTLLHEMIR  368 (392)
T ss_pred             HHHHHHHHHHCCCCHHCCCEEEECCHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999999849983108777852167899999999848985766888548871888031379999999999987


No 147
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=95.52  E-value=0.031  Score=34.51  Aligned_cols=70  Identities=19%  Similarity=0.235  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHH--HHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             3678988997401200122463056541389999997197865--70021--85409330005---99999999980
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKR--IMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~--~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ...++++|+++|++++|||.|=+|-+-..-.-...+.||++.+  |+-.+  .--+||=-.||   +.+.|.+.+++
T Consensus       299 v~A~~~~L~~agl~~~Did~~EinEAFA~~~l~~~~~lgl~~d~~kvN~~GGaiA~GHP~GATGarl~~~l~~~L~~  375 (401)
T PRK08131        299 VEAIKKALARAGLTLDDMDIIEINEAFASQVLSCLKGLGVDFDDPRVNPNGGAIAVGHPLGASGARLALTAARELQR  375 (401)
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999975998123877785026688899999980999887808988668873888020089999999999987


No 148
>pfam02803 Thiolase_C Thiolase, C-terminal domain. Thiolase is reported to be structurally related to beta-ketoacyl synthase (pfam00109), and also chalcone synthase.
Probab=95.49  E-value=0.032  Score=34.38  Aligned_cols=92  Identities=15%  Similarity=0.100  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9999999864301322234425884310023688743221121002386--------33342101231012567657887
Q gi|254780489|r   58 AIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQS--------GAIDLTGACAGFLYALVMADSYI  129 (325)
Q Consensus        58 a~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~--------~~~di~~~C~g~l~aL~~A~~~i  129 (325)
                      .+.|++++|++++++++|||++-..-..     -+.+-...++||++..        .++.==.||+|.-..+.++..+-
T Consensus        24 p~~A~~~lL~r~gl~~~Did~~EinEAF-----A~~~l~~~~~l~id~ekvN~~GGaiAlGHP~GaSGarlv~~l~~~L~   98 (123)
T pfam02803        24 PAYAIPKALKKAGLTVNDIDLFEINEAF-----AAQALAVAKDLGIDPEKVNVNGGAIALGHPLGASGARILVTLLHELK   98 (123)
T ss_pred             HHHHHHHHHHHCCCCHHHCCEEEECHHH-----HHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             9999999999829985546645641456-----77789999971989201489887344278846624899999999999


Q ss_pred             HCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             43885058862012244446222443432544200112205
Q gi|254780489|r  130 NSHQKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAVVLAP  170 (325)
Q Consensus       130 ~~g~~~vLVv~~e~~S~~~d~~d~~~~~lfGDgA~A~il~~  170 (325)
                      +.+.++.++..|-                -|..+.|+++++
T Consensus        99 ~~~~~~G~as~C~----------------gGG~g~A~llER  123 (123)
T pfam02803        99 RRGGKYGLATLCI----------------GGGQGVAMIIER  123 (123)
T ss_pred             HHCCCEEEEEEEC----------------CCCEEEEEEEEC
T ss_conf             8399999999703----------------556088999979


No 149
>PRK09051 beta-ketothiolase; Provisional
Probab=95.49  E-value=0.021  Score=35.59  Aligned_cols=70  Identities=19%  Similarity=0.256  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             367898899740120012246305654138999999719786570021--85409330005---99999999980
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ...++++|+++|++++|||.|=+|.+=....-.+.+.|+++++|+-.+  .--+||=-.||   +.+.|.+.+++
T Consensus       295 ~~A~~~~L~ragl~~~Did~~EinEAFA~q~l~~~~~l~~d~~kvN~~GGaiAlGHP~GaTGar~~~~l~~~L~~  369 (394)
T PRK09051        295 VPATQKALERAGLTVDDLDVIEANEAFAAQACAVTRELGLDPAKVNPNGSGISLGHPVGATGAIITVKALYELQR  369 (394)
T ss_pred             HHHHHHHHHHCCCCHHHCCEEEEEHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999999839987779888851465999999998709987874998658863988023489999999999987


No 150
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=95.46  E-value=0.034  Score=34.23  Aligned_cols=70  Identities=16%  Similarity=0.160  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHH--HHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             3678988997401200122463056541389999997197865--70021--85409330005---99999999980
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKR--IMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~--~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ...++++|+++|++++|||.|=+|.+=....-.+.+.||+++|  |+-.+  .=-+||=-.||   +...|.+.+++
T Consensus       300 ~~A~~~~L~~agl~~~DiD~~EinEAFA~q~l~~~~~lg~~~d~~kvN~~GGaiAlGHP~GATGari~~~l~~~L~~  376 (401)
T PRK09050        300 APATRKLLARLGLTIDQFDVIELNEAFAAQGLAVLRQLGLADDDARVNPNGGAIALGHPLGMSGARLVLTALHQLER  376 (401)
T ss_pred             HHHHHHHHHHCCCCHHHCCEEEECHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999985998544878997024377799999984999885507999678875888022289999999999998


No 151
>PRK07851 acetyl-CoA acetyltransferase; Provisional
Probab=95.44  E-value=0.023  Score=35.33  Aligned_cols=114  Identities=19%  Similarity=0.240  Sum_probs=67.7

Q ss_pred             CCCCCEEEEEECCCCCCCCCCCEEE-EEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Q ss_conf             2544200112205765444531135-532136776527830698667654455655232245145434320100367898
Q gi|254780489|r  158 IFGDAAGAVVLAPSPLKDKSGILGI-ELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQ  236 (325)
Q Consensus       158 lfGDgA~A~il~~~~~~~~~~il~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~  236 (325)
                      ...|||+|+||..++...+.++-.. ++.+.+..          ...                +..+-.+   -...+++
T Consensus       260 ~~~DGAAavll~se~~a~~~gl~Plari~~~~~~----------g~d----------------P~~m~~~---Pv~A~~~  310 (405)
T PRK07851        260 PLNDGAAAVVIMSDTKARELGLTPLARIVSTGVS----------GLS----------------PEIMGLG---PIEASKQ  310 (405)
T ss_pred             CCCCHHHHHHHCCHHHHHHCCCCCEEEEEECCCC----------CCC----------------HHHHCCC---HHHHHHH
T ss_conf             6543469988727999997799815999954005----------648----------------7884618---8999999


Q ss_pred             HHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             899740120012246305654138999999719786570021--85409330005---99999999980
Q gi|254780489|r  237 SLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       237 ~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      +|+++|++++|||.|=+|-+=....-.+.+.|||+++|+-.+  .--+||=-.||   +...|-+.+++
T Consensus       311 ~L~~agl~~~Did~~EinEAFA~q~l~~~~~lgid~~kvNv~GGaiAlGHP~GAsGarl~~~l~~~L~~  379 (405)
T PRK07851        311 ALARAGMTIDDIDLVEINEAFAVQVLGSARELGIDEDKLNVSGGAIALGHPFGMTGARITTTLLNNLQT  379 (405)
T ss_pred             HHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999769980248755640667888999999848988881998558873887031179999999999998


No 152
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed
Probab=95.22  E-value=0.036  Score=34.07  Aligned_cols=70  Identities=19%  Similarity=0.222  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCC---CHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             3678988997401200122463056541389999997197---86570021--85409330005---99999999980
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGL---SKRIMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi---~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ...++++|+++|++++|||.|=+|-+=....-.+.+.||+   +.+|+-.+  .--+||=-.||   +.+.|.+.+++
T Consensus       285 ~~A~~~~L~~agl~~~Did~~EinEAFA~q~l~~~~~lg~~~~~~~kvN~~GGaiA~GHP~GATGarl~~~l~~~L~~  362 (387)
T PRK08947        285 VPATQKALKRAGLSIADIDVFELNEAFAAQSLPCLKDLGLLDKMDEKVNLNGGAIALGHPLGCSGARISTTLLNLMER  362 (387)
T ss_pred             HHHHHHHHHHCCCCHHHCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999999849986557842212566877999999859988983357899658873888110289999999999998


No 153
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=95.21  E-value=0.038  Score=33.88  Aligned_cols=70  Identities=17%  Similarity=0.200  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             367898899740120012246305654138999999719786570021--85409330005---99999999980
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ...++++|+++|++++|||.|=+|-+-....-.+.+.||++++|+-.+  .--+||=-.||   +.+.|.+.+++
T Consensus       283 ~~A~~~~l~~agl~~~Did~~EinEAFA~~~l~~~~~lg~~~~kvN~~GGaia~GHP~GATG~r~~~~l~~~L~~  357 (382)
T PRK07801        283 IPATRYALDKTGLTIDDIDVVEINEAFAPVVMAWLKETGADPEKVNPNGGAIALGHPLGATGAKLMTTLLHELER  357 (382)
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999999849981138855740366888999999828992435888439871988032799999999999987


No 154
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=95.15  E-value=0.056  Score=32.81  Aligned_cols=76  Identities=16%  Similarity=0.145  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHH--HHCCCCCCCH---HHHHHHHHHHHCCCCC
Q ss_conf             3678988997401200122463056541389999997197865700218--5409330005---9999999998067899
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSL--KDFGNSSSAS---IPLSLSLENQRKPFQK  305 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l--~~~GN~~sAs---i~~~L~~~~~~g~i~~  305 (325)
                      ...++++|+++|++.+|||.|=+|.+-....-.+.+.|+++.+|+-.+-  =-+||=-.||   +.+.|.+.+++...+-
T Consensus       293 ~~A~~k~L~~agl~~~Did~~EinEAFA~q~l~~~~~l~~d~~kvN~~GGaiAlGHP~GaTGarl~~~l~~~L~~~~~~~  372 (392)
T PRK06633        293 VPASQKALSKAGWSVNDLEVIEVNEAFAAQSIYVNREMKWDMEKVNINGGAIAIGHPIGASGGRVLITLIHNLRRAKAKK  372 (392)
T ss_pred             HHHHHHHHHHCCCCHHHCCEEEEEHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf             99999999984998310867886036688899999870997888689855887478811158999999999998719998


Q ss_pred             C
Q ss_conf             9
Q gi|254780489|r  306 G  306 (325)
Q Consensus       306 G  306 (325)
                      |
T Consensus       373 G  373 (392)
T PRK06633        373 G  373 (392)
T ss_pred             E
T ss_conf             9


No 155
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=95.10  E-value=0.064  Score=32.41  Aligned_cols=13  Identities=46%  Similarity=0.567  Sum_probs=5.4

Q ss_pred             HHHHHHCCCCHHH
Q ss_conf             9999971978657
Q gi|254780489|r  262 QKVCEKIGLSKRI  274 (325)
Q Consensus       262 ~~~~~~lgi~~~~  274 (325)
                      +.+.++.|+.++.
T Consensus       233 ~~~L~~~gl~~~d  245 (326)
T PRK12879        233 KQVLEKAGLTKDD  245 (326)
T ss_pred             HHHHHHCCCCHHH
T ss_conf             9999985999778


No 156
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=95.07  E-value=0.12  Score=30.70  Aligned_cols=55  Identities=18%  Similarity=0.080  Sum_probs=20.9

Q ss_pred             HHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC-CCCEEEEEEECCCCC
Q ss_conf             9999971978657002185409330005999999999806789-998999998615510
Q gi|254780489|r  262 QKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQRKPFQ-KGEKILTISCRRGND  319 (325)
Q Consensus       262 ~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~~~~g~i~-~Gd~vll~~~G~G~s  319 (325)
                      +.+.++-|++.+.+-..+   -|-.+.-+.-.+.+.++.-.+. |-|+++..----|-|
T Consensus       279 ~~~L~~~gl~~~dId~~v---pHQAn~ri~~~v~~~l~~~g~~ip~ek~~~~v~~~GNT  334 (378)
T PRK06816        279 LELVDKRRLDPDAIDHFL---PHYSSEYFREKIVELLAKAGLMIPEEKWFTNLATVGNT  334 (378)
T ss_pred             HHHHHHCCCCHHHCCEEE---CCCCHHHHHHHHHHHHHHCCCCCCHHHHEECCCCCCCH
T ss_conf             999998499989988881---26105999999999987535899866616014232707


No 157
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=94.87  E-value=0.069  Score=32.19  Aligned_cols=70  Identities=14%  Similarity=0.175  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHH--HHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             3678988997401200122463056541389999997197865700218--5409330005---99999999980
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSL--KDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l--~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ...++.+|+++|++.+|||.|=+|.+=....-.+.+.|+|+.+|+-.+-  =-+||=-.||   +.+.|.+.+++
T Consensus       293 v~A~~~~L~ragl~~~Did~~EinEAFA~q~l~~~~~l~id~~kvN~~GGaiAlGHP~GaSGarl~~~l~~~L~~  367 (392)
T PRK07108        293 VFAVPKLLKQAGLKVDDIDLWELNEAFAVQVLYCRDTLGIPMDRLNVNGGAIAVGHPYGVSGARLTGHALIEGKR  367 (392)
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999999759973357734640577888999998829889992998667875888121189999999999997


No 158
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=94.82  E-value=0.04  Score=33.76  Aligned_cols=69  Identities=22%  Similarity=0.222  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             67898899740120012246305654138999999719786570021--85409330005---99999999980
Q gi|254780489|r  232 QSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       232 ~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ..++++|+++|++++|||.+=+|-+-....-...+.||++++|+-.+  .--+||=-.||   +...|.+.+++
T Consensus       295 ~A~~~~l~~agl~~~Did~~Ei~EAFA~~~l~~~~~lg~~~~~vN~~GG~ia~GHP~GATG~r~v~~l~~~L~~  368 (393)
T PRK08235        295 YAINALLEKTGKTIEDIDLFEINEAFAAVALASTEIAGIDPEKVNVNGGAVALGHPIGASGARIIVTLIYELKR  368 (393)
T ss_pred             HHHHHHHHHCCCCHHHCCEEEECHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999849983216732410488999999999719985765898538873888120189999999999998


No 159
>PRK06689 consensus
Probab=94.64  E-value=0.046  Score=33.36  Aligned_cols=87  Identities=22%  Similarity=0.269  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHH--HHCCCCCCCH---HHHHHHHHHHHCCCCC
Q ss_conf             3678988997401200122463056541389999997197865700218--5409330005---9999999998067899
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSL--KDFGNSSSAS---IPLSLSLENQRKPFQK  305 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l--~~~GN~~sAs---i~~~L~~~~~~g~i~~  305 (325)
                      ...++++|+++|++.+|||.|=+|.+=....-.+.+.||+++||+-.+-  =-+||=-.||   +...|.+.+++...+.
T Consensus       292 v~A~~k~L~ragl~~~Did~~EinEAFA~q~l~~~~~lgid~~kvN~~GGaiAlGHP~GaTGarl~~~l~~~L~~~~~~~  371 (391)
T PRK06689        292 APAIRKGLEKVDWSLEDADLLEINEAFAAQYLAVEKELGLDREKVNVNGSGVGLGHPIGCTGARITVSLIHELKRRGLEK  371 (391)
T ss_pred             HHHHHHHHHHCCCCHHHCCEEEEEHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf             99999999985998645888996156688999999985897988899866887488812147999999999999809998


Q ss_pred             CCEEEEEEECCC
Q ss_conf             989999986155
Q gi|254780489|r  306 GEKILTISCRRG  317 (325)
Q Consensus       306 Gd~vll~~~G~G  317 (325)
                      |=--++++.|.|
T Consensus       372 gl~t~C~ggG~G  383 (391)
T PRK06689        372 GIASLCVGGGIG  383 (391)
T ss_pred             EEEEECCCCCHH
T ss_conf             999964302321


No 160
>PRK06025 acetyl-CoA acetyltransferase; Provisional
Probab=94.60  E-value=0.11  Score=30.97  Aligned_cols=76  Identities=20%  Similarity=0.266  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHH--HHCCCCCCCH---HHHHHHHHHHHCCCCC
Q ss_conf             3678988997401200122463056541389999997197865700218--5409330005---9999999998067899
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSL--KDFGNSSSAS---IPLSLSLENQRKPFQK  305 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l--~~~GN~~sAs---i~~~L~~~~~~g~i~~  305 (325)
                      ...++++|+++|++++|||.|=+|.+-......+.+.|+++++|+-.+-  =-+||=-.||   +...|.+.+++..-+-
T Consensus       318 v~Ai~~~L~r~gl~~~Did~~EiNEAFA~q~la~~~~l~ld~~kvNv~GGAiAlGHP~GASGari~~tL~~~L~~~~~~~  397 (417)
T PRK06025        318 VPAAKKVLAKAGLTKDDIDLWEINEAFAVVAEKFIRDLDLDRDKVNVNGGAIALGHPIGATGSILIGTVLDELERRGLKR  397 (417)
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf             99999999876997135777886067899999999970997988899867887388811558999999999998729999


Q ss_pred             C
Q ss_conf             9
Q gi|254780489|r  306 G  306 (325)
Q Consensus       306 G  306 (325)
                      |
T Consensus       398 G  398 (417)
T PRK06025        398 G  398 (417)
T ss_pred             E
T ss_conf             9


No 161
>PRK07661 acetyl-CoA acetyltransferase; Provisional
Probab=94.59  E-value=0.046  Score=33.34  Aligned_cols=69  Identities=22%  Similarity=0.270  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHH--HHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             678988997401200122463056541389999997197865700218--5409330005---99999999980
Q gi|254780489|r  232 QSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSL--KDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       232 ~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l--~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ..++++|+++|++.+|||.|=+|.+=....-.+.+.|+|+++|+-.+-  =-+||=-.||   +.+.|.+.+++
T Consensus       286 ~A~~k~L~ragl~~~DiD~~EinEAFA~q~l~~~~~l~id~~kvN~~GGaiAlGHP~GatGarl~~tl~~~L~~  359 (384)
T PRK07661        286 AAIPKALKLAGLELSDIGLFELNEAFASQSIQVIRELGLDEEKVNVNGGAIALGHPLGCTGAKLTLSLIHEMKR  359 (384)
T ss_pred             HHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999869986677755650667888999999839988883998658874888034479999999999998


No 162
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=94.56  E-value=0.062  Score=32.49  Aligned_cols=15  Identities=20%  Similarity=0.315  Sum_probs=6.8

Q ss_pred             HHHHHHHHCCCCHHH
Q ss_conf             899999971978657
Q gi|254780489|r  260 IIQKVCEKIGLSKRI  274 (325)
Q Consensus       260 ~~~~~~~~lgi~~~~  274 (325)
                      .++.+.++.|+.++.
T Consensus       225 ~i~~~L~~~gl~~~d  239 (319)
T PRK09352        225 VAREALEAAGLTPED  239 (319)
T ss_pred             HHHHHHHHCCCCHHH
T ss_conf             999999874998323


No 163
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=94.48  E-value=0.13  Score=30.44  Aligned_cols=13  Identities=8%  Similarity=0.199  Sum_probs=4.9

Q ss_pred             HHHHHHHCCCCCC
Q ss_conf             9889974012001
Q gi|254780489|r  235 KQSLRKSDLQPQD  247 (325)
Q Consensus       235 ~~~l~~~gl~~~d  247 (325)
                      +.+.++.|+.++.
T Consensus       257 ~~~~~~lgi~~~k  269 (320)
T cd00830         257 EAVAKRLGLPEEK  269 (320)
T ss_pred             HHHHHHHCCCHHH
T ss_conf             9999980969899


No 164
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=94.48  E-value=0.084  Score=31.63  Aligned_cols=16  Identities=0%  Similarity=0.030  Sum_probs=6.9

Q ss_pred             HHHHHHHHHCCCCCCC
Q ss_conf             7898899740120012
Q gi|254780489|r  233 SAKQSLRKSDLQPQDI  248 (325)
Q Consensus       233 ~i~~~l~~~gl~~~di  248 (325)
                      .++.+.++.++.++.+
T Consensus       258 ~~~~i~~~lgl~~~k~  273 (327)
T CHL00203        258 ILEAVADRLSIPHSKM  273 (327)
T ss_pred             HHHHHHHHHCCCHHHH
T ss_conf             9999999819797886


No 165
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=94.42  E-value=0.066  Score=32.34  Aligned_cols=76  Identities=14%  Similarity=0.195  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHHCCCCC
Q ss_conf             367898899740120012246305654138999999719786570021--85409330005---9999999998067899
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS---IPLSLSLENQRKPFQK  305 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~g~i~~  305 (325)
                      ...++++|+++||+++|||+|=+|.+=....-.+.+.|++|++|+-.+  .=-+||=-.||   +...|-+.+++...+-
T Consensus       300 v~A~~k~L~~agl~~~Did~~EinEAFA~~~l~~~~~l~id~~kvN~~GGaiAlGHP~GasGari~~tl~~~L~~~~~~~  379 (399)
T PRK09052        300 IEAIPAALKQAGLKQDDLDWIELNEAFAAQSLAVIRDLGLDPSKVNPLGGAIALGHPLGATGAIRTATVVHGLRRTNLKY  379 (399)
T ss_pred             HHHHHHHHHHCCCCHHHCCEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf             99999999983998667787886034388899999982997989699877887488703109999999999998709998


Q ss_pred             C
Q ss_conf             9
Q gi|254780489|r  306 G  306 (325)
Q Consensus       306 G  306 (325)
                      |
T Consensus       380 G  380 (399)
T PRK09052        380 G  380 (399)
T ss_pred             E
T ss_conf             9


No 166
>TIGR02845 spore_V_AD stage V sporulation protein AD; InterPro: IPR010894   This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation ..
Probab=94.37  E-value=0.095  Score=31.31  Aligned_cols=80  Identities=25%  Similarity=0.407  Sum_probs=46.4

Q ss_pred             CHHHHHHHC-CCHHHHHHHHHHHHCCCCC--CCCEEEECC-CCCHHH-HHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             145434320-1003678988997401200--122463056-541389-99999719786570021854093300059999
Q gi|254780489|r  219 GADIFYNAV-KIMAQSAKQSLRKSDLQPQ--DINRFIPHQ-ANSRII-QKVCEKIGLSKRIMVNSLKDFGNSSSASIPLS  293 (325)
Q Consensus       219 g~~v~~~~~-~~~~~~i~~~l~~~gl~~~--did~~i~Hq-~~~~~~-~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~  293 (325)
                      |.+-||.+- +.|.++|+.+|+|++|+.+  |||+|+-=- -|..+- ...++.|+||   +   |--||=+++..=-++
T Consensus        42 ge~SwEkAEr~lm~~Av~~aL~Ka~l~~~PP~vD~~LAGDLLNQ~~~anFvAR~L~iP---f---lGLygACsTs~E~L~  115 (331)
T TIGR02845        42 GEDSWEKAERKLMEDAVNLALKKANLKKDPPDVDFFLAGDLLNQIITANFVARELGIP---F---LGLYGACSTSMETLA  115 (331)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC---C---EECCCHHHHHHHHHH
T ss_conf             7201899999999999999875358712787211120103666789998988745888---2---340213578999999


Q ss_pred             HHHHHHHCCCC
Q ss_conf             99999806789
Q gi|254780489|r  294 LSLENQRKPFQ  304 (325)
Q Consensus       294 L~~~~~~g~i~  304 (325)
                      |.-.+=+|.+-
T Consensus       116 ~gA~lv~GGfA  126 (331)
T TIGR02845       116 LGAMLVDGGFA  126 (331)
T ss_pred             HHHHHHHCCCH
T ss_conf             99999832002


No 167
>PRK06840 hypothetical protein; Validated
Probab=94.33  E-value=0.071  Score=32.12  Aligned_cols=16  Identities=19%  Similarity=0.399  Sum_probs=8.9

Q ss_pred             HHHHHHHHCCCCHHHH
Q ss_conf             8999999719786570
Q gi|254780489|r  260 IIQKVCEKIGLSKRIM  275 (325)
Q Consensus       260 ~~~~~~~~lgi~~~~~  275 (325)
                      .++...++-|+..+.+
T Consensus       242 ~i~~~L~~~gl~~~DI  257 (337)
T PRK06840        242 VIREALRKSGYTPKDI  257 (337)
T ss_pred             HHHHHHHHCCCCHHHC
T ss_conf             9999999849995786


No 168
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=94.23  E-value=0.067  Score=32.27  Aligned_cols=69  Identities=14%  Similarity=0.104  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHH--HHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             678988997401200122463056541389999997197865700218--5409330005---99999999980
Q gi|254780489|r  232 QSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSL--KDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       232 ~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l--~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ..++++|+++|++++|||.|=+|.+=....-.+.+.|+++++|+-.+-  =-+||=-.||   +.+.|.+.+++
T Consensus       289 ~A~~k~L~~agl~~~Did~~EinEAFAaq~l~~~~~l~~d~~kvN~~GGaiAlGHP~GasGaRi~~~l~~~L~~  362 (387)
T PRK07850        289 QSTAKVLEKAGMKIGDIDLVEINEAFASVVLSWAQVHEPDMDRVNVNGGAIALGHPVGSTGARLITTALHELER  362 (387)
T ss_pred             HHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999859983468767860577889999998739979897998648875888121379999999999987


No 169
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=93.99  E-value=0.19  Score=29.39  Aligned_cols=17  Identities=12%  Similarity=0.192  Sum_probs=8.8

Q ss_pred             HHHHHHHHHCCCCHHHH
Q ss_conf             38999999719786570
Q gi|254780489|r  259 RIIQKVCEKIGLSKRIM  275 (325)
Q Consensus       259 ~~~~~~~~~lgi~~~~~  275 (325)
                      +.++.+.++.|+..+.+
T Consensus       244 ~~~~~~L~~~gl~~~dI  260 (339)
T PRK09258        244 DTWEAFLQQLGWSVEQV  260 (339)
T ss_pred             HHHHHHHHHCCCCHHHC
T ss_conf             99999999839998998


No 170
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed
Probab=93.87  E-value=0.072  Score=32.07  Aligned_cols=69  Identities=16%  Similarity=0.126  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHH----------HCC-------CCHHHHHHHH--HHCCCCCCCH---
Q ss_conf             67898899740120012246305654138999999----------719-------7865700218--5409330005---
Q gi|254780489|r  232 QSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCE----------KIG-------LSKRIMVNSL--KDFGNSSSAS---  289 (325)
Q Consensus       232 ~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~----------~lg-------i~~~~~~~~l--~~~GN~~sAs---  289 (325)
                      ..++++|+++|++++|||.|=+|.+=..-.-.+.+          .||       ++.+|+-.+-  =-+||=-.||   
T Consensus       321 ~Ai~k~L~ragl~~~Did~~EinEAFAaq~la~~~~l~~~~f~~~~lg~~~~~g~id~~kvN~~GGaIAlGHP~GaTGar  400 (436)
T PRK08963        321 YATPLALERAGLTLADLTLIDMHEAFAAQTLANLQMFASDRFAREKLGRSQAIGEVDMSKFNVLGGSIAYGHPFAATGAR  400 (436)
T ss_pred             HHHHHHHHHCCCCHHHCCEEEEHHHCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHCCCCCCHHHHCCCCCCCHHH
T ss_conf             99999999849998999877751235788999999852025667751443333559787758885388757881225899


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999980
Q gi|254780489|r  290 IPLSLSLENQR  300 (325)
Q Consensus       290 i~~~L~~~~~~  300 (325)
                      +.+.|.+.+++
T Consensus       401 l~~tl~~~L~~  411 (436)
T PRK08963        401 MITQTLHELRR  411 (436)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999998


No 171
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=93.86  E-value=0.1  Score=31.08  Aligned_cols=26  Identities=19%  Similarity=0.111  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf             99999999864301322234425884
Q gi|254780489|r   57 IAIQAGDIALRNANIKKDSISLTLLA   82 (325)
Q Consensus        57 la~~Aa~~aL~~a~~~~~dId~ii~~   82 (325)
                      ...++.+++|++++++|+|||++..+
T Consensus       146 ~~~~~i~~al~~agl~~~dId~v~~H  171 (254)
T cd00327         146 GLARAARKALEGAGLTPSDIDYVEAH  171 (254)
T ss_pred             HHHHHHHHHHHHCCCCHHHCCEEEEC
T ss_conf             99999999999839986452579978


No 172
>pfam02801 Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain. The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=93.86  E-value=0.16  Score=29.85  Aligned_cols=77  Identities=14%  Similarity=0.220  Sum_probs=51.1

Q ss_pred             CHHHHHHHHHHHHCCCCCCCCEEEECCCCCHH-----HHHHHHHCCCCHHHHH-H-HHHHCCCCCCCHHHHHHHH---HH
Q ss_conf             00367898899740120012246305654138-----9999997197865700-2-1854093300059999999---99
Q gi|254780489|r  229 IMAQSAKQSLRKSDLQPQDINRFIPHQANSRI-----IQKVCEKIGLSKRIMV-N-SLKDFGNSSSASIPLSLSL---EN  298 (325)
Q Consensus       229 ~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~-----~~~~~~~lgi~~~~~~-~-~l~~~GN~~sAsi~~~L~~---~~  298 (325)
                      ...++++++|++++++++|||++-.|--+-..     .+.+.+.++=.....+ . +=..+||+-+|+-.+.+..   .+
T Consensus        26 ~~~~~i~~Al~~agi~p~~I~~i~aHgtgT~~gD~~E~~ai~~~f~~~~~~~~i~S~Ks~~GH~~~AsG~~~li~~~l~l  105 (117)
T pfam02801        26 AQARAIRAALADAGLDPEDVDYVEAHGTGTPLGDPIEAEALKAVFGPGRRPLPVGSVKSNIGHLEAAAGVAGLIKAVLAL  105 (117)
T ss_pred             HHHHHHHHHHHHHCCCHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999999909899897989875376854379999999999663778876777411535563767999999999999


Q ss_pred             HHCCCCC
Q ss_conf             8067899
Q gi|254780489|r  299 QRKPFQK  305 (325)
Q Consensus       299 ~~g~i~~  305 (325)
                      +.+.+.|
T Consensus       106 ~~g~ipp  112 (117)
T pfam02801       106 RHGVIPP  112 (117)
T ss_pred             HCCCCCC
T ss_conf             7697388


No 173
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=93.70  E-value=0.073  Score=32.05  Aligned_cols=76  Identities=22%  Similarity=0.312  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHH----HH------HHHHCCC-------CHHHHHHH--HHHCCCCCCCH--
Q ss_conf             3678988997401200122463056541389----99------9997197-------86570021--85409330005--
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRII----QK------VCEKIGL-------SKRIMVNS--LKDFGNSSSAS--  289 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~----~~------~~~~lgi-------~~~~~~~~--l~~~GN~~sAs--  289 (325)
                      ...++++|+++|++++|||.|=+|-+-....    +.      ..+.||+       +.+|+-.+  .--+||=-.||  
T Consensus       310 v~A~~k~L~~agl~~~DiD~~EinEAFAaq~la~~~~~~~~~~~~~~lG~~~~~~~id~~kvN~~GGaiAlGHP~GaTGa  389 (426)
T PRK08170        310 VHAATPLLQRHGLTLEDIDYWEINEAFAAQVLACLAAWADEEYCREQLGLDGALGELDRERLNVDGGAIALGHPVGASGA  389 (426)
T ss_pred             HHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHH
T ss_conf             99999999980998676552434046689999999874001356776076533456981228988548874777210389


Q ss_pred             -HHHHHHHHHHHCCCCCC
Q ss_conf             -99999999980678999
Q gi|254780489|r  290 -IPLSLSLENQRKPFQKG  306 (325)
Q Consensus       290 -i~~~L~~~~~~g~i~~G  306 (325)
                       +.+.|.+.+++...+-|
T Consensus       390 rl~~~l~~~L~~~~~~~g  407 (426)
T PRK08170        390 RIVLHLLHALKRRGTKRG  407 (426)
T ss_pred             HHHHHHHHHHHHHCCCEE
T ss_conf             999999999998199989


No 174
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=93.60  E-value=0.07  Score=32.15  Aligned_cols=16  Identities=0%  Similarity=-0.049  Sum_probs=7.6

Q ss_pred             HHHHHHHHHCCCCCCC
Q ss_conf             7898899740120012
Q gi|254780489|r  233 SAKQSLRKSDLQPQDI  248 (325)
Q Consensus       233 ~i~~~l~~~gl~~~di  248 (325)
                      .++.+.++.|+.++.+
T Consensus       260 ~~~~v~~~lgl~~ek~  275 (327)
T PRK05963        260 IVDKVCETLGIPRAKA  275 (327)
T ss_pred             HHHHHHHHCCCCHHHH
T ss_conf             9999999829797870


No 175
>PRK06690 acetyl-CoA acetyltransferase; Provisional
Probab=93.54  E-value=0.093  Score=31.37  Aligned_cols=69  Identities=14%  Similarity=0.213  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH--HHHCCCCCCCH---HHHHHHHHHHH
Q ss_conf             67898899740120012246305654138999999719786570021--85409330005---99999999980
Q gi|254780489|r  232 QSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNS--LKDFGNSSSAS---IPLSLSLENQR  300 (325)
Q Consensus       232 ~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~--l~~~GN~~sAs---i~~~L~~~~~~  300 (325)
                      ..++++|+++|++++|||.|=.|.+=....-.+.+.|+|+.+|+-.+  .--+||=-.||   +...|.+.+++
T Consensus       262 ~A~~~~L~~agl~~~Did~~EinEAFA~q~l~~~~~l~id~~kvN~~GGaiAlGHP~GasGaRi~~tl~~~L~~  335 (361)
T PRK06690        262 FAVNKLLNEMNMKVEDIDYFEINEAFASKVVACAKELQIPYEKLNVNGGAIALGHPYGASGAMLVTRLFYQAKR  335 (361)
T ss_pred             HHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999759971226511202677888999999838988884998558874888034589999999999987


No 176
>PRK07855 lipid-transfer protein; Provisional
Probab=93.45  E-value=0.28  Score=28.24  Aligned_cols=14  Identities=0%  Similarity=0.031  Sum_probs=5.1

Q ss_pred             HHHHHHCCCCCCCC
Q ss_conf             99864301322234
Q gi|254780489|r   63 DIALRNANIKKDSI   76 (325)
Q Consensus        63 ~~aL~~a~~~~~dI   76 (325)
                      ++-+++.|.+.+++
T Consensus       155 ~rym~~yG~t~E~l  168 (386)
T PRK07855        155 RRYMHEYGATSEDF  168 (386)
T ss_pred             HHHHHHHCCCHHHH
T ss_conf             99999979599999


No 177
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=93.17  E-value=0.32  Score=27.84  Aligned_cols=12  Identities=25%  Similarity=0.105  Sum_probs=4.8

Q ss_pred             HHHHHCCCCHHH
Q ss_conf             999971978657
Q gi|254780489|r  263 KVCEKIGLSKRI  274 (325)
Q Consensus       263 ~~~~~lgi~~~~  274 (325)
                      .+.++.|+..+.
T Consensus       238 ~~L~~~gl~~~D  249 (329)
T PRK07204        238 KLLMDTGYSLAD  249 (329)
T ss_pred             HHHHHCCCCHHH
T ss_conf             999871999788


No 178
>PRK06158 thiolase; Provisional
Probab=93.00  E-value=0.097  Score=31.23  Aligned_cols=13  Identities=23%  Similarity=0.524  Sum_probs=10.5

Q ss_pred             CCCCEEEEEEEEE
Q ss_conf             6662099999973
Q gi|254780489|r    2 IKSSSCILGFGHA   14 (325)
Q Consensus         2 ~~~~~~I~g~g~~   14 (325)
                      ++.++.|+|+|..
T Consensus         6 l~~rvAIvGvG~t   18 (384)
T PRK06158          6 LRGRTAIVGAATA   18 (384)
T ss_pred             CCCCEEEEEEEEC
T ss_conf             7883899975551


No 179
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2  has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=92.86  E-value=0.36  Score=27.52  Aligned_cols=20  Identities=5%  Similarity=0.033  Sum_probs=11.6

Q ss_pred             CCHHHHHHHHHHHHCCCCCC
Q ss_conf             10036789889974012001
Q gi|254780489|r  228 KIMAQSAKQSLRKSDLQPQD  247 (325)
Q Consensus       228 ~~~~~~i~~~l~~~gl~~~d  247 (325)
                      +.++-.+...++..|+.+++
T Consensus       278 eaFa~~~l~~~e~lGl~~~g  297 (375)
T cd00829         278 DCFTIAELLALEDLGFCEKG  297 (375)
T ss_pred             CCCHHHHHHHHHHCCCCCCC
T ss_conf             57669999999980999777


No 180
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=92.73  E-value=0.34  Score=27.71  Aligned_cols=80  Identities=15%  Similarity=0.102  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHH--HHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             6789889974012001224630565413899999971978657002--18540933000599999999980678999899
Q gi|254780489|r  232 QSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVN--SLKDFGNSSSASIPLSLSLENQRKPFQKGEKI  309 (325)
Q Consensus       232 ~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~--~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~v  309 (325)
                      ..++++|+++|++++|||.+=.|-+-....-...+.||++++++-.  -+--+||=-.|+=...+.++..+=+-+.|.+.
T Consensus       289 ~A~~~al~~agl~~~Did~~EiheaFa~~~l~~~~~lg~~~~~vN~~GG~ia~GHP~GATG~~~~~~l~~~L~~~~g~~g  368 (386)
T cd00751         289 PAIPKALKRAGLTLDDIDLIEINEAFAAQALACLKELGLDPEKVNVNGGAIALGHPLGASGARIVVTLLHELKRRGGRYG  368 (386)
T ss_pred             HHHHHHHHHCCCCHHHCCEEEEEHHHHHHHHHHHHHHCCCHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf             99999999839984448843510566878999999829877667888559860998021589999999999988389889


Q ss_pred             EE
Q ss_conf             99
Q gi|254780489|r  310 LT  311 (325)
Q Consensus       310 ll  311 (325)
                      +.
T Consensus       369 l~  370 (386)
T cd00751         369 LA  370 (386)
T ss_pred             EE
T ss_conf             99


No 181
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=92.69  E-value=0.65  Score=25.85  Aligned_cols=43  Identities=23%  Similarity=0.304  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHH
Q ss_conf             3678988997401200122463056541389999997197865
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKR  273 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~  273 (325)
                      ...++++|+++|++++|||.+=+|-+=...--...+.||+.++
T Consensus       272 ~~A~~~al~~aGl~~~Did~~Ei~eaFa~~~l~~~e~lg~~~~  314 (393)
T cd00826         272 IEAARKALEKAGLGIGDLDLIEAHDAFAANACATNEALGLCPE  314 (393)
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCC
T ss_conf             9999999998299800166456324234999999998098912


No 182
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.62  E-value=0.27  Score=28.34  Aligned_cols=29  Identities=21%  Similarity=0.076  Sum_probs=16.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             22444462224434325442001122057
Q gi|254780489|r  143 LLSRRINLEDKDTAIIFGDAAGAVVLAPS  171 (325)
Q Consensus       143 ~~S~~~d~~d~~~~~lfGDgA~A~il~~~  171 (325)
                      ..|..++.+......-+||-+--+++++.
T Consensus       216 s~StL~~dse~~Mgwdv~d~G~~~vlSrd  244 (356)
T COG3424         216 SFSTLYPDSEDIMGWDVGDQGLKVVLSRD  244 (356)
T ss_pred             CCCCCCCCCCCCCCEEECCCCEEEEECCC
T ss_conf             54546886210011530488479997573


No 183
>PRK08371 consensus
Probab=92.43  E-value=0.1  Score=31.11  Aligned_cols=10  Identities=30%  Similarity=0.547  Sum_probs=7.2

Q ss_pred             CEEEEEEEEE
Q ss_conf             2099999973
Q gi|254780489|r    5 SSCILGFGHA   14 (325)
Q Consensus         5 ~~~I~g~g~~   14 (325)
                      +++|+|+|.-
T Consensus         3 ~v~IVg~~~T   12 (388)
T PRK08371          3 KVIIVGVGMT   12 (388)
T ss_pred             CEEEEEEEEC
T ss_conf             1899996034


No 184
>PRK08256 lipid-transfer protein; Provisional
Probab=92.35  E-value=0.11  Score=30.86  Aligned_cols=22  Identities=14%  Similarity=0.246  Sum_probs=12.8

Q ss_pred             CCEEEEEEEEEC---CCCCCCHHHH
Q ss_conf             620999999735---8861388899
Q gi|254780489|r    4 SSSCILGFGHAV---PNQCIHNSII   25 (325)
Q Consensus         4 ~~~~I~g~g~~l---P~~~i~n~~l   25 (325)
                      |+++|+|+|.-=   |....+-.+|
T Consensus         1 nkV~IvGvg~T~f~k~~~~~~~~~L   25 (391)
T PRK08256          1 NKVFVAGVGMTPFEKPGASWDYPDM   25 (391)
T ss_pred             CEEEEEEEEECCCCCCCCCCCHHHH
T ss_conf             9099997420453689999999999


No 185
>PRK09268 acetyl-CoA acetyltransferase; Provisional
Probab=92.33  E-value=0.062  Score=32.53  Aligned_cols=75  Identities=19%  Similarity=0.210  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCCHHHH----------HHHHHCC-------CCHHHHHHH--HHHCCCCCCCH---
Q ss_conf             6789889974012001224630565413899----------9999719-------786570021--85409330005---
Q gi|254780489|r  232 QSAKQSLRKSDLQPQDINRFIPHQANSRIIQ----------KVCEKIG-------LSKRIMVNS--LKDFGNSSSAS---  289 (325)
Q Consensus       232 ~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~----------~~~~~lg-------i~~~~~~~~--l~~~GN~~sAs---  289 (325)
                      ..++++|+++|++++|||.|=+|.+=....-          .+.+.||       |+.+|+-.+  -=-+||=-.||   
T Consensus       314 ~A~~~~L~ragl~~~Did~~EinEAFAaq~la~~~~~~~~~~~~~~lgl~~~~~~id~~kvN~~GGaiAlGHP~GaSGar  393 (428)
T PRK09268        314 YAVPRLLARNGLTLQDFDFYEIHEAFASQVLATLKAWESEEYCRERLGLDAPLGSIDRSKLNVNGSSLAAGHPFAATGGR  393 (428)
T ss_pred             HHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCHHHHCCCCCCCHHH
T ss_conf             99999999859997984799874667889999988640046678862765323568776548885388748880334899


Q ss_pred             HHHHHHHHHHHCCCCCC
Q ss_conf             99999999980678999
Q gi|254780489|r  290 IPLSLSLENQRKPFQKG  306 (325)
Q Consensus       290 i~~~L~~~~~~g~i~~G  306 (325)
                      +.+.|.+.+++...+.|
T Consensus       394 iv~~l~~~L~~~~~~~G  410 (428)
T PRK09268        394 IVATLAKLLAEKGSGRG  410 (428)
T ss_pred             HHHHHHHHHHHHCCCEE
T ss_conf             99999999998399989


No 186
>PRK08257 acetyl-CoA acetyltransferase; Validated
Probab=91.67  E-value=0.41  Score=27.17  Aligned_cols=91  Identities=16%  Similarity=0.173  Sum_probs=56.0

Q ss_pred             CCHHHHHHHHHHHHCCCCCCCCEE----EECCCCCHHHHHHHHHCCCCHHHH---HH---HHHHCCCCCCCHHHHHHHHH
Q ss_conf             100367898899740120012246----305654138999999719786570---02---18540933000599999999
Q gi|254780489|r  228 KIMAQSAKQSLRKSDLQPQDINRF----IPHQANSRIIQKVCEKIGLSKRIM---VN---SLKDFGNSSSASIPLSLSLE  297 (325)
Q Consensus       228 ~~~~~~i~~~l~~~gl~~~did~~----i~Hq~~~~~~~~~~~~lgi~~~~~---~~---~l~~~GN~~sAsi~~~L~~~  297 (325)
                      ..+..+.+++|+.+|+..+|||+|    +|    ....+..++.|||+.+..   ..   -|..+|--+..-+.-++.++
T Consensus       294 ~a~~~~~~~al~~ag~~~~di~~~DlYSCF----P~av~~~~~~lgl~~~~~~r~lTvTGGl~f~GGp~NnY~~hsia~m  369 (502)
T PRK08257        294 PAIRAAGARALALAGLGIDDIDAFDLYSCF----PSAVQMAARELGLPLDDDPRPLTVTGGLTFFGGPGNNYVTHSIAEM  369 (502)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEHHHCC----HHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf             899999999999809980014611034216----3899999997399966788860340675556787503789999999


Q ss_pred             HHHCCCCCCCEEEEEEECCCCCCCC
Q ss_conf             9806789998999998615510201
Q gi|254780489|r  298 NQRKPFQKGEKILTISCRRGNDRGI  322 (325)
Q Consensus       298 ~~~g~i~~Gd~vll~~~G~G~s~ga  322 (325)
                      .++=|-+||+..|+.+-|.=+|--+
T Consensus       370 v~~lR~~~~~~GLvtangG~lTKh~  394 (502)
T PRK08257        370 VERLRANPGRRGLVTANGGYLTKHS  394 (502)
T ss_pred             HHHHHHCCCCEEEEEECCCEEEEEE
T ss_conf             9999718997389980246264224


No 187
>PRK08142 acetyl-CoA acetyltransferase; Provisional
Probab=91.26  E-value=0.16  Score=29.76  Aligned_cols=18  Identities=28%  Similarity=0.349  Sum_probs=12.9

Q ss_pred             CCCCEEEEEEEEECCCCCC
Q ss_conf             6662099999973588613
Q gi|254780489|r    2 IKSSSCILGFGHAVPNQCI   20 (325)
Q Consensus         2 ~~~~~~I~g~g~~lP~~~i   20 (325)
                      ++.+++|+|+|. .|-.+.
T Consensus         3 l~gk~aIvG~G~-tp~~r~   20 (388)
T PRK08142          3 IKGKAYIVGAYE-HPTRKA   20 (388)
T ss_pred             CCCEEEEEEEEE-CCCCCC
T ss_conf             787099995434-566238


No 188
>PRK04262 hypothetical protein; Provisional
Probab=91.23  E-value=0.76  Score=25.38  Aligned_cols=15  Identities=0%  Similarity=0.005  Sum_probs=6.5

Q ss_pred             HHHHHHHHHCCCCCC
Q ss_conf             789889974012001
Q gi|254780489|r  233 SAKQSLRKSDLQPQD  247 (325)
Q Consensus       233 ~i~~~l~~~gl~~~d  247 (325)
                      .++.+.++.|+.++.
T Consensus       241 ii~~~~k~Lgi~~ek  255 (346)
T PRK04262        241 FPLRAAKMLGFTKEQ  255 (346)
T ss_pred             HHHHHHHHCCCCHHH
T ss_conf             999999982999899


No 189
>PRK07516 acetyl-CoA acetyltransferase; Provisional
Probab=90.42  E-value=0.17  Score=29.67  Aligned_cols=91  Identities=12%  Similarity=0.050  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHH----------------HHHHH----HHHCCCCCCCHH
Q ss_conf             3678988997401200122463056541389999997197865----------------70021----854093300059
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKR----------------IMVNS----LKDFGNSSSASI  290 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~----------------~~~~~----l~~~GN~~sAsi  290 (325)
                      ...++++|+++|++++|||.+-.|-+-....-.+.|.||+.++                +.+.|    .--+||-..++=
T Consensus       263 ~~A~~~al~~AGl~~~DiD~~Ei~daFa~~~l~~~E~lGl~~~Ge~~~~~~~g~~~~~G~~pvN~~GG~ls~Ghp~gatG  342 (389)
T PRK07516        263 RRAWQRALEQAGVTLDDLSFVETHDCFTIAELIEYEAMGLAPPGQGARAIREGWTAKDGRLPVNPSGGLKAKGHPIGATG  342 (389)
T ss_pred             HHHHHHHHHHCCCCHHHCCEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCEECCCHHHHHCCCCCCHHH
T ss_conf             99999999984998888244543343379999999984999777257787658866799843717841876698101369


Q ss_pred             HHHHHHHHH----H---CCCCCCCEEEEEEECCCCCCC
Q ss_conf             999999998----0---678999899999861551020
Q gi|254780489|r  291 PLSLSLENQ----R---KPFQKGEKILTISCRRGNDRG  321 (325)
Q Consensus       291 ~~~L~~~~~----~---g~i~~Gd~vll~~~G~G~s~g  321 (325)
                      ...+.++..    +   .+++.-+..+..+.|...+..
T Consensus       343 ~~~~~e~~~QLrg~ag~~QV~~a~~~l~~~~GG~~~~~  380 (389)
T PRK07516        343 VSMHVLAAMQLTGEAGGMQIPGAKLAGVFNMGGAAVAN  380 (389)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHE
T ss_conf             99999999996235367778987789995778676716


No 190
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=90.06  E-value=0.3  Score=28.03  Aligned_cols=13  Identities=23%  Similarity=0.498  Sum_probs=10.6

Q ss_pred             CCCCEEEEEEEEE
Q ss_conf             6662099999973
Q gi|254780489|r    2 IKSSSCILGFGHA   14 (325)
Q Consensus         2 ~~~~~~I~g~g~~   14 (325)
                      ++++++|+|+|..
T Consensus         8 ~~~~VaIvG~G~T   20 (393)
T PRK06065          8 FKRRVAVIGAGMT   20 (393)
T ss_pred             CCCCEEEEEEEEE
T ss_conf             3498899986570


No 191
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=90.01  E-value=0.21  Score=29.09  Aligned_cols=83  Identities=10%  Similarity=0.072  Sum_probs=32.5

Q ss_pred             HHHHHHHHHCCCCCCCCEEEECCCC-CHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             7898899740120012246305654-138999999719786570021854093300059999999998067899989999
Q gi|254780489|r  233 SAKQSLRKSDLQPQDINRFIPHQAN-SRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQRKPFQKGEKILT  311 (325)
Q Consensus       233 ~i~~~l~~~gl~~~did~~i~Hq~~-~~~~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll  311 (325)
                      .+++++.+......-++-.+-|--+ .-+.+.+.-.|.+...+++-++    |.-..+.-+.|+..-.+.+-.+-+.++.
T Consensus       326 Ai~~vfg~~~~~v~S~Ks~iGH~~~AaG~~e~i~~~lal~~~~ipPt~----n~~~~dp~~~l~~v~~~~~~~~~~~al~  401 (418)
T PRK07910        326 AINNALGGHRPAVYAPKSALGHSVGAVGAVESILTVLALRDGVIPPTL----NLKNLDPEIDLDVVAGEPRPGNYRYAIN  401 (418)
T ss_pred             HHHHHHCCCCCCEECCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             999986699984128124342038999999999999997249758899----9899999999543889876799889999


Q ss_pred             EEECCCCC
Q ss_conf             98615510
Q gi|254780489|r  312 ISCRRGND  319 (325)
Q Consensus       312 ~~~G~G~s  319 (325)
                      -+||-|-+
T Consensus       402 nsfGfGG~  409 (418)
T PRK07910        402 NSFGFGGH  409 (418)
T ss_pred             ECCCCCCE
T ss_conf             45055810


No 192
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=89.70  E-value=0.44  Score=26.92  Aligned_cols=40  Identities=10%  Similarity=0.112  Sum_probs=17.4

Q ss_pred             CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC---CCCCCCCCC
Q ss_conf             322234425884310023688743221121002---386333421
Q gi|254780489|r   71 IKKDSISLTLLATSTPDHLLPPSSPLITHRLGL---MQSGAIDLT  112 (325)
Q Consensus        71 ~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~---~~~~~~di~  112 (325)
                      |...+.|++|++.+-- .+.|-. ..-.+.+|+   ..|..||-+
T Consensus       158 I~~G~~d~~i~gg~~~-~~~~~~-~~~f~~~~~ls~~~~rPFd~~  200 (379)
T PRK05952        158 IQTGQCQRVIAGAVES-PITPLT-LAGFQKMGALAKTGAYPFDRQ  200 (379)
T ss_pred             HHCCCCCEEEEEEEEE-ECCHHH-HHHHHHCCCCCCCCCCCCCCC
T ss_conf             9839988798678765-248276-899986578344676745468


No 193
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=89.65  E-value=0.44  Score=26.96  Aligned_cols=40  Identities=15%  Similarity=0.031  Sum_probs=16.8

Q ss_pred             CCCCCCHHHHHHHHHHHH-------CCCCCCCEEEEEEECCCCCCCC
Q ss_conf             933000599999999980-------6789998999998615510201
Q gi|254780489|r  283 GNSSSASIPLSLSLENQR-------KPFQKGEKILTISCRRGNDRGI  322 (325)
Q Consensus       283 GN~~sAsi~~~L~~~~~~-------g~i~~Gd~vll~~~G~G~s~ga  322 (325)
                      ||-..|+=...+.++.++       .+++.-...|..+.|.|.....
T Consensus       334 g~p~ga~G~~~v~Ea~~QLrG~Ag~rQV~~a~~al~~~~GG~~~~~~  380 (391)
T PRK08313        334 SNPIGASGMIRFAEAALQVMGKAGEHQVPGARKALGHAYGGGSQFFS  380 (391)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEE
T ss_conf             89872679999999999965776566489751899955677121699


No 194
>PRK12578 acetyl-CoA acetyltransferase; Provisional
Probab=89.64  E-value=0.33  Score=27.78  Aligned_cols=22  Identities=9%  Similarity=0.232  Sum_probs=12.6

Q ss_pred             CCEEEEEEEEECCCCC--CCHHHH
Q ss_conf             6209999997358861--388899
Q gi|254780489|r    4 SSSCILGFGHAVPNQC--IHNSII   25 (325)
Q Consensus         4 ~~~~I~g~g~~lP~~~--i~n~~l   25 (325)
                      +++.|+|+|..=..+.  .|-.||
T Consensus         1 R~vaIvG~g~t~~gr~~~~s~~eL   24 (385)
T PRK12578          1 RRVAVIGVGNSKFGKRDDVSIQEL   24 (385)
T ss_pred             CCEEEEEEEEEECCCCCCCCHHHH
T ss_conf             969999976622410799799999


No 195
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=89.59  E-value=0.32  Score=27.87  Aligned_cols=81  Identities=7%  Similarity=0.035  Sum_probs=35.0

Q ss_pred             HHHHHHHHCCCCCCCCEEEECCCC-CHHHHHHHHHCCCCHHHH-HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             898899740120012246305654-138999999719786570-021854093300059999999998067899989999
Q gi|254780489|r  234 AKQSLRKSDLQPQDINRFIPHQAN-SRIIQKVCEKIGLSKRIM-VNSLKDFGNSSSASIPLSLSLENQRKPFQKGEKILT  311 (325)
Q Consensus       234 i~~~l~~~gl~~~did~~i~Hq~~-~~~~~~~~~~lgi~~~~~-~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll  311 (325)
                      +++++.+ .+...-++-.+-|.-+ .-+++.+...|-+..+.+ +-+    -|...-+.-+.++...++.+-.+-+.+|.
T Consensus       303 i~~vfg~-~~pvss~Ks~~GH~lgaaG~~e~~~~~l~l~~~~~iPpt----~n~~~~dp~~~~~~v~~~~~~~~~~~~l~  377 (395)
T PRK09185        303 VAAVFGD-TVPCSSTKPLTGHTLGAAGAVEAAICWLALNRDLPLPGH----VNDGQPDPALPPLYLVENRQALALRYVMS  377 (395)
T ss_pred             HHHHHCC-CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             9998488-862467641104307889999999999999828985998----99999898887654688875689889999


Q ss_pred             EEECCCCC
Q ss_conf             98615510
Q gi|254780489|r  312 ISCRRGND  319 (325)
Q Consensus       312 ~~~G~G~s  319 (325)
                      .+||-|-.
T Consensus       378 nsfGFGG~  385 (395)
T PRK09185        378 NSFAFGGS  385 (395)
T ss_pred             ECCCCCCE
T ss_conf             56148836


No 196
>PRK07937 lipid-transfer protein; Provisional
Probab=89.37  E-value=0.29  Score=28.15  Aligned_cols=11  Identities=36%  Similarity=0.824  Sum_probs=9.0

Q ss_pred             CCEEEEEEEEE
Q ss_conf             62099999973
Q gi|254780489|r    4 SSSCILGFGHA   14 (325)
Q Consensus         4 ~~~~I~g~g~~   14 (325)
                      ++|.|+|+|..
T Consensus         2 rdVaIVGvG~t   12 (352)
T PRK07937          2 RDVAVVGFAHA   12 (352)
T ss_pred             CCEEEEEEEEC
T ss_conf             85799996406


No 197
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=89.32  E-value=0.56  Score=26.25  Aligned_cols=16  Identities=6%  Similarity=0.017  Sum_probs=8.9

Q ss_pred             HHHHHHHHHCCCCCCC
Q ss_conf             7898899740120012
Q gi|254780489|r  233 SAKQSLRKSDLQPQDI  248 (325)
Q Consensus       233 ~i~~~l~~~gl~~~di  248 (325)
                      .++.+.++.|+..+.+
T Consensus       274 iie~i~k~Lgl~~ek~  289 (353)
T PRK12880        274 LVDCIKEELKLNDDKV  289 (353)
T ss_pred             HHHHHHHHCCCCHHHH
T ss_conf             9999999809897870


No 198
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=89.32  E-value=0.28  Score=28.22  Aligned_cols=86  Identities=9%  Similarity=0.048  Sum_probs=35.2

Q ss_pred             HHHHHHHHHCCCCCCCCEEEECCCCC-HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             78988997401200122463056541-38999999719786570021854093300059999999998067899989999
Q gi|254780489|r  233 SAKQSLRKSDLQPQDINRFIPHQANS-RIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQRKPFQKGEKILT  311 (325)
Q Consensus       233 ~i~~~l~~~gl~~~did~~i~Hq~~~-~~~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll  311 (325)
                      .+++++...++....++-.+-|-.+. -+.+.+.-.|-+....++-+    -|.-..+.-+.|+....+.+-.+-.+++.
T Consensus       310 Ai~~~fg~~~~pv~S~K~~iGH~~~AaG~~~~i~~ll~l~~g~ippt----~n~~~~~p~~~l~~v~~~~~~~~~~~al~  385 (399)
T cd00832         310 ALAAVFGPRGVPVTAPKTMTGRLYAGGAPLDVATALLALRDGVIPPT----VNVTDVPPAYGLDLVTGRPRPAALRTALV  385 (399)
T ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             99999669998789954221106999999999999999835961989----99899998888523789987899899999


Q ss_pred             EEECCCCCCCC
Q ss_conf             98615510201
Q gi|254780489|r  312 ISCRRGNDRGI  322 (325)
Q Consensus       312 ~~~G~G~s~ga  322 (325)
                      -+||-|-+--.
T Consensus       386 nsfGfGG~Na~  396 (399)
T cd00832         386 LARGRGGFNSA  396 (399)
T ss_pred             ECCCCCCEEEE
T ss_conf             44056803268


No 199
>pfam08541 ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal. This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EC:2.3.1.41, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria.
Probab=89.09  E-value=0.17  Score=29.71  Aligned_cols=68  Identities=22%  Similarity=0.290  Sum_probs=39.9

Q ss_pred             HHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC-CC----CCCCCCCHHHHHHHHHHHHCCC----CEE
Q ss_conf             64301322234425884310023688743221121002386333-42----1012310125676578874388----505
Q gi|254780489|r   66 LRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAI-DL----TGACAGFLYALVMADSYINSHQ----KPV  136 (325)
Q Consensus        66 L~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~-di----~~~C~g~l~aL~~A~~~i~~g~----~~v  136 (325)
                      |+++|++++|||+++........     --.++++||++.-..+ .+    |.++++-..+|..+   ++.+.    .++
T Consensus         1 L~~~g~~~~dId~~i~Hq~~~~~-----~~~i~~~lgi~~~k~~~~~~~~GN~~sasip~~L~~~---~~~~~i~~Gd~v   72 (90)
T pfam08541         1 LEKAGLTPDDIDWFVPHQANLRI-----IDAVAKRLGLPPEKVVVNLDRYGNTSAASIPLALDEA---VEEGKLKPGDLV   72 (90)
T ss_pred             CCCCCCCHHHCCEEEECCCCHHH-----HHHHHHHHCCCHHHCEEHHHCCCCCCCCHHHHHHHHH---HHCCCCCCCCEE
T ss_conf             94404997999999978888899-----9999998197913250324403776202399999999---981999999989


Q ss_pred             EEEEE
Q ss_conf             88620
Q gi|254780489|r  137 LIIAA  141 (325)
Q Consensus       137 LVv~~  141 (325)
                      ++++.
T Consensus        73 ll~~~   77 (90)
T pfam08541        73 LLVGF   77 (90)
T ss_pred             EEEEE
T ss_conf             99987


No 200
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=89.06  E-value=0.28  Score=28.26  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEEEEE
Q ss_conf             9999999986430132223442588431
Q gi|254780489|r   57 IAIQAGDIALRNANIKKDSISLTLLATS   84 (325)
Q Consensus        57 la~~Aa~~aL~~a~~~~~dId~ii~~s~   84 (325)
                      .|+.-|.++|+.     .+.|.+|++.+
T Consensus       101 ~Ai~~A~~~i~~-----G~~d~aivgg~  123 (332)
T cd00825         101 HALSLAADAVQN-----GKQDIVLAGGS  123 (332)
T ss_pred             HHHHHHHHHHHH-----CCCCEEEEEEE
T ss_conf             999999999983-----89987462031


No 201
>PRK06157 acetyl-CoA acetyltransferase; Validated
Probab=87.46  E-value=0.51  Score=26.50  Aligned_cols=16  Identities=38%  Similarity=0.518  Sum_probs=12.0

Q ss_pred             CCCCEEEEEEEEECCC
Q ss_conf             6662099999973588
Q gi|254780489|r    2 IKSSSCILGFGHAVPN   17 (325)
Q Consensus         2 ~~~~~~I~g~g~~lP~   17 (325)
                      |++++.|+|+|..=-.
T Consensus         5 l~~kvaIvGvG~t~~g   20 (400)
T PRK06157          5 IKDKVAILGMGCSKFG   20 (400)
T ss_pred             CCCCEEEEEEEEECCC
T ss_conf             8898899985572055


No 202
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=86.73  E-value=1.2  Score=24.09  Aligned_cols=32  Identities=13%  Similarity=0.226  Sum_probs=14.6

Q ss_pred             CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHH
Q ss_conf             8874322112100238-63334210123101256
Q gi|254780489|r   90 LPPSSPLITHRLGLMQ-SGAIDLTGACAGFLYAL  122 (325)
Q Consensus        90 ~P~~a~~v~~~Lg~~~-~~~~di~~~C~g~l~aL  122 (325)
                      .|...+++.+.|.+++ -..++|-.| +|+.+|+
T Consensus        61 ~P~~~a~ml~~L~l~~~~~VLeIGtG-sGY~tAl   93 (214)
T PRK13942         61 AIHMVAIMCELLDLDEGQKVLEIGTG-SGYHAAV   93 (214)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCC-CCHHHHH
T ss_conf             49999999997279999979996799-5299999


No 203
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.01  E-value=0.56  Score=26.26  Aligned_cols=14  Identities=21%  Similarity=0.069  Sum_probs=7.8

Q ss_pred             CCEEEEEEECCCCC
Q ss_conf             98999998615510
Q gi|254780489|r  306 GEKILTISCRRGND  319 (325)
Q Consensus       306 Gd~vll~~~G~G~s  319 (325)
                      .+.+|.-+||-|-+
T Consensus       389 ~~~~lsnSfGFGG~  402 (412)
T COG0304         389 VRAALSNSFGFGGT  402 (412)
T ss_pred             CEEEEECCCCCCCC
T ss_conf             02898615046872


No 204
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=85.45  E-value=0.91  Score=24.89  Aligned_cols=20  Identities=10%  Similarity=0.189  Sum_probs=10.4

Q ss_pred             HHHHHH-HCCCCEEEEEEECC
Q ss_conf             657887-43885058862012
Q gi|254780489|r  124 MADSYI-NSHQKPVLIIAANL  143 (325)
Q Consensus       124 ~A~~~i-~~g~~~vLVv~~e~  143 (325)
                      .|...+ +.|..++.|+.+|-
T Consensus       115 ~Ar~~L~~lG~~NV~vv~GDG  135 (317)
T PRK13943        115 IAKRNVERLGIENVIFVCGDG  135 (317)
T ss_pred             HHHHHHHHCCCCCEEEEECCC
T ss_conf             999999977998649997998


No 205
>KOG1394 consensus
Probab=84.35  E-value=0.68  Score=25.71  Aligned_cols=50  Identities=20%  Similarity=0.147  Sum_probs=18.5

Q ss_pred             HHHCCCHHHHHHHHHHHHCCCCCCCCEEE-ECCCCCHHHHHHHHH---CCCCHHHH
Q ss_conf             43201003678988997401200122463-056541389999997---19786570
Q gi|254780489|r  224 YNAVKIMAQSAKQSLRKSDLQPQDINRFI-PHQANSRIIQKVCEK---IGLSKRIM  275 (325)
Q Consensus       224 ~~~~~~~~~~i~~~l~~~gl~~~did~~i-~Hq~~~~~~~~~~~~---lgi~~~~~  275 (325)
                      +++.+.-.+.+.++|. -|++- |--|+- ||+-+.-....+.+.   -|+.++++
T Consensus       268 EHA~~RgA~I~AE~lG-ygls~-Da~HiT~P~~dG~Ga~~am~raL~~Agl~pe~i  321 (440)
T KOG1394         268 EHAKKRGAPIYAEVLG-YGLSS-DAYHITSPDPDGAGAVLAMERALKDAGLSPEDI  321 (440)
T ss_pred             HHHHHCCCCEEHHHHC-CCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHC
T ss_conf             8898749915277645-75256-634347899873058999999998749995655


No 206
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=83.71  E-value=1.3  Score=23.98  Aligned_cols=32  Identities=9%  Similarity=0.195  Sum_probs=14.6

Q ss_pred             CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHH
Q ss_conf             8874322112100238-63334210123101256
Q gi|254780489|r   90 LPPSSPLITHRLGLMQ-SGAIDLTGACAGFLYAL  122 (325)
Q Consensus        90 ~P~~a~~v~~~Lg~~~-~~~~di~~~C~g~l~aL  122 (325)
                      .|.+-+++.+.|.++. -..++|-.|| |+.+|+
T Consensus        57 ~P~~~a~ml~~L~~~~~~~VLeIGtGs-GY~tAl   89 (205)
T PRK13944         57 APHMVAMMCELIEPRPGMKILEVGTGS-GYQAAV   89 (205)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCC-CHHHHH
T ss_conf             799999999970689999899978985-199999


No 207
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=83.54  E-value=1.3  Score=23.81  Aligned_cols=22  Identities=14%  Similarity=0.271  Sum_probs=9.9

Q ss_pred             CCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf             8874322112100238-633342
Q gi|254780489|r   90 LPPSSPLITHRLGLMQ-SGAIDL  111 (325)
Q Consensus        90 ~P~~a~~v~~~Lg~~~-~~~~di  111 (325)
                      .|.+.+++.+.|.++. -..++|
T Consensus        58 ~P~~~a~ml~~L~l~~g~~VLeI   80 (205)
T pfam01135        58 APHMHAMMLELLELKPGMRVLEI   80 (205)
T ss_pred             HHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             38999999997078999989996


No 208
>pfam02801 Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain. The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=83.27  E-value=0.44  Score=26.97  Aligned_cols=46  Identities=20%  Similarity=0.200  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEEE-EEEECCCCCCCCCCCCCCCC
Q ss_conf             999999999864301322234425884-31002368874322112100
Q gi|254780489|r   56 DIAIQAGDIALRNANIKKDSISLTLLA-TSTPDHLLPPSSPLITHRLG  102 (325)
Q Consensus        56 ~la~~Aa~~aL~~a~~~~~dId~ii~~-s~t~d~~~P~~a~~v~~~Lg  102 (325)
                      +-..++.++||++++++|+|||+|-.. +.|+ .-.+.-+.-+.+.++
T Consensus        25 ~~~~~~i~~Al~~agi~p~~I~~i~aHgtgT~-~gD~~E~~ai~~~f~   71 (117)
T pfam02801        25 PAQARAIRAALADAGLDPEDVDYVEAHGTGTP-LGDPIEAEALKAVFG   71 (117)
T ss_pred             HHHHHHHHHHHHHHCCCHHHCCEEEEECCCCC-CCCHHHHHHHHHHHC
T ss_conf             99999999999990989989798987537685-437999999999966


No 209
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=83.09  E-value=0.53  Score=26.43  Aligned_cols=13  Identities=8%  Similarity=0.202  Sum_probs=6.4

Q ss_pred             CCCCCCEEEEEEE
Q ss_conf             2223442588431
Q gi|254780489|r   72 KKDSISLTLLATS   84 (325)
Q Consensus        72 ~~~dId~ii~~s~   84 (325)
                      .-.+.|.+|++.+
T Consensus       190 r~G~~D~~iaGG~  202 (425)
T PRK06501        190 RRGETDRALCIAT  202 (425)
T ss_pred             HCCCCCEEEEEEE
T ss_conf             7589888999332


No 210
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=82.70  E-value=1.4  Score=23.63  Aligned_cols=33  Identities=18%  Similarity=0.241  Sum_probs=16.3

Q ss_pred             CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHH
Q ss_conf             68874322112100238-63334210123101256
Q gi|254780489|r   89 LLPPSSPLITHRLGLMQ-SGAIDLTGACAGFLYAL  122 (325)
Q Consensus        89 ~~P~~a~~v~~~Lg~~~-~~~~di~~~C~g~l~aL  122 (325)
                      ..|.+.+++.+.|.+++ -..++|-.|| |+.+|+
T Consensus        62 s~P~~~A~ml~~L~l~~~~~VLeIGtGs-GY~tAl   95 (213)
T PRK00312         62 SQPYMVARMTELLELKPGDRVLEIGTGS-GYQAAV   95 (213)
T ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCC-CHHHHH
T ss_conf             6799999999984368997599965986-099999


No 211
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT)  (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=82.67  E-value=1.7  Score=23.16  Aligned_cols=47  Identities=17%  Similarity=0.284  Sum_probs=25.1

Q ss_pred             CCCCCCCCCC--CC-CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf             4322112100--23-86333421012310125676578874388505886201224
Q gi|254780489|r   93 SSPLITHRLG--LM-QSGAIDLTGACAGFLYALVMADSYINSHQKPVLIIAANLLS  145 (325)
Q Consensus        93 ~a~~v~~~Lg--~~-~~~~~di~~~C~g~l~aL~~A~~~i~~g~~~vLVv~~e~~S  145 (325)
                      +.+...+-|.  +. ...++||-+|| |..+| -+|.-+    .++.+||+-|.+.
T Consensus        68 mvA~m~~yL~nhL~~~~~vLeiG~GS-GY~aa-vlA~~v----~~~G~V~SiEri~  117 (228)
T TIGR00080        68 MVAKMTEYLENHLKPGAKVLEIGTGS-GYQAA-VLAEIV----GRDGLVVSIERIP  117 (228)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCC-HHHHH-HHHHHH----HCCCEEEEEEECH
T ss_conf             99999998885214035566504785-58999-999987----1397189985357


No 212
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated
Probab=81.15  E-value=0.64  Score=25.90  Aligned_cols=68  Identities=10%  Similarity=0.130  Sum_probs=30.2

Q ss_pred             CCCCCEEEECCCCC-HHHHHHHHHCCCCHHHHHH--HHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf             00122463056541-3899999971978657002--185409330005999999999806789998999998615510
Q gi|254780489|r  245 PQDINRFIPHQANS-RIIQKVCEKIGLSKRIMVN--SLKDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRRGND  319 (325)
Q Consensus       245 ~~did~~i~Hq~~~-~~~~~~~~~lgi~~~~~~~--~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s  319 (325)
                      ...++..+-|..+. -+++.+.-.|-+....++-  ++.+     ..+.  .|+...++.+-.+-+.+|.-+||-|-.
T Consensus       336 v~S~Ks~~GH~lgAaGa~e~i~~~lal~~~~ipPt~n~~~-----p~d~--~l~~v~~~~~~~~~~~~l~nsfgFGG~  406 (415)
T PRK07103        336 INTTKSLVGHGLSAAGIVELIATLLQMRAGRLHPSRNLDE-----PIDP--SFDWVRSTAGSHDIHRALSLSIGFGGI  406 (415)
T ss_pred             EECCCHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-----CCCC--CCCCCCCCCCCCCCCEEEEEEECCCCE
T ss_conf             7586443203579999999999999984395089999899-----8997--658678877348888999960258741


No 213
>PRK07591 threonine synthase; Validated
Probab=79.74  E-value=2.7  Score=21.76  Aligned_cols=68  Identities=12%  Similarity=0.121  Sum_probs=43.5

Q ss_pred             EECCCC-CHHHHHHHHHCC----CCHHHHHH---HHHH-CC---CCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf             305654-138999999719----78657002---1854-09---330005999999999806789998999998615510
Q gi|254780489|r  252 IPHQAN-SRIIQKVCEKIG----LSKRIMVN---SLKD-FG---NSSSASIPLSLSLENQRKPFQKGEKILTISCRRGND  319 (325)
Q Consensus       252 i~Hq~~-~~~~~~~~~~lg----i~~~~~~~---~l~~-~G---N~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s  319 (325)
                      +.++.+ ...++.+.+.=|    ++.+.+..   .+.+ -|   -..+|..+-+|.++.++|.|+++|+|+++-.|+|+-
T Consensus       314 ig~P~~~~~~l~avr~sgG~~v~VsD~Ei~~A~~~La~~eGi~vEpasA~alAgl~kl~e~G~i~~de~VV~~lTG~GLK  393 (422)
T PRK07591        314 IGNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGTTVAVLKKLVEAGKIDPDETTVVYITGNGLK  393 (422)
T ss_pred             ECCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf             07988889999999986998999889999999999997389777860899999999999769999999499990887667


No 214
>PRK05638 threonine synthase; Validated
Probab=78.50  E-value=3.2  Score=21.34  Aligned_cols=68  Identities=18%  Similarity=0.260  Sum_probs=43.5

Q ss_pred             EECCCCC-HHHHHHHHHCC----CCHHHHHH---HHHHCC---CCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf             3056541-38999999719----78657002---185409---330005999999999806789998999998615510
Q gi|254780489|r  252 IPHQANS-RIIQKVCEKIG----LSKRIMVN---SLKDFG---NSSSASIPLSLSLENQRKPFQKGEKILTISCRRGND  319 (325)
Q Consensus       252 i~Hq~~~-~~~~~~~~~lg----i~~~~~~~---~l~~~G---N~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s  319 (325)
                      ++.+.+. .+++++.+.=|    ++.+.+..   .+.+-|   -..||...-+|.++.++|.|+++|+|+++-.|+|+-
T Consensus       280 I~~P~~~~~~l~avr~sgG~~vaVsD~EI~~a~~lla~eGif~EPasAaa~Agl~kl~e~G~I~~~e~VV~vlTGsGLK  358 (443)
T PRK05638        280 VKNPVMKEKVIEAIRESGGTAVVVNEEEIMAGEKLLANEGIFAELSSAVVMPALLKLVETGFIEKGDRVVLVVTGSGLK  358 (443)
T ss_pred             ECCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf             0898899999999998399899828999999999999689147757899999999999769989999299996888777


No 215
>PRK08197 threonine synthase; Validated
Probab=78.45  E-value=3.2  Score=21.32  Aligned_cols=61  Identities=15%  Similarity=0.202  Sum_probs=42.0

Q ss_pred             HHHHHHHHHCC----CCHHHHHH---HHHH-CCC---CCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf             38999999719----78657002---1854-093---30005999999999806789998999998615510
Q gi|254780489|r  259 RIIQKVCEKIG----LSKRIMVN---SLKD-FGN---SSSASIPLSLSLENQRKPFQKGEKILTISCRRGND  319 (325)
Q Consensus       259 ~~~~~~~~~lg----i~~~~~~~---~l~~-~GN---~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s  319 (325)
                      .+++.+.+.=|    ++.+.+..   .+.+ -|-   .+||..+-++.++.++|.|+++++|+++-.|.|+-
T Consensus       310 ~~l~av~~s~G~~v~VsD~Ei~~A~~~La~~eGi~~EpasA~alAgl~kl~e~G~i~~~~~VV~~lTG~GlK  381 (402)
T PRK08197        310 LVLDAVRESGGCAIAVDDEAILAALSELAREEGLFACPEGAAALAAAKQLRESGWLKSGERVVLFNTGTGLK  381 (402)
T ss_pred             HHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf             999999986998999899999999999998559277736999999999999829999999699990888667


No 216
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=77.36  E-value=4.1  Score=20.58  Aligned_cols=64  Identities=16%  Similarity=0.144  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEE----C---CCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCC
Q ss_conf             99999999998643013222344258843100----2---36887432211210023863---33421012310
Q gi|254780489|r   55 TDIAIQAGDIALRNANIKKDSISLTLLATSTP----D---HLLPPSSPLITHRLGLMQSG---AIDLTGACAGF  118 (325)
Q Consensus        55 ~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~----d---~~~P~~a~~v~~~Lg~~~~~---~~di~~~C~g~  118 (325)
                      ...-.+|+++++++++++++|||+|=++.-|-    .   .+.-+....|++++|++-+.   .-||..|--|.
T Consensus        70 ~~~~~~~i~~~i~~~~~~~~~id~Ig~HGQTi~H~P~~~~TlQiG~~~~ia~~tgi~VV~DFR~~Dia~GGqGA  143 (366)
T PRK09585         70 GRLFAEAVNALLAEAGLSPEDIDAIGSHGQTVRHRPERGFTLQIGDGALLAELTGITVVADFRRRDVAAGGQGA  143 (366)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCCCCEEEECCCHHHHHHHHCCCEEHHHHHHHHHCCCCCC
T ss_conf             99999999999998499803632897588876871588635433988999988199760753798986778999


No 217
>TIGR01921 DAP-DH diaminopimelate dehydrogenase; InterPro: IPR010190   This entry represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine biosynthesis in Corynebacterium, Bacterioides, Porphyromonas and other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterised ..
Probab=77.28  E-value=5.7  Score=19.69  Aligned_cols=118  Identities=18%  Similarity=0.230  Sum_probs=68.3

Q ss_pred             CCCCCEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf             96662099999973588613888999880999768311147508899489887999999999998643013222344258
Q gi|254780489|r    1 MIKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTL   80 (325)
Q Consensus         1 M~~~~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii   80 (325)
                      |.+-.+.|+|.|-- = +.     +++.+.-.+.  .+..||-+|+=++.-.-+.++++=+..+    ..-..+|||++|
T Consensus         1 M~kiRaaIVGYGNl-G-~~-----V~~ai~~~PD--mElvgv~~Rrd~~t~~va~~~~vy~V~~----~~K~~~dvdv~i   67 (326)
T TIGR01921         1 MSKIRAAIVGYGNL-G-KS-----VEEAIQQAPD--MELVGVFRRRDAETLDVAEELAVYAVVE----DEKELEDVDVLI   67 (326)
T ss_pred             CCEEEEEEECCCCH-H-HH-----HHHHHHCCCC--CEEEEEEEECCCCCCCHHHCCCHHHHHH----HHHCCCCEEEEE
T ss_conf             97057888622320-0-79-----9999840898--0489988707887576112252022222----232028825999


Q ss_pred             EEEEEE---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             843100---2368874322112100238633342101231012567657887438850588620
Q gi|254780489|r   81 LATSTP---DHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSHQKPVLIIAA  141 (325)
Q Consensus        81 ~~s~t~---d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g~~~vLVv~~  141 (325)
                      .|+-|.   .+.-|..|.+      +..+=+||+...-.-+-.+|+.|+.    ..++|=||++
T Consensus        68 LC~gsatd~pe~~p~fA~~------~nTvDsfD~H~~Ip~~r~~~DaaA~----~~g~VSvis~  121 (326)
T TIGR01921        68 LCTGSATDLPEQKPYFAAF------INTVDSFDIHTDIPDLRRTLDAAAK----EAGAVSVISA  121 (326)
T ss_pred             ECCCCCCCCCCCCCCCEEE------EECCCCCCCCCCHHHHHHHHHHHHH----HCCCEEEEEE
T ss_conf             7388645554345100122------1012365022420789999999998----6198789983


No 218
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family; InterPro: IPR014188   This entry represents a subfamily of the alcohol dehydrogenase, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This entry includes YhdH from Escherichia coli and YhfP from Bacillus subtilis both of which bind NADPH or NAD, but not zinc. Both proteins have been studied crystallographically for insight into function. .
Probab=76.87  E-value=1.7  Score=23.03  Aligned_cols=19  Identities=11%  Similarity=0.282  Sum_probs=11.9

Q ss_pred             EEECCCCCHHHHHHHHHCC
Q ss_conf             6305654138999999719
Q gi|254780489|r  251 FIPHQANSRIIQKVCEKIG  269 (325)
Q Consensus       251 ~i~Hq~~~~~~~~~~~~lg  269 (325)
                      .+|..--..+|+.++..|.
T Consensus       275 ~~p~~~R~~~W~RLA~dl~  293 (330)
T TIGR02823       275 YCPMALREAAWQRLATDLK  293 (330)
T ss_pred             CCCHHHHHHHHHHHHHHCC
T ss_conf             1887899999998874159


No 219
>TIGR01287 nifH nitrogenase iron protein; InterPro: IPR005977    The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene , . Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes . It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I .; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0016612 molybdenum-iron nitrogenase complex.
Probab=75.75  E-value=6.2  Score=19.43  Aligned_cols=21  Identities=19%  Similarity=0.302  Sum_probs=10.7

Q ss_pred             EEEECCCCCHHHHHHHHHCCC
Q ss_conf             463056541389999997197
Q gi|254780489|r  250 RFIPHQANSRIIQKVCEKIGL  270 (325)
Q Consensus       250 ~~i~Hq~~~~~~~~~~~~lgi  270 (325)
                      .++|.+-...=++.+..++++
T Consensus       253 ~~iP~Pl~~~eL~~~~~~~~~  273 (278)
T TIGR01287       253 FVIPTPLEMEELEELLMKYGV  273 (278)
T ss_pred             CCCCCCCCHHHHHHHHHHHCH
T ss_conf             527998987899999987111


No 220
>TIGR01751 crot-CoA-red crotonyl-CoA reductase; InterPro: IPR010085    Crotonyl-CoA reductase is responsible for the conversion of crotonyl-CoA to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate , . In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae  and coronatine from Pseudomonas syringae ..
Probab=75.34  E-value=2.2  Score=22.42  Aligned_cols=30  Identities=17%  Similarity=0.139  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHCCCCCC-CEEEEEEECCCCCC
Q ss_conf             99999999980678999-89999986155102
Q gi|254780489|r  290 IPLSLSLENQRKPFQKG-EKILTISCRRGNDR  320 (325)
Q Consensus       290 i~~~L~~~~~~g~i~~G-d~vll~~~G~G~s~  320 (325)
                      ||-+-..++.++.. .| .=||+++-++|+.-
T Consensus       377 ig~Ah~~~~~N~~~-~Gn~aVLv~A~rpGLgv  407 (409)
T TIGR01751       377 IGKAHQKVLANQHH-QGNVAVLVLAPRPGLGV  407 (409)
T ss_pred             HHHHHHHHHHCCCC-CCCEEEEEECCCCCCCC
T ss_conf             27999999847896-57646887327888856


No 221
>PRK13410 molecular chaperone DnaK; Provisional
Probab=74.97  E-value=3.2  Score=21.29  Aligned_cols=56  Identities=18%  Similarity=0.251  Sum_probs=32.1

Q ss_pred             CHHHHHHHC----CCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHH---HHHHHHHCCCCHHH
Q ss_conf             145434320----100367898899740120012246305654138---99999971978657
Q gi|254780489|r  219 GADIFYNAV----KIMAQSAKQSLRKSDLQPQDINRFIPHQANSRI---IQKVCEKIGLSKRI  274 (325)
Q Consensus       219 g~~v~~~~~----~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~---~~~~~~~lgi~~~~  274 (325)
                      .|.-|+..+    ....+.++++|++++++++|||.++.-=++-+|   .+.+.+-+|-.+.+
T Consensus       296 TR~eFE~L~~~L~~Rt~~pv~~aL~dAgl~~~dId~VILVGGSTRIP~Vq~~V~e~FGkep~~  358 (719)
T PRK13410        296 TRSQFEDLCGDLVSRLRRPVKRALKDAGLSPVQIDEVVLVGGSTRMPMVKQLVRSLIDREPNQ  358 (719)
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             599999889999999999999999983899414139999788255488999999984999788


No 222
>TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764    Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes.  AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate  ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage.
Probab=74.95  E-value=2.6  Score=21.91  Aligned_cols=81  Identities=17%  Similarity=0.409  Sum_probs=48.9

Q ss_pred             CCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC--EEEECCCCCHHHH-HHHHHCCC-----------CHHHHHHHHH-H
Q ss_conf             451454343201003678988997401200122--4630565413899-99997197-----------8657002185-4
Q gi|254780489|r  217 TNGADIFYNAVKIMAQSAKQSLRKSDLQPQDIN--RFIPHQANSRIIQ-KVCEKIGL-----------SKRIMVNSLK-D  281 (325)
Q Consensus       217 ~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did--~~i~Hq~~~~~~~-~~~~~lgi-----------~~~~~~~~l~-~  281 (325)
                      .+.++.|+.++..|.+.++    +.+  + +||  +++..-+-+.+.= ++|-+||+           |.+-+...|+ |
T Consensus        25 L~~~~~f~~~id~l~~~~~----~~~--~-~id~d~iVG~EaRGFifG~~LA~~LgvGFVPVRK~GKLP~~t~~~~Y~LE   97 (175)
T TIGR01090        25 LNNPELFRFLIDLLVERYK----DAN--G-EIDADLIVGLEARGFIFGAALAYKLGVGFVPVRKPGKLPGETVSASYDLE   97 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHH----HCC--C-CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECEE
T ss_conf             0687789999999999998----607--9-51513687676672577889999708980675478766842266740300


Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCC-CCCEEEEEE
Q ss_conf             09330005999999999806789-998999998
Q gi|254780489|r  282 FGNSSSASIPLSLSLENQRKPFQ-KGEKILTIS  313 (325)
Q Consensus       282 ~GN~~sAsi~~~L~~~~~~g~i~-~Gd~vll~~  313 (325)
                      ||.=       .|+  +++.-++ +|+||+++=
T Consensus        98 YG~d-------~lE--Ih~DA~~~~g~RVliVD  121 (175)
T TIGR01090        98 YGKD-------SLE--IHKDAIKIPGQRVLIVD  121 (175)
T ss_pred             CCCC-------EEE--EEHHHHHCCCCEEEEEE
T ss_conf             4730-------353--41113640789089983


No 223
>PRK09275 aspartate aminotransferase; Provisional
Probab=74.53  E-value=4.5  Score=20.34  Aligned_cols=95  Identities=21%  Similarity=0.203  Sum_probs=51.2

Q ss_pred             EEECCCCCEEEE--ECCCC--CHHHHHHHHHHHHHHHCCCCCCCC-----CEEEEEEE-EECCCCCCCCCCCCCCCC---
Q ss_conf             311147508899--48988--799999999999864301322234-----42588431-002368874322112100---
Q gi|254780489|r   36 IEQKTGIKYRYW--AEKHE--TLTDIAIQAGDIALRNANIKKDSI-----SLTLLATS-TPDHLLPPSSPLITHRLG---  102 (325)
Q Consensus        36 i~~~tGI~~R~~--~~~~e--~~~~la~~Aa~~aL~~a~~~~~dI-----d~ii~~s~-t~d~~~P~~a~~v~~~Lg---  102 (325)
                      +-++.||.+|..  ..++.  .-.++-.++..-+..+-|+++++.     |-+|-+.. .||+..|-+-..|++-|.   
T Consensus        77 ~p~~~Gi~~Rf~~fl~~~~~~pG~~fL~~~~~y~~~~~g~d~d~~v~El~dgiiGdnYPvP~RmL~~~E~Iv~~YL~~em  156 (531)
T PRK09275         77 MPQKEGIAERFETFLEEHKDVPGIDFLRAAISYVRDELGFDPDEFVYEMVDGIIGDNYPVPDRMLVHTEKIVKDYLRQEM  156 (531)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             75702299999999985899836899999999999886999889999999886338899967888989999999999996


Q ss_pred             -CCC--CCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             -238--63334210123101256765788743
Q gi|254780489|r  103 -LMQ--SGAIDLTGACAGFLYALVMADSYINS  131 (325)
Q Consensus       103 -~~~--~~~~di~~~C~g~l~aL~~A~~~i~~  131 (325)
                       -..  ...||+ .+--|++.|+--..+-++.
T Consensus       157 ~~~~~~~~~fdl-FatEGgTAAM~YiF~sL~~  187 (531)
T PRK09275        157 CGNRPPPGEFDL-FAVEGGTAAMCYIFDSLKE  187 (531)
T ss_pred             CCCCCCCCCCCE-EECCCCHHHHHHHHHHHHH
T ss_conf             289999887316-7416720579999999997


No 224
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; InterPro: IPR003526   This entry represents MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis.   A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The ygbB protein is a putative enzyme of this type .; GO: 0008685 2-C-methyl-D-erythritol 24-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process.
Probab=74.22  E-value=4.5  Score=20.35  Aligned_cols=67  Identities=9%  Similarity=0.168  Sum_probs=44.4

Q ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCC------CCHHHHHHHHHCCCCHHHHH---HHHHHCC
Q ss_conf             23224514543432010036789889974012001224630565------41389999997197865700---2185409
Q gi|254780489|r  213 YMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQA------NSRIIQKVCEKIGLSKRIMV---NSLKDFG  283 (325)
Q Consensus       213 ~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~------~~~~~~~~~~~lgi~~~~~~---~~l~~~G  283 (325)
                      .++-.+++.+.        +.+-+.+++.|+....||-.|.=|-      =..|.+.+++-|++|.|++-   .+=++.|
T Consensus        70 ~wKgaDS~~lL--------~~~~~~~~~~gy~~~N~D~tiia~~PKl~P~i~~mR~~iA~~L~i~~d~vnvKATT~EkLG  141 (159)
T TIGR00151        70 RWKGADSRVLL--------RKAVELVKEKGYRIGNVDVTIIAQRPKLAPHIEAMRENIAELLGIPLDQVNVKATTTEKLG  141 (159)
T ss_pred             HHCCCCHHHHH--------HHHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf             45688778999--------9999999855880456899997318986222689999998884687021132587676775


Q ss_pred             CCCC
Q ss_conf             3300
Q gi|254780489|r  284 NSSS  287 (325)
Q Consensus       284 N~~s  287 (325)
                      -||-
T Consensus       142 ~~Gr  145 (159)
T TIGR00151       142 FTGR  145 (159)
T ss_pred             CCCC
T ss_conf             4423


No 225
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=73.36  E-value=6.9  Score=19.14  Aligned_cols=30  Identities=17%  Similarity=0.224  Sum_probs=18.5

Q ss_pred             CEEEEEEEEECCCCCCCHHHHHHHHCCCHHHE
Q ss_conf             20999999735886138889998809997683
Q gi|254780489|r    5 SSCILGFGHAVPNQCIHNSIIERHLNLKLGVI   36 (325)
Q Consensus         5 ~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i   36 (325)
                      +..|..+--|.|...+  +++.++++...+.|
T Consensus         8 ~~~~~~~~~y~~g~~~--~~~a~~~g~~~~~i   37 (369)
T PRK00950          8 RAIVKEIKEYVPGKSK--EEIARNYGIDPESI   37 (369)
T ss_pred             HHHHHCCCCCCCCCCH--HHHHHHCCCCCCCE
T ss_conf             6886379998999999--99999809896898


No 226
>KOG1794 consensus
Probab=73.26  E-value=7.2  Score=19.03  Aligned_cols=123  Identities=16%  Similarity=0.104  Sum_probs=63.4

Q ss_pred             ECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC-CCEEEEEEEEECCCCCCCCCCCCCCCCCC---CCCCCCCCC
Q ss_conf             11475088994898879999999999986430132223-44258843100236887432211210023---863334210
Q gi|254780489|r   38 QKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDS-ISLTLLATSTPDHLLPPSSPLITHRLGLM---QSGAIDLTG  113 (325)
Q Consensus        38 ~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~d-Id~ii~~s~t~d~~~P~~a~~v~~~Lg~~---~~~~~di~~  113 (325)
                      +..|-.+-||.-+.+...+=-.++.++|++++|+++++ +.-|...-+-.|+  |..--.+.+.+.-+   .+..|-+.+
T Consensus        29 ~a~~~~Tnh~~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~lgL~lSg~d~--e~~~~~lv~~~R~~fps~ae~~~v~s  106 (336)
T KOG1794          29 RAVGGGTNHWLIGSTTCASRIEDMIREAKEKAGWDKKGPLRSLGLGLSGTDQ--EDKNRKLVTEFRDKFPSVAENFYVTS  106 (336)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC--HHHHHHHHHHHHHHCCCHHHEEEEEH
T ss_conf             7512654444578468999999999998866399845761014563146774--46788999999884502315046611


Q ss_pred             CCCCCHHHHHHHHHHHHC--C--CCEEEEEEECCCCCCCCCCCCCC-----CCCCCCCEEEEEECCC
Q ss_conf             123101256765788743--8--85058862012244446222443-----4325442001122057
Q gi|254780489|r  114 ACAGFLYALVMADSYINS--H--QKPVLIIAANLLSRRINLEDKDT-----AIIFGDAAGAVVLAPS  171 (325)
Q Consensus       114 ~C~g~l~aL~~A~~~i~~--g--~~~vLVv~~e~~S~~~d~~d~~~-----~~lfGDgA~A~il~~~  171 (325)
                      -         ....+...  |  ..-||+-+.....+.+++.-...     .-+.||+++|.-+++.
T Consensus       107 D---------a~~sl~a~t~g~~~GiVLiaGTgs~crl~~~DGs~~~~ggwg~~iGd~GSaywia~~  164 (336)
T KOG1794         107 D---------ADGSLAAATPGGEGGIVLIAGTGSNCRLVNPDGSEKGAGGWGHMIGDGGSAYWIARQ  164 (336)
T ss_pred             H---------HHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             5---------777875248777786799953785048888988826799887743888520011453


No 227
>TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828    6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=73.11  E-value=3.4  Score=21.17  Aligned_cols=27  Identities=22%  Similarity=0.205  Sum_probs=13.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             101231012567657887438850588
Q gi|254780489|r  112 TGACAGFLYALVMADSYINSHQKPVLI  138 (325)
Q Consensus       112 ~~~C~g~l~aL~~A~~~i~~g~~~vLV  138 (325)
                      ..+|+.-+.|++=.++=..||.+..+|
T Consensus       139 DTALNTi~~avdKiRDTA~SHeR~f~i  165 (302)
T TIGR02482       139 DTALNTILDAVDKIRDTATSHERAFVI  165 (302)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             667437998776542130121656899


No 228
>TIGR02446 FadI acetyl-CoA C-acyltransferase FadI; InterPro: IPR012806    This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (2.3.1.16 from EC) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (IPR012802 from INTERPRO). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in Escherichia coli.; GO: 0008415 acyltransferase activity, 0016740 transferase activity, 0006631 fatty acid metabolic process, 0016042 lipid catabolic process.
Probab=73.09  E-value=3.9  Score=20.74  Aligned_cols=88  Identities=17%  Similarity=0.109  Sum_probs=59.9

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             887999999999998643013222344258843100236887432211210023-8633342101231012567657887
Q gi|254780489|r   51 HETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSYI  129 (325)
Q Consensus        51 ~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~i  129 (325)
                      .-...||+.-...++|.+..++|+=|..++|+.+..--..|..|..|.---|+. +.-+|.+.-+|+...++...+..-+
T Consensus        28 ~~~a~dlGkmvv~~ll~r~~~~~~~ieq~v~GqvvqmP~aPniareivlGtGm~~~tdaysv~raCatsfq~~~nvaes~  107 (430)
T TIGR02446        28 GIPAVDLGKMVVSELLARSEIDPKLIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVTRACATSFQSAVNVAESI  107 (430)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEECCCCCCHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             56413445788987775216777897776610013157764023342102673000120244567777788899888777


Q ss_pred             HCCCCEEEE
Q ss_conf             438850588
Q gi|254780489|r  130 NSHQKPVLI  138 (325)
Q Consensus       130 ~~g~~~vLV  138 (325)
                      -+|.-.+-+
T Consensus       108 m~G~i~~Gi  116 (430)
T TIGR02446       108 MAGAIEIGI  116 (430)
T ss_pred             HHCCEEEEE
T ss_conf             515301311


No 229
>PRK07409 threonine synthase; Validated
Probab=72.51  E-value=5.9  Score=19.57  Aligned_cols=35  Identities=17%  Similarity=0.188  Sum_probs=28.8

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf             30005999999999806789998999998615510
Q gi|254780489|r  285 SSSASIPLSLSLENQRKPFQKGEKILTISCRRGND  319 (325)
Q Consensus       285 ~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s  319 (325)
                      .+|+.-.-++-++.++|++.||++|+++-.|.|+-
T Consensus       289 pssaaa~Aa~~kl~~~g~i~~~~~VV~iltg~GlK  323 (350)
T PRK07409        289 PASAASVAGLLKAKEQGKVPKGSTVVCTLTGNGLK  323 (350)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf             20899999999999759999999699995889886


No 230
>TIGR02470 sucr_synth sucrose synthase; InterPro: IPR012820    This entry represents sucrose synthase an enzyme that despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyses the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.; GO: 0016157 sucrose synthase activity.
Probab=72.30  E-value=1.6  Score=23.35  Aligned_cols=95  Identities=24%  Similarity=0.320  Sum_probs=67.0

Q ss_pred             CEEEEEEEEECCCCC--CCHHHHHHHHCCCHHHEEEC-----CCCCEEEEECCCC---CHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             209999997358861--38889998809997683111-----4750889948988---7999999999998643013222
Q gi|254780489|r    5 SSCILGFGHAVPNQC--IHNSIIERHLNLKLGVIEQK-----TGIKYRYWAEKHE---TLTDIAIQAGDIALRNANIKKD   74 (325)
Q Consensus         5 ~~~I~g~g~~lP~~~--i~n~~l~~~~~~~~~~i~~~-----tGI~~R~~~~~~e---~~~~la~~Aa~~aL~~a~~~~~   74 (325)
                      +-+|+=+=.-+|+-.  -.|+.||+..|+...||.|-     .|+-.|.|...=|   ....-|..|++++++.-+-.|+
T Consensus       314 ~PkIlIvTRLiPdA~GT~CnqRLEKv~Gt~~~~ILRVPFr~~nG~~~~~WISRFeiWPYLE~FA~D~~~e~~~el~g~PD  393 (790)
T TIGR02470       314 TPKILIVTRLIPDAEGTTCNQRLEKVSGTEHAHILRVPFRTENGIILRKWISRFEIWPYLETFAEDAEKEILAELQGKPD  393 (790)
T ss_pred             CCEEEEEECCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             55289985017689886057245201279853164216643477300366330124720456689999999998468997


Q ss_pred             CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             34425884310023688743221121002386
Q gi|254780489|r   75 SISLTLLATSTPDHLLPPSSPLITHRLGLMQS  106 (325)
Q Consensus        75 dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~  106 (325)
                         ||| +..+-..+   .|++++++||.++|
T Consensus       394 ---LII-GNYSDGNL---VA~LLA~kLgVTQC  418 (790)
T TIGR02470       394 ---LII-GNYSDGNL---VASLLARKLGVTQC  418 (790)
T ss_pred             ---EEE-ECCCCHHH---HHHHHHHHCCCCCC
T ss_conf             ---067-32563589---99999853362222


No 231
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=71.35  E-value=7.9  Score=18.75  Aligned_cols=85  Identities=20%  Similarity=0.239  Sum_probs=36.2

Q ss_pred             CCCCHHHH---HHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC--CC----CCCCCC--------
Q ss_conf             98879999---99999998643013222344258843100236887432211210023--86----333421--------
Q gi|254780489|r   50 KHETLTDI---AIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM--QS----GAIDLT--------  112 (325)
Q Consensus        50 ~~e~~~~l---a~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~--~~----~~~di~--------  112 (325)
                      +.++..++   ...+..+.|++  ..|+   +|++..-|--.+.   ++.++..+.++  +.    .++|..        
T Consensus        69 ~~~tl~~~t~~~i~~~~~vl~~--~kPD---~VlVhGDT~t~lA---~alaa~~~~IpV~HvEAGlRt~~~~~PEE~NR~  140 (383)
T COG0381          69 PGQTLGEITGNIIEGLSKVLEE--EKPD---LVLVHGDTNTTLA---GALAAFYLKIPVGHVEAGLRTGDLYFPEEINRR  140 (383)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH--HCCC---EEEEECCCCHHHH---HHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHH
T ss_conf             6888899999999999999986--2999---8999178536889---999999868936887425444787783798787


Q ss_pred             --CCCCCCHH-HHHHH-HHHHHCCC--CEEEEEEEC
Q ss_conf             --01231012-56765-78874388--505886201
Q gi|254780489|r  113 --GACAGFLY-ALVMA-DSYINSHQ--KPVLIIAAN  142 (325)
Q Consensus       113 --~~C~g~l~-aL~~A-~~~i~~g~--~~vLVv~~e  142 (325)
                        ..++-.-. .-.+| .++++.|.  +++.|++.-
T Consensus       141 l~~~~S~~hfapte~ar~nLl~EG~~~~~IfvtGnt  176 (383)
T COG0381         141 LTSHLSDLHFAPTEIARKNLLREGVPEKRIFVTGNT  176 (383)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEECCH
T ss_conf             887765230377199999999769995516885973


No 232
>PRK06260 threonine synthase; Validated
Probab=70.88  E-value=6.2  Score=19.44  Aligned_cols=61  Identities=18%  Similarity=0.159  Sum_probs=40.2

Q ss_pred             HHHHHHHHHCC----CCHHHHHH---HHH-HCCC---CCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf             38999999719----78657002---185-4093---30005999999999806789998999998615510
Q gi|254780489|r  259 RIIQKVCEKIG----LSKRIMVN---SLK-DFGN---SSSASIPLSLSLENQRKPFQKGEKILTISCRRGND  319 (325)
Q Consensus       259 ~~~~~~~~~lg----i~~~~~~~---~l~-~~GN---~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s  319 (325)
                      ..++.+.+.-|    ++.+.+..   .+. +-|-   ..+|...-.|.++.++|.|+++++|++.-.|.|+-
T Consensus       301 ~~l~al~~s~G~~v~VtD~ei~~A~~~La~~eGi~vEpasA~alAgl~kl~e~G~i~~~~~VV~~lTG~GlK  372 (400)
T PRK06260        301 KALRAIRESGGTAESVSDEEILAAQRLLARKEGIGVEPASAASVAGLIKLVEMGVIDKDEKVVCVTTGHLLK  372 (400)
T ss_pred             HHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
T ss_conf             999999983998999889999999999997489067836899999999999739999999799990788768


No 233
>PRK06721 threonine synthase; Reviewed
Probab=70.84  E-value=6.7  Score=19.23  Aligned_cols=34  Identities=18%  Similarity=0.210  Sum_probs=28.0

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf             0005999999999806789998999998615510
Q gi|254780489|r  286 SSASIPLSLSLENQRKPFQKGEKILTISCRRGND  319 (325)
Q Consensus       286 ~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s  319 (325)
                      ++|.-.-++-++.++|.++||++|+++-.|.|+-
T Consensus       286 ssa~alAallkl~~~g~i~~g~~VV~iltg~GlK  319 (352)
T PRK06721        286 GSNASLAGVMKHVQSGKIKKGETVVAVLTGNGLK  319 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
T ss_conf             8899999999999839989879899995899877


No 234
>pfam01295 Adenylate_cycl Adenylate cyclase, class-I.
Probab=69.80  E-value=8.5  Score=18.53  Aligned_cols=15  Identities=13%  Similarity=0.160  Sum_probs=8.5

Q ss_pred             HHHHHHHCCCHHHEE
Q ss_conf             899988099976831
Q gi|254780489|r   23 SIIERHLNLKLGVIE   37 (325)
Q Consensus        23 ~~l~~~~~~~~~~i~   37 (325)
                      +.+.+.++|+.+.|.
T Consensus       358 ~~Lv~~W~Ws~~~l~  372 (830)
T pfam01295       358 SELVNQWNWSEELLQ  372 (830)
T ss_pred             HHHHHHCCCCHHHHH
T ss_conf             999986599989998


No 235
>PRK06352 threonine synthase; Validated
Probab=69.54  E-value=7.3  Score=18.98  Aligned_cols=35  Identities=17%  Similarity=0.201  Sum_probs=28.7

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf             30005999999999806789998999998615510
Q gi|254780489|r  285 SSSASIPLSLSLENQRKPFQKGEKILTISCRRGND  319 (325)
Q Consensus       285 ~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s  319 (325)
                      .+||...-+|-++.++|.++||++|+++-.|.|+-
T Consensus       285 pssa~alAallkl~~~G~l~~g~~VV~vltg~GlK  319 (351)
T PRK06352        285 PGSAASLAGVIQHVANGTIKKGETVVCVFTGNGLK  319 (351)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf             77899999999999749999859899995889986


No 236
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=69.13  E-value=5.8  Score=19.61  Aligned_cols=49  Identities=12%  Similarity=0.202  Sum_probs=34.5

Q ss_pred             CHHHHHHHHHHHHCCCCCCCCEEEECC---------CCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf             003678988997401200122463056---------54138999999719786570021
Q gi|254780489|r  229 IMAQSAKQSLRKSDLQPQDINRFIPHQ---------ANSRIIQKVCEKIGLSKRIMVNS  278 (325)
Q Consensus       229 ~~~~~i~~~l~~~gl~~~did~~i~Hq---------~~~~~~~~~~~~lgi~~~~~~~~  278 (325)
                      .+...+.+.|.+.|...++| +++||.         ++..|+...++.++++.++.+.+
T Consensus        69 ~i~~~m~~~l~~~g~~id~i-y~CPh~p~~~c~cRKP~pGMl~~a~~~~~id~~~s~mI  126 (181)
T PRK08942         69 ALHEKMDWSLADRGGDLDGI-YYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMV  126 (181)
T ss_pred             HHHHHHHHHHHHCCCCEEEE-EECCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHCEEE
T ss_conf             99999999999769943137-87689971447788998499999999809884218476


No 237
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=68.66  E-value=3.1  Score=21.45  Aligned_cols=56  Identities=13%  Similarity=0.220  Sum_probs=36.4

Q ss_pred             CHHHHHHHCC----CHHHHHHHHHHHHCCCCCCCCEEEECCCCCHH---HHHHHHHCCCCHHH
Q ss_conf             1454343201----00367898899740120012246305654138---99999971978657
Q gi|254780489|r  219 GADIFYNAVK----IMAQSAKQSLRKSDLQPQDINRFIPHQANSRI---IQKVCEKIGLSKRI  274 (325)
Q Consensus       219 g~~v~~~~~~----~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~---~~~~~~~lgi~~~~  274 (325)
                      .|+-|+..+.    .....++++|++++++++|||.++.-=++-+|   .+.+.+.+|-++.+
T Consensus       301 tR~~FE~l~~~L~~rt~~~v~~aL~dA~l~~~dId~ViLVGGSTRiP~Vq~~v~~~Fgk~~~~  363 (621)
T PRK05183        301 TREQFEALIAPLVKRTLLACRRALRDAGVEADEVLEVVMVGGSTRVPLVREAVGEFFGRTPLT  363 (621)
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             499999999999999999999999871368300209999288545668999999985989666


No 238
>pfam02887 PK_C Pyruvate kinase, alpha/beta domain. As well as being found in pyruvate kinase this family is found as an isolated domain in some bacterial proteins.
Probab=68.11  E-value=7.5  Score=18.91  Aligned_cols=27  Identities=15%  Similarity=0.240  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf             999999999806789998999998615
Q gi|254780489|r  290 IPLSLSLENQRKPFQKGEKILTISCRR  316 (325)
Q Consensus       290 i~~~L~~~~~~g~i~~Gd~vll~~~G~  316 (325)
                      +-.++..+.++|.+++||+|++++--+
T Consensus        77 i~~a~~~l~~~g~~~~GD~vVvv~G~p  103 (117)
T pfam02887        77 IAEALRVAKDAGLIKKGDLVVVTAGVP  103 (117)
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf             999999999869999999899984635


No 239
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=67.54  E-value=9.5  Score=18.23  Aligned_cols=46  Identities=15%  Similarity=0.138  Sum_probs=32.0

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf             99999971978657002185409330005999999999806789998999998615
Q gi|254780489|r  261 IQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRR  316 (325)
Q Consensus       261 ~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~  316 (325)
                      ++.+++.-||+.|.++          ++-.+..|.+++++|.+.+|++|+++=.|.
T Consensus       273 i~~la~~eGI~ldPvY----------TgKa~~gl~~li~~g~i~~g~~Vv~ihTGG  318 (331)
T PRK03910        273 IKLLARLEGILLDPVY----------TGKAMAGLIDLIRKGRFKDGGNVLFIHTGG  318 (331)
T ss_pred             HHHHHHHHCCCCCHHH----------HHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf             9999997593025326----------799999999999849989989299998996


No 240
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.34  E-value=4.5  Score=20.32  Aligned_cols=32  Identities=16%  Similarity=0.224  Sum_probs=17.3

Q ss_pred             CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHH
Q ss_conf             68874322112100238-6333421012310125
Q gi|254780489|r   89 LLPPSSPLITHRLGLMQ-SGAIDLTGACAGFLYA  121 (325)
Q Consensus        89 ~~P~~a~~v~~~Lg~~~-~~~~di~~~C~g~l~a  121 (325)
                      ..|.+.+++.+.|.++. ...++|-.|| |+..|
T Consensus        56 s~P~~vA~m~~~L~~~~g~~VLEIGtGs-GY~aA   88 (209)
T COG2518          56 SAPHMVARMLQLLELKPGDRVLEIGTGS-GYQAA   88 (209)
T ss_pred             CCCHHHHHHHHHHCCCCCCEEEEECCCC-HHHHH
T ss_conf             5747999999974899998688877783-09999


No 241
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=66.93  E-value=2.7  Score=21.78  Aligned_cols=43  Identities=14%  Similarity=0.234  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCHH---HHHHHHHCCCCHH
Q ss_conf             367898899740120012246305654138---9999997197865
Q gi|254780489|r  231 AQSAKQSLRKSDLQPQDINRFIPHQANSRI---IQKVCEKIGLSKR  273 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~~did~~i~Hq~~~~~---~~~~~~~lgi~~~  273 (325)
                      ...++++|++++++++|||.++.-=++-+|   .+.+.+.+|-++.
T Consensus       337 ~~~v~~aL~dAgl~~~dId~VILVGGSTRIP~Vq~~l~~~Fgkep~  382 (657)
T PTZ00186        337 IAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPF  382 (657)
T ss_pred             HHHHHHHHHHHCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf             9999999998189987800899957841547999999998589977


No 242
>PRK00055 ribonuclease Z; Reviewed
Probab=66.70  E-value=9.8  Score=18.12  Aligned_cols=68  Identities=19%  Similarity=0.246  Sum_probs=43.5

Q ss_pred             CCCCCEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf             96662099999973588613888999880999768311147508899489887999999999998643013222344258
Q gi|254780489|r    1 MIKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTL   80 (325)
Q Consensus         1 M~~~~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii   80 (325)
                      ||  ++.++|+|..+|....        .  ....+.+ ++ .++.+.+.++..        ..-|.+.++++.+||.|+
T Consensus         1 mm--kit~LGtg~~~p~~~R--------~--~s~~li~-~~-~~~iliD~G~G~--------~~~l~~~~~~~~~l~~I~   58 (259)
T PRK00055          1 MM--ELTFLGTGSGVPTPTR--------N--VSSILLR-LG-GELWLFDCGEGT--------QRQMLRAGIGPRKIDRIF   58 (259)
T ss_pred             CC--EEEEEECCCCCCCCCC--------C--CCEEEEE-EC-CEEEEEECCCHH--------HHHHHHCCCCHHHCCEEE
T ss_conf             94--8999906899889999--------6--4889999-99-908999588159--------999998199955765899


Q ss_pred             EEEEEECCCC
Q ss_conf             8431002368
Q gi|254780489|r   81 LATSTPDHLL   90 (325)
Q Consensus        81 ~~s~t~d~~~   90 (325)
                      ..+.-.|+..
T Consensus        59 iTH~H~DH~~   68 (259)
T PRK00055         59 ITHLHGDHIF   68 (259)
T ss_pred             EECCCHHHHC
T ss_conf             9643357665


No 243
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=66.05  E-value=5  Score=20.06  Aligned_cols=35  Identities=20%  Similarity=0.142  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf             9999999998643013222344258843100236887
Q gi|254780489|r   56 DIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPP   92 (325)
Q Consensus        56 ~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~   92 (325)
                      +-.....++||++|+++++|||+|-+ |..| -+.|+
T Consensus        52 e~i~~li~~al~eA~~~~~dID~IA~-T~gP-GL~ga   86 (342)
T COG0533          52 ENIPPLIEEALAEAGVSLEDIDAIAV-TAGP-GLGGA   86 (342)
T ss_pred             HHHHHHHHHHHHHCCCCHHCCCEEEE-ECCC-CCHHH
T ss_conf             98999999999984998301888998-1699-94477


No 244
>TIGR02350 prok_dnaK chaperone protein DnaK; InterPro: IPR012725    Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes, the grpE protein is a co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold . DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle.    Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for the Mycoplasma sequence) found clustered with other genes of this systems. This entry excludes DnaK homologues that are not DnaK itself, such as the heat shock cognate protein HscA (IPR010236 from INTERPRO). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of DnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; the lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=65.87  E-value=3  Score=21.54  Aligned_cols=43  Identities=23%  Similarity=0.347  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHCCCCCCCCCEEEE-EEEEECCCCCCCCCCCCCCCCC
Q ss_conf             999999986430132223442588-4310023688743221121002
Q gi|254780489|r   58 AIQAGDIALRNANIKKDSISLTLL-ATSTPDHLLPPSSPLITHRLGL  103 (325)
Q Consensus        58 a~~Aa~~aL~~a~~~~~dId~ii~-~s~t~d~~~P~~a~~v~~~Lg~  103 (325)
                      ..+-.++||.+|+++++|||-||. +..|+   +|..-..|.+-+|-
T Consensus       308 ~~~p~~~aL~DA~l~~~~I~~v~LVGG~TR---iP~V~~~V~~~~GK  351 (598)
T TIGR02350       308 TKEPVRQALKDAGLSASDIDEVILVGGSTR---IPAVQELVKEFFGK  351 (598)
T ss_pred             HHHHHHHHHHHCCCCHHHCCEEEEECCCCC---HHHHHHHHHHHHCC
T ss_conf             899999999753788436666898558841---24899999987298


No 245
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=64.80  E-value=8.1  Score=18.69  Aligned_cols=47  Identities=11%  Similarity=0.140  Sum_probs=21.8

Q ss_pred             EEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECC
Q ss_conf             31114750889948988799999999999864301322234425884310023
Q gi|254780489|r   36 IEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDH   88 (325)
Q Consensus        36 i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~   88 (325)
                      |..+.||..-++..+   ..+---.-..+.|++.|+   .||-+.+|--.|+.
T Consensus        52 VTNQsGIgrG~~t~e---d~~~ih~~m~~~L~~~Gi---~id~Iy~CPH~p~d   98 (354)
T PRK05446         52 VTNQDGLGTDSFPQE---DFDGPHNLMMQIFESQGI---KFDDVLICPHFPED   98 (354)
T ss_pred             EECCCCCCCCCCCHH---HHHHHHHHHHHHHHHCCC---CCCEEEECCCCCCC
T ss_conf             948851147988999---999999999999997797---34759988998857


No 246
>TIGR02430 pcaF beta-ketoadipyl CoA thiolase; InterPro: IPR012793    Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid.; GO: 0016747 transferase activity transferring groups other than amino-acyl groups, 0019619 protocatechuate catabolic process.
Probab=64.74  E-value=4.5  Score=20.33  Aligned_cols=94  Identities=17%  Similarity=0.170  Sum_probs=59.9

Q ss_pred             CHHHHHHHHHHHHHHHC-CCCCCCCCEEEEEEEEECCCCCCCCCCCCCCC-CCCC-CCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             79999999999986430-13222344258843100236887432211210-0238-633342101231012567657887
Q gi|254780489|r   53 TLTDIAIQAGDIALRNA-NIKKDSISLTLLATSTPDHLLPPSSPLITHRL-GLMQ-SGAIDLTGACAGFLYALVMADSYI  129 (325)
Q Consensus        53 ~~~~la~~Aa~~aL~~a-~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~L-g~~~-~~~~di~~~C~g~l~aL~~A~~~i  129 (325)
                      ...||+.--.+..+++. .++...||-|++++...---.--..++...-| |++. ++...++--|.+.+.++..+..-+
T Consensus        24 rad~l~a~P~~~l~~~~~~~~~~~~d~v~~G~anqaGednrnvarm~~llaGlP~~v~~~t~nrlC~s~lda~~~~~ra~  103 (400)
T TIGR02430        24 RADDLAAVPIKALLARNPSLDAAAIDDVILGCANQAGEDNRNVARMAALLAGLPVSVPGTTVNRLCGSGLDAIGLAARAI  103 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             10002233699998532202656531443123211351035799999997068641101456665421378999988876


Q ss_pred             HCCCCEEEEEEE-CCCCC
Q ss_conf             438850588620-12244
Q gi|254780489|r  130 NSHQKPVLIIAA-NLLSR  146 (325)
Q Consensus       130 ~~g~~~vLVv~~-e~~S~  146 (325)
                      ++|....+|.++ |.+|+
T Consensus       104 ~~G~~~l~iaGGvesmsr  121 (400)
T TIGR02430       104 KAGEADLVIAGGVESMSR  121 (400)
T ss_pred             HCCCCCEEEECCCHHHCC
T ss_conf             327643577647211203


No 247
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=64.23  E-value=11  Score=17.82  Aligned_cols=87  Identities=21%  Similarity=0.293  Sum_probs=48.7

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             87999999999998643013222344258843100236887432211210023863334210123101256765788743
Q gi|254780489|r   52 ETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINS  131 (325)
Q Consensus        52 e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~  131 (325)
                      +...+.+-.|+...|.++-..-+.|.+|.|.....+...|++-..-.-+-.+....    ..|++..-.||..|..+++.
T Consensus        16 ~~rl~~aK~a~~~ll~d~~~~~D~v~lv~F~g~~a~~~lppT~~~~~~~~~l~~L~----~gG~T~l~~gL~~a~~~~~~   91 (178)
T cd01451          16 RHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAEVLLPPTRSVELAKRRLARLP----TGGGTPLAAGLLAAYELAAE   91 (178)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCCCHHHHHHHHHCCC----CCCCCCHHHHHHHHHHHHHH
T ss_conf             56799999999999997434678899999759755585688765799999872167----88985199999999999998


Q ss_pred             C-----CCEEEEEEEC
Q ss_conf             8-----8505886201
Q gi|254780489|r  132 H-----QKPVLIIAAN  142 (325)
Q Consensus       132 g-----~~~vLVv~~e  142 (325)
                      .     ..+++|+-+|
T Consensus        92 ~~~~~~~~~~iiLlTD  107 (178)
T cd01451          92 QARDPGQRPLIVVITD  107 (178)
T ss_pred             HCCCCCCCEEEEEECC
T ss_conf             5027898439999846


No 248
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=63.93  E-value=11  Score=17.78  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=17.4

Q ss_pred             EEEEEEEEECCCCCCCHHHHHHHHCC
Q ss_conf             09999997358861388899988099
Q gi|254780489|r    6 SCILGFGHAVPNQCIHNSIIERHLNL   31 (325)
Q Consensus         6 ~~I~g~g~~lP~~~i~n~~l~~~~~~   31 (325)
                      -.|.++.-|.|...+  +++++++|.
T Consensus         8 p~i~~~~~y~~g~~~--~~~~~~~g~   31 (367)
T PRK02731          8 PGILDIAPYVPGKPI--EELVREYGI   31 (367)
T ss_pred             CCCCCCCCCCCCCCH--HHHHHHCCC
T ss_conf             212048998999998--999986098


No 249
>pfam01968 Hydantoinase_A Hydantoinase/oxoprolinase. This family includes the enzymes hydantoinase and oxoprolinase EC:3.5.2.9. Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds.
Probab=63.39  E-value=11  Score=17.72  Aligned_cols=53  Identities=19%  Similarity=0.255  Sum_probs=41.1

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCH
Q ss_conf             45434320100367898899740120012246305654138999999719786
Q gi|254780489|r  220 ADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSK  272 (325)
Q Consensus       220 ~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~  272 (325)
                      +.+.+.+...|.+.+++...+.|+++.|+..+.+--++..+...++++||++.
T Consensus       209 ~~ii~~~~~~m~~ai~~~~~~~g~dp~~~~lv~~GGag~~~~~~la~~lg~~~  261 (285)
T pfam01968       209 EGILRIANETMADAVRLLSVERGLDPRDFPLVVFGGAGPLHAPELAEELGIKE  261 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE
T ss_conf             99999999999999999999849997787899987829999999999859998


No 250
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=62.79  E-value=4.9  Score=20.13  Aligned_cols=42  Identities=17%  Similarity=0.306  Sum_probs=32.7

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE-EEECCCCCC
Q ss_conf             887999999999998643013222344258843-100236887
Q gi|254780489|r   51 HETLTDIAIQAGDIALRNANIKKDSISLTLLAT-STPDHLLPP   92 (325)
Q Consensus        51 ~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s-~t~d~~~P~   92 (325)
                      .|+.++|--....+++++|+++.+|+|.|+-+| ++..+..|-
T Consensus        62 resV~elV~dtl~e~~k~A~l~i~DL~FVVRSTGV~Agf~spe  104 (445)
T TIGR03285        62 RESVAELVKDTLKESLKKAGLDIDDLDFVVRSTGVTAGFASPE  104 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEECCEEECCCCHH
T ss_conf             8899999999999999973998022557995064430568979


No 251
>COG3072 CyaA Adenylate cyclase [Nucleotide transport and metabolism]
Probab=62.73  E-value=7.7  Score=18.84  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=18.0

Q ss_pred             CCHHHHHHHHHHH---HCCCCCCCCEEEECCCCCHHHHH
Q ss_conf             1003678988997---40120012246305654138999
Q gi|254780489|r  228 KIMAQSAKQSLRK---SDLQPQDINRFIPHQANSRIIQK  263 (325)
Q Consensus       228 ~~~~~~i~~~l~~---~gl~~~did~~i~Hq~~~~~~~~  263 (325)
                      ..|+++.+.++.+   -.-.|+.|+.|+..|--+..++.
T Consensus       618 qA~leaLk~~l~k~h~ga~pP~sv~Vfcys~~~r~~ir~  656 (853)
T COG3072         618 QAMLEALKTILGKMHQGAPPPDSVQVFCYSQHLRGLIRT  656 (853)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHH
T ss_conf             689999999988873689999516777537778999999


No 252
>PRK09605 O-sialoglycoprotein endopeptidase/protein kinase; Reviewed
Probab=62.70  E-value=9.4  Score=18.25  Aligned_cols=79  Identities=22%  Similarity=0.261  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCC--CCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             9999999986430132223442588431002368874--32211210023-86333421012310125676578874388
Q gi|254780489|r   57 IAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPS--SPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSYINSHQ  133 (325)
Q Consensus        57 la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~--a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~i~~g~  133 (325)
                      -...-.++||++|+++++|||.|-+ |.-| -+.|+.  ....++.|-.. +.+-..||. |-|=     +....+.++.
T Consensus        52 ~i~~vv~~aL~~A~i~~~dIdaIA~-T~GP-GL~g~L~VG~~~Ak~La~~~~~PligVnH-~~gH-----i~~~rl~~~~  123 (536)
T PRK09605         52 AIPKVIKEALEEAGIKKGDIDLVAF-SQGP-GLGPCLRVVATAARALALSLDVPLIGVNH-CIAH-----VEIGRLTTGA  123 (536)
T ss_pred             HHHHHHHHHHHHCCCCHHHCCEEEE-CCCC-CCHHHHHHHHHHHHHHHHHHCCCEEECCH-HHHH-----HHHHHHCCCC
T ss_conf             9999999999984999888989999-0699-81786899999999999984998500340-8988-----7442310698


Q ss_pred             -CE-EEEEEECC
Q ss_conf             -50-58862012
Q gi|254780489|r  134 -KP-VLIIAANL  143 (325)
Q Consensus       134 -~~-vLVv~~e~  143 (325)
                       .+ +|+|++-.
T Consensus       124 ~~Pl~L~VSGGh  135 (536)
T PRK09605        124 RDPVTLYVSGGN  135 (536)
T ss_pred             CCCCEEEEECCC
T ss_conf             788569997686


No 253
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family; InterPro: IPR014189   Members of this family are putative quinone oxidoreductases that belong to the broader superfamily of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxidoreductases. An alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, consequently members of this entry are likely to be quinone oxidoreductases. A member of this family in Homo sapiens (Human), PIG3, is induced by p53 but is otherwise uncharacterised..
Probab=61.94  E-value=6.6  Score=19.24  Aligned_cols=38  Identities=5%  Similarity=0.152  Sum_probs=25.8

Q ss_pred             HHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             998643013222344258843100236887432211210023
Q gi|254780489|r   63 DIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM  104 (325)
Q Consensus        63 ~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~  104 (325)
                      -++++.+++.+-+- +||.+.++.   .-++|.++++.+|++
T Consensus       134 ~NLF~~g~L~~GEt-vLiHGGaSG---IGttAIqLAKA~Ga~  171 (334)
T TIGR02824       134 SNLFQRGGLKAGET-VLIHGGASG---IGTTAIQLAKAFGAR  171 (334)
T ss_pred             HHHHHHCCCCCCCE-EEEEECCCC---HHHHHHHHHHHCCCE
T ss_conf             86872211378972-899713673---679999999856975


No 254
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=61.05  E-value=12  Score=17.46  Aligned_cols=57  Identities=19%  Similarity=0.212  Sum_probs=37.2

Q ss_pred             CHHHHHHHC----CCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHH---HHHHHHHCCCCHHHH
Q ss_conf             145434320----100367898899740120012246305654138---999999719786570
Q gi|254780489|r  219 GADIFYNAV----KIMAQSAKQSLRKSDLQPQDINRFIPHQANSRI---IQKVCEKIGLSKRIM  275 (325)
Q Consensus       219 g~~v~~~~~----~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~---~~~~~~~lgi~~~~~  275 (325)
                      .|.-|+..+    ......++++|++++++++|||.+++-=++-+|   .+.+.+.+|-++.+.
T Consensus       296 TR~~FE~l~~~l~~r~~~~v~~aL~~A~l~~~dId~ViLVGGsTRiP~Vq~~v~~~Fgk~~~~~  359 (631)
T PRK00290        296 TRAKFEELTEDLVERTIEPCRQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKG  359 (631)
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             8999999899999999999999999808982221599991782456799999999968897779


No 255
>TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237   This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group..
Probab=60.60  E-value=6.5  Score=19.31  Aligned_cols=31  Identities=10%  Similarity=0.172  Sum_probs=15.5

Q ss_pred             CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             23442588431002368874322112100238
Q gi|254780489|r   74 DSISLTLLATSTPDHLLPPSSPLITHRLGLMQ  105 (325)
Q Consensus        74 ~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~  105 (325)
                      .-+|.|+.+...-.|+= +=--.||++||++-
T Consensus        88 rGvea~~~Ga~~S~YQK-~Rid~vCrelGlks  118 (227)
T TIGR00289        88 RGVEAVVIGAIESEYQK-SRIDKVCRELGLKS  118 (227)
T ss_pred             CCCCEEEECCEECCHHH-HHHHHHHHHHCCHH
T ss_conf             05454788534101123-35778877714100


No 256
>CHL00094 dnaK heat shock protein 70
Probab=59.78  E-value=12  Score=17.52  Aligned_cols=57  Identities=16%  Similarity=0.194  Sum_probs=36.6

Q ss_pred             CHHHHHHHC----CCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHH---HHHHHHHCCCCHHHH
Q ss_conf             145434320----100367898899740120012246305654138---999999719786570
Q gi|254780489|r  219 GADIFYNAV----KIMAQSAKQSLRKSDLQPQDINRFIPHQANSRI---IQKVCEKIGLSKRIM  275 (325)
Q Consensus       219 g~~v~~~~~----~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~---~~~~~~~lgi~~~~~  275 (325)
                      .|.-|+..+    ....+.++++|++++++++|||.+++-=++-+|   .+.+.+.+|.++.+.
T Consensus       296 tR~~FE~l~~~l~~r~~~~v~~~L~~a~l~~~dId~ViLVGGstRiP~V~~~l~~~fgk~~~~~  359 (622)
T CHL00094        296 TRAKFEELCSDLIDRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKSLLGKDPNQS  359 (622)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             3999998999999999999999999819998894399993881256789999999858996779


No 257
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=58.46  E-value=8.9  Score=18.42  Aligned_cols=65  Identities=25%  Similarity=0.273  Sum_probs=43.2

Q ss_pred             CHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHH-HHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             0036789889974012001224630565413899-99997197865700218540933000599999
Q gi|254780489|r  229 IMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQ-KVCEKIGLSKRIMVNSLKDFGNSSSASIPLSL  294 (325)
Q Consensus       229 ~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~-~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L  294 (325)
                      .+..-...+++++|+.++|++.+-+--+....++ .-+..+|+=++-.. .+..+|||+-|--..+|
T Consensus       475 AirAG~~tL~~kaGie~eDie~~ymAGAfGtyid~~~A~~iGliPd~~~-kV~q~GNtslagAr~aL  540 (614)
T COG3894         475 AIRAGHMTLIEKAGIELEDIERIYMAGAFGTYIDAKKAMVIGLIPDCDL-KVKQIGNTSLAGAREAL  540 (614)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHEEECCCCCCCCCHHHHHEEECCCCCCH-HHHHHCCCHHHHHHHHH
T ss_conf             8998899999980997554244032145523026567303505678515-46543660688899998


No 258
>TIGR02445 fadA acetyl-CoA C-acyltransferase FadA; InterPro: IPR012805    This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (2.3.1.16 from EC) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (IPR012799 from INTERPRO). The FadBA complex is the major complex active for beta-oxidation of fatty acids in Escherichia coli.; GO: 0003988 acetyl-CoA C-acyltransferase activity, 0006631 fatty acid metabolic process, 0016042 lipid catabolic process.
Probab=57.29  E-value=10  Score=17.99  Aligned_cols=93  Identities=13%  Similarity=0.109  Sum_probs=59.4

Q ss_pred             CCCHHHHHHHHHHHHHHHC-CCCCCCCCEEEEEEEEECCCCCC-CCCCCCCCC-CCC-CCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             8879999999999986430-13222344258843100236887-432211210-023-8633342101231012567657
Q gi|254780489|r   51 HETLTDIAIQAGDIALRNA-NIKKDSISLTLLATSTPDHLLPP-SSPLITHRL-GLM-QSGAIDLTGACAGFLYALVMAD  126 (325)
Q Consensus        51 ~e~~~~la~~Aa~~aL~~a-~~~~~dId~ii~~s~t~d~~~P~-~a~~v~~~L-g~~-~~~~~di~~~C~g~l~aL~~A~  126 (325)
                      +..+.||+..-.++.|++. .++|.+|+-|+.+.+.. .+.-+ ..++.+.-| .++ ...+..++--|.+.++||..+.
T Consensus        22 ~~raedlsahl~~~~l~rn~~~~~~~~~d~~WGCv~q-tleqG~n~ar~a~ll~~~P~~~~a~tv~rlCGssm~alh~~a  100 (385)
T TIGR02445        22 NTRAEDLSAHLIKKLLARNPKVDPAEVEDIYWGCVQQ-TLEQGFNIARNAALLAEVPHEVAAVTVNRLCGSSMQALHDAA  100 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             0136777899999998513355723443454554677-775347888888898734302222455544203589999887


Q ss_pred             HHHHCCCCEEEEEEE-CCC
Q ss_conf             887438850588620-122
Q gi|254780489|r  127 SYINSHQKPVLIIAA-NLL  144 (325)
Q Consensus       127 ~~i~~g~~~vLVv~~-e~~  144 (325)
                      ..+-++...+.+|++ |.+
T Consensus       101 ~~imt~~~~~~~~GGvehm  119 (385)
T TIGR02445       101 RAIMTGDAEVCLIGGVEHM  119 (385)
T ss_pred             HHHHCCCCCEEEECCCCCC
T ss_conf             8763178757998260000


No 259
>COG2073 CbiG Cobalamin biosynthesis protein CbiG [Coenzyme metabolism]
Probab=56.83  E-value=15  Score=16.99  Aligned_cols=84  Identities=15%  Similarity=0.210  Sum_probs=56.7

Q ss_pred             CHHHHHHHHHHHHCCCCCCCCEEEECC--CCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             003678988997401200122463056--541389999997197865700218540933000599999999980678999
Q gi|254780489|r  229 IMAQSAKQSLRKSDLQPQDINRFIPHQ--ANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQRKPFQKG  306 (325)
Q Consensus       229 ~~~~~i~~~l~~~gl~~~did~~i~Hq--~~~~~~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~G  306 (325)
                      .+...++++|+..++.+.+++.+.-+.  .+.+.+....+.++.|..-+-..+++.|=-+. +-|.++-.   .+.    
T Consensus       210 ~~~~~i~~~l~~~~l~~~~i~~i~s~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~gv~~v-ae~~al~~---~~~----  281 (298)
T COG2073         210 LLECAIEKALEGLGLAPKRIDGIASIALKADEPGLIQLAKKLGVPFITFEFVLKEVGVPGV-AEPAALLA---SGG----  281 (298)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHEEEHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCH-HHHHHHHH---CCC----
T ss_conf             9999999999875998556322340787535777899999809994411678887387303-56889985---798----


Q ss_pred             CEEEEEEECCCCCCC
Q ss_conf             899999861551020
Q gi|254780489|r  307 EKILTISCRRGNDRG  321 (325)
Q Consensus       307 d~vll~~~G~G~s~g  321 (325)
                       .+..-.++.|.|.+
T Consensus       282 -l~~~~~~~~~vTia  295 (298)
T COG2073         282 -LLVKKAKGNGVTIA  295 (298)
T ss_pred             -CEEEEECCCCEEEE
T ss_conf             -26665037741788


No 260
>TIGR01120 rpiB ribose 5-phosphate isomerase B; InterPro: IPR004785   Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology . This entry represents the RpiB enzyme.; GO: 0004751 ribose-5-phosphate isomerase activity, 0006098 pentose-phosphate shunt.
Probab=56.56  E-value=8.4  Score=18.58  Aligned_cols=75  Identities=7%  Similarity=0.005  Sum_probs=34.2

Q ss_pred             HHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             99999864301322234425884310023688743221121002386333421012310125676578874388505886
Q gi|254780489|r   60 QAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSHQKPVLII  139 (325)
Q Consensus        60 ~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g~~~vLVv  139 (325)
                      +-++.=|+.-++..-|.+..-  +..  .-+|.-|..|+.+.-- +.....| --|..+ -++.++++.+++  -|+.| 
T Consensus        15 e~ik~fL~~~g~kvid~GT~~--~er--tdYP~YAk~V~~av~~-g~~~~GI-LiCgTG-iGmSi~ANkF~G--IRAal-   84 (143)
T TIGR01120        15 EKIKEFLEDKGFKVIDVGTLA--SER--TDYPDYAKEVVRAVLE-GKAERGI-LICGTG-IGMSIAANKFKG--IRAAL-   84 (143)
T ss_pred             HHHHHHHCCCCEEEEEECCCC--CCC--CCCCHHHHHHHHHHHC-CCCCCCE-EEEECC-CCHHHHCCCCCC--CEEEE-
T ss_conf             889998613985798753788--676--3660689999999744-8766766-885053-211001012475--05663-


Q ss_pred             EECCC
Q ss_conf             20122
Q gi|254780489|r  140 AANLL  144 (325)
Q Consensus       140 ~~e~~  144 (325)
                      |.|.+
T Consensus        85 C~~~Y   89 (143)
T TIGR01120        85 CLDEY   89 (143)
T ss_pred             CCCHH
T ss_conf             26524


No 261
>pfam03377 Avirulence Xanthomonas avirulence protein, Avr/PthA.
Probab=55.76  E-value=15  Score=16.88  Aligned_cols=42  Identities=17%  Similarity=0.313  Sum_probs=26.2

Q ss_pred             HHHHHCCCCCCCCEEEECCCCCHHHHHHHHHC-------CCCHHHHHHH
Q ss_conf             89974012001224630565413899999971-------9786570021
Q gi|254780489|r  237 SLRKSDLQPQDINRFIPHQANSRIIQKVCEKI-------GLSKRIMVNS  278 (325)
Q Consensus       237 ~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~l-------gi~~~~~~~~  278 (325)
                      ++...|+++++|--+.-|-+++..++.+.+.+       ++.+++++.+
T Consensus       204 l~~~~gL~~~qVVaIASh~GgkqALe~v~~~l~~L~~~~~Ls~~qvvai  252 (289)
T pfam03377       204 LCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAI  252 (289)
T ss_pred             HHHHCCCCHHHEEHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHEEEH
T ss_conf             8751499988911002168727899999988687653502898784200


No 262
>TIGR01991 HscA Fe-S protein assembly chaperone HscA; InterPro: IPR010236   Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems.   The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly .   The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets.   In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen .   This entry represents the HscA chaperone protein from the SUF system. HscA (or Hsc66) is a specialised bacterial Hsp70-class molecular chaperone that participates in the assembly of iron-sulphur cluster proteins. HscA resembles DnaK, but belongs to a separate clade. HscA interacts with IscU, which is believed to serve as a template for Fe-S cluster formation. The HscA-IscU interaction is facilitated by the J-type co-chaperone protein HscB (or Hsc20), which binds to both HscA and IscU, bringing them into contact with each other. HscA recognises a conserved LPPVK sequence motif at positions 99-103 of IscU .; GO: 0005524 ATP binding, 0016887 ATPase activity, 0051082 unfolded protein binding, 0016226 iron-sulfur cluster assembly.
Probab=55.13  E-value=6.1  Score=19.48  Aligned_cols=104  Identities=18%  Similarity=0.262  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHCCCCCCCCCEEE-EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH--HHHHHCCCC
Q ss_conf             99999998643013222344258-843100236887432211210023863334210123101256765--788743885
Q gi|254780489|r   58 AIQAGDIALRNANIKKDSISLTL-LATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMA--DSYINSHQK  134 (325)
Q Consensus        58 a~~Aa~~aL~~a~~~~~dId~ii-~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A--~~~i~~g~~  134 (325)
                      ..+++|+||++||+++++|--|| ++.+|+   +|-.=..|++-.|-++--  ||+=   --+.||-.|  ++.+.+|.+
T Consensus       322 tl~~crrAlkDaGV~~~e~~~VvmVGGSTR---vp~Vr~~VaelFg~~PL~--~ldP---D~VVAlGAAiQAd~LaGNk~  393 (628)
T TIGR01991       322 TLLPCRRALKDAGVEKEEVKGVVMVGGSTR---VPKVREAVAELFGREPLT--DLDP---DKVVALGAAIQADVLAGNKR  393 (628)
T ss_pred             HHHHHHHHHHHCCCCHHHCCEEEEECCCCC---HHHHHHHHHHHHCCCCCC--CCCC---CHHHHHHHHHHHHHHCCCCC
T ss_conf             216788888752788325326578626546---167999998863778788--8875---14246558998755326888


Q ss_pred             --EEEE-------EEECCCC----CCCCCCC---CC----CCCCCCCCEEEEEECC
Q ss_conf             --0588-------6201224----4446222---44----3432544200112205
Q gi|254780489|r  135 --PVLI-------IAANLLS----RRINLED---KD----TAIIFGDAAGAVVLAP  170 (325)
Q Consensus       135 --~vLV-------v~~e~~S----~~~d~~d---~~----~~~lfGDgA~A~il~~  170 (325)
                        --|+       .+-|++-    +.+ |.+   |.    --++|=||=.||.+.-
T Consensus       394 ~~elLLLDV~PLSLGlETmGGL~EKiI-PRN~tiP~ARAQ~FTTFKDgQTAM~IhV  448 (628)
T TIGR01991       394 DEELLLLDVIPLSLGLETMGGLMEKII-PRNSTIPVARAQDFTTFKDGQTAMVIHV  448 (628)
T ss_pred             CCCEEHHCCCCHHCCHHHCCCCEEEEC-CCCCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf             864001101211100232067356652-7862998512665545455852668876


No 263
>PRK13411 molecular chaperone DnaK; Provisional
Probab=53.17  E-value=17  Score=16.61  Aligned_cols=50  Identities=22%  Similarity=0.365  Sum_probs=29.5

Q ss_pred             CHHHHHHHC----CCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHH---HHHHHHHC
Q ss_conf             145434320----100367898899740120012246305654138---99999971
Q gi|254780489|r  219 GADIFYNAV----KIMAQSAKQSLRKSDLQPQDINRFIPHQANSRI---IQKVCEKI  268 (325)
Q Consensus       219 g~~v~~~~~----~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~---~~~~~~~l  268 (325)
                      .|.-|+..+    ....+.++++|++++++++|||.++.-=++-+|   .+.+.+.+
T Consensus       295 TR~~FE~L~~~L~~rt~~pv~~aL~dA~l~~~dId~ViLVGGSTRIP~Vq~~v~~~F  351 (655)
T PRK13411        295 TRAKFEELAKDLVEATIEPVQQALKDAGLTPEDIDRIILVGGSTRIPAVQEAIQQFF  351 (655)
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             099999999999999998899999980998311789999888146579999999982


No 264
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; InterPro: IPR012062   Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases , . However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity . It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ  and other members of this family turned out to be erroneous , .; GO: 0009024 tagatose-6-phosphate kinase activity, 0019402 galactitol metabolic process.
Probab=52.36  E-value=3.3  Score=21.21  Aligned_cols=33  Identities=18%  Similarity=0.379  Sum_probs=18.8

Q ss_pred             HHHHHHHCCCCCC-CCEEEECCCCCHHHHHHHHHC
Q ss_conf             9889974012001-224630565413899999971
Q gi|254780489|r  235 KQSLRKSDLQPQD-INRFIPHQANSRIIQKVCEKI  268 (325)
Q Consensus       235 ~~~l~~~gl~~~d-id~~i~Hq~~~~~~~~~~~~l  268 (325)
                      ++.|++ ++|.+| |.|++||+-=....+.+.+.|
T Consensus       347 ~q~L~r-~ySySDRIRYYWP~P~~~~Av~~L~~nL  380 (430)
T TIGR02810       347 EQRLDR-HYSYSDRIRYYWPHPRIAAAVETLMANL  380 (430)
T ss_pred             HHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             999986-0772135335797078999999999853


No 265
>PRK09450 cyaA adenylate cyclase; Provisional
Probab=52.31  E-value=17  Score=16.52  Aligned_cols=15  Identities=7%  Similarity=0.009  Sum_probs=9.3

Q ss_pred             HHHHHHHCCCHHHEE
Q ss_conf             899988099976831
Q gi|254780489|r   23 SIIERHLNLKLGVIE   37 (325)
Q Consensus        23 ~~l~~~~~~~~~~i~   37 (325)
                      +.+.+.++|+.+.|.
T Consensus       353 ~~Lv~~WgWs~~~l~  367 (833)
T PRK09450        353 SQLVSEWGWSDELLA  367 (833)
T ss_pred             HHHHHHCCCCHHHHH
T ss_conf             999986699989998


No 266
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=52.24  E-value=17  Score=16.51  Aligned_cols=25  Identities=24%  Similarity=0.391  Sum_probs=16.6

Q ss_pred             EEEEEEEEECCCCCCCHHHHHHHHCCC
Q ss_conf             099999973588613888999880999
Q gi|254780489|r    6 SCILGFGHAVPNQCIHNSIIERHLNLK   32 (325)
Q Consensus         6 ~~I~g~g~~lP~~~i~n~~l~~~~~~~   32 (325)
                      --|.++..|.|...+  +++.+.+|.+
T Consensus         5 ~~~~~~~~y~~g~~~--~~~~~~~g~~   29 (359)
T PRK03158          5 EQLLGLRPYQPGKPI--EEVKREYGLS   29 (359)
T ss_pred             HHHCCCCCCCCCCCH--HHHHHHHCCC
T ss_conf             344389998999998--9999870999


No 267
>PTZ00340 O-sialoglycoprotein endopeptidase; Provisional
Probab=51.95  E-value=18  Score=16.49  Aligned_cols=33  Identities=30%  Similarity=0.284  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf             99999986430132223442588431002368874
Q gi|254780489|r   59 IQAGDIALRNANIKKDSISLTLLATSTPDHLLPPS   93 (325)
Q Consensus        59 ~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~   93 (325)
                      ....++||++++++++|||.|- .|.-| -+.++.
T Consensus        61 ~~lv~~aL~~a~i~~~did~IA-vT~gP-GL~g~L   93 (348)
T PTZ00340         61 LSLVQEALEEAGITLSDISLIC-YTKGP-GMGAPL   93 (348)
T ss_pred             HHHHHHHHHHCCCCHHCCCEEE-ECCCC-CCHHHH
T ss_conf             9999999998599841185799-72799-851658


No 268
>KOG2707 consensus
Probab=51.91  E-value=13  Score=17.34  Aligned_cols=30  Identities=17%  Similarity=0.099  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEEEEECCC
Q ss_conf             9999998643013222344258843100236
Q gi|254780489|r   59 IQAGDIALRNANIKKDSISLTLLATSTPDHL   89 (325)
Q Consensus        59 ~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~   89 (325)
                      .+..++||++||.+|.|+|+|- .|..|...
T Consensus        87 ~~~iqral~aa~~~p~dldaIA-VT~gPGl~  116 (405)
T KOG2707          87 PRLIQRALDAAGLSPKDLDAIA-VTRGPGLP  116 (405)
T ss_pred             HHHHHHHHHHCCCCCCCCEEEE-EECCCCCE
T ss_conf             8999999997089945511699-96389964


No 269
>TIGR00329 gcp metalloendopeptidase, putative, glycoprotease family; InterPro: IPR000905   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase from Pasteurella haemolytica (Mannheimia haemolytica).   O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues . Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 , . Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion , .   Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis . The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region .; GO: 0008450 O-sialoglycoprotein endopeptidase activity, 0006508 proteolysis.
Probab=50.87  E-value=18  Score=16.38  Aligned_cols=75  Identities=23%  Similarity=0.324  Sum_probs=39.1

Q ss_pred             HHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCC--CCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHCC----
Q ss_conf             9999986430132223442588431002368874--32211210023-8633342101231012567657887438----
Q gi|254780489|r   60 QAGDIALRNANIKKDSISLTLLATSTPDHLLPPS--SPLITHRLGLM-QSGAIDLTGACAGFLYALVMADSYINSH----  132 (325)
Q Consensus        60 ~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~--a~~v~~~Lg~~-~~~~~di~~~C~g~l~aL~~A~~~i~~g----  132 (325)
                      .=.++||+++|++..|||+|-| |.-| -+.|++  ...+++-|-+. +.|..-|+ =|.|=+.+     .+|..+    
T Consensus        59 ~L~~~Al~~~~~~~~~I~~IA~-t~~P-GL~g~L~vGat~Ar~La~~l~kPligv~-H~~GH~~~-----~~l~~~~~~~  130 (337)
T TIGR00329        59 PLLERALKESNVDISEIDLIAV-TSGP-GLGGALIVGATFARSLALSLDKPLIGVN-HLLGHIYA-----PLLDTNLNQL  130 (337)
T ss_pred             HHHHHHHHHHCCCCCCCCEEEE-ECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH-----HHHCCCCCCC
T ss_conf             9999999982887010257898-5587-9851468999999999898728955145-78999988-----7414777453


Q ss_pred             C-CE-EEEEEEC
Q ss_conf             8-50-5886201
Q gi|254780489|r  133 Q-KP-VLIIAAN  142 (325)
Q Consensus       133 ~-~~-vLVv~~e  142 (325)
                      . .. .|+|++-
T Consensus       131 ~~P~~~LlVSGG  142 (337)
T TIGR00329       131 QFPFVSLLVSGG  142 (337)
T ss_pred             CCCCEEEEEECC
T ss_conf             667316777540


No 270
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=50.81  E-value=10  Score=18.02  Aligned_cols=25  Identities=28%  Similarity=0.357  Sum_probs=11.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             2112100238633342101231012
Q gi|254780489|r   96 LITHRLGLMQSGAIDLTGACAGFLY  120 (325)
Q Consensus        96 ~v~~~Lg~~~~~~~di~~~C~g~l~  120 (325)
                      .|+-..++..+..+|+-..|.|...
T Consensus        64 ~i~~d~~~~~~~~~~~v~v~~g~~~   88 (328)
T COG4977          64 SIAPDGGLEAAPPIDILPVCGGLGP   88 (328)
T ss_pred             EEECCCCCCCCCCCEEEEEECCCCC
T ss_conf             6716876455676329998068775


No 271
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=50.78  E-value=18  Score=16.37  Aligned_cols=14  Identities=7%  Similarity=-0.033  Sum_probs=7.4

Q ss_pred             HHHHHHHHHCCCCC
Q ss_conf             99999864301322
Q gi|254780489|r   60 QAGDIALRNANIKK   73 (325)
Q Consensus        60 ~Aa~~aL~~a~~~~   73 (325)
                      +-.++.|++.|++-
T Consensus         2 e~v~~~L~~~gi~~   15 (148)
T cd04333           2 ERVRAFLAARGLDL   15 (148)
T ss_pred             HHHHHHHHHCCCCC
T ss_conf             77999999769996


No 272
>PRK09604 putative DNA-binding/iron metalloprotein/AP endonuclease; Reviewed
Probab=50.66  E-value=18  Score=16.35  Aligned_cols=33  Identities=21%  Similarity=0.215  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf             99999986430132223442588431002368874
Q gi|254780489|r   59 IQAGDIALRNANIKKDSISLTLLATSTPDHLLPPS   93 (325)
Q Consensus        59 ~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~   93 (325)
                      ..-.++||++++++++|||.|- .|.-| -+.|+.
T Consensus        56 ~~lv~~al~~a~i~~~~id~IA-vT~gP-GL~g~L   88 (335)
T PRK09604         56 PPLLEEALKEAGLSLEDIDAIA-VTAGP-GLVGAL   88 (335)
T ss_pred             HHHHHHHHHHCCCCHHHCCEEE-EECCC-CCCHHH
T ss_conf             9999999986599987897899-94799-961139


No 273
>pfam00814 Peptidase_M22 Glycoprotease family. The Peptidase M22 proteins are part of the HSP70-actin superfamily. The region represented here is an insert into the fold and is not found in the rest of the family (beyond the Peptidase M22 family). Included in this family are the Rhizobial NodU proteins and the HypF regulator. This region also contains the histidine dyad believed to coordinate the metal ion and hence provide catalytic activity. Interestingly the histidines are not well conserved, and there is a lack of experimental evidence to support peptidase activity as a general property of this family. There also appear to be instances of this domain outside of the HSP70-actin superfamily.
Probab=50.10  E-value=13  Score=17.36  Aligned_cols=34  Identities=18%  Similarity=0.218  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf             999999998643013222344258843100236887
Q gi|254780489|r   57 IAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPP   92 (325)
Q Consensus        57 la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~   92 (325)
                      --....+++|++++++++|||.|-+ |.-| -+.++
T Consensus        31 ~i~~~i~~~l~~a~i~~~did~IAv-t~GP-Gl~~~   64 (225)
T pfam00814        31 RLLPLIEEALAEAGLSLEDLDAIAV-TAGP-GLFTG   64 (225)
T ss_pred             HHHHHHHHHHHHCCCCHHHCCEEEE-ECCC-CHHHH
T ss_conf             9999999999984999656899998-0599-81886


No 274
>TIGR02316 propion_prpE propionate--CoA ligase; InterPro: IPR012694    This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterised members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.; GO: 0050218 propionate-CoA ligase activity, 0019629 propionate catabolic process 2-methylcitrate cycle.
Probab=49.80  E-value=19  Score=16.27  Aligned_cols=52  Identities=13%  Similarity=0.220  Sum_probs=39.0

Q ss_pred             CCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEC
Q ss_conf             997683111475088994898879999999999986430132223442588431002
Q gi|254780489|r   31 LKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPD   87 (325)
Q Consensus        31 ~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d   87 (325)
                      ++...|...+-.--++|.-.++|+  |...|..+-|++   .++.+-||..+|.|..
T Consensus        33 TP~~~~LD~s~~PF~~WF~~G~TN--LC~NA~DRhL~~---~ge~lALv~vSsET~~   84 (634)
T TIGR02316        33 TPYARVLDDSNPPFARWFVGGRTN--LCHNAVDRHLEK---RGEQLALVAVSSETGE   84 (634)
T ss_pred             CCHHHHHCCCCCCHHHHCCCCCCC--CHHHHHHHHHHC---CCCCEEEEEEECCCCC
T ss_conf             875787114577746740478434--227677888631---7761788887515786


No 275
>TIGR01341 aconitase_1 aconitate hydratase 1; InterPro: IPR006249   Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop , . Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) . Below is a description of some of the multi-functional activities associated with different aconitases.   Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway . The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA.    Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) , . As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated .   IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis . Although IRP2 is homologous to IRP1, IPR2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes . In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system.   Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica , . In S.enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress.   This entry represents bacterial aconitase A (AcnA), eukaryotic cytosolic aconitase (cAcn/IRP1), iron regulatory protein 2 (IRP2), and a few mitochondrial aconitases (certain mAcn proteins, but not the majority of these enzymes).   More information about these proteins can be found at Protein of the Month: Aconitase .; GO: 0051539 4 iron 4 sulfur cluster binding, 0008152 metabolic process.
Probab=49.24  E-value=19  Score=16.21  Aligned_cols=70  Identities=19%  Similarity=0.180  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHHHHCCCHHHEEECCCCCEE--EEECCCC----CHHHHHHHHHHHHHHHCCCCCCCC------CEEEEEEE
Q ss_conf             86138889998809997683111475088--9948988----799999999999864301322234------42588431
Q gi|254780489|r   17 NQCIHNSIIERHLNLKLGVIEQKTGIKYR--YWAEKHE----TLTDIAIQAGDIALRNANIKKDSI------SLTLLATS   84 (325)
Q Consensus        17 ~~~i~n~~l~~~~~~~~~~i~~~tGI~~R--~~~~~~e----~~~~la~~Aa~~aL~~a~~~~~dI------d~ii~~s~   84 (325)
                      +..|+.+|+++..+|..+...+ .-|.-|  ||.-.|=    -..|||  |-|+++.+-|-||+-|      ||||=+|+
T Consensus        39 G~~i~~eD~e~i~~W~~~~~~d-~Ei~FkP~RV~mQDFTGVPAVVDLA--~mR~am~~LGgDp~kINP~vPVDLVIDHSV  115 (896)
T TIGR01341        39 GFSIKEEDVEAILKWKKEELKD-VEIAFKPARVVMQDFTGVPAVVDLA--AMRDAMKNLGGDPEKINPLVPVDLVIDHSV  115 (896)
T ss_pred             CCCCCHHHHHHHHCCCCCCCCC-CCCCCCCCEEEEECCCCCCHHHHHH--HHHHHHHHHCCCCCCCCCCCCCCEEECCCE
T ss_conf             8420678998884431135466-1467564136752437872788889--999999982788120488765233775606


Q ss_pred             EECCC
Q ss_conf             00236
Q gi|254780489|r   85 TPDHL   89 (325)
Q Consensus        85 t~d~~   89 (325)
                      +=|+.
T Consensus       116 QVD~~  120 (896)
T TIGR01341       116 QVDYY  120 (896)
T ss_pred             EECCC
T ss_conf             75456


No 276
>KOG2708 consensus
Probab=48.59  E-value=12  Score=17.60  Aligned_cols=95  Identities=22%  Similarity=0.336  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCC-CCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CC
Q ss_conf             999999986430132223442588431002368874-3221121002-38633342101231012567657887438-85
Q gi|254780489|r   58 AIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPS-SPLITHRLGL-MQSGAIDLTGACAGFLYALVMADSYINSH-QK  134 (325)
Q Consensus        58 a~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~-a~~v~~~Lg~-~~~~~~di~~~C~g~l~aL~~A~~~i~~g-~~  134 (325)
                      -..-.+++|+.++++++|||.+.|. --|..-.|=. .+.+++-|-+ .+.+-..+| -|-|-   +  -....-+| ..
T Consensus        53 il~Lv~~al~ea~v~~~diD~icyT-KGPGmgaPL~~vaivaRtlsllw~kPlv~VN-HCigH---I--EMGR~iTgA~n  125 (336)
T KOG2708          53 ILGLVKQALEEAGVTSDDIDCICYT-KGPGMGAPLSVVAIVARTLSLLWNKPLVGVN-HCIGH---I--EMGREITGAQN  125 (336)
T ss_pred             HHHHHHHHHHHCCCCHHHCCEEEEC-CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH-HHHHH---H--HHCCEECCCCC
T ss_conf             9999999998739975228789972-7898787626689999999998279832301-21111---3--22102216889


Q ss_pred             E-EEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             0-58862012244446222443432544
Q gi|254780489|r  135 P-VLIIAANLLSRRINLEDKDTAIIFGD  161 (325)
Q Consensus       135 ~-vLVv~~e~~S~~~d~~d~~~~~lfGD  161 (325)
                      + +|-|++. .++.+-|.++. +-+||.
T Consensus       126 PvvLYvSGG-NTQvIAYse~r-YrIFGE  151 (336)
T KOG2708         126 PVVLYVSGG-NTQVIAYSEKR-YRIFGE  151 (336)
T ss_pred             CEEEEEECC-CEEEEEECCCE-EEEECC
T ss_conf             779999079-66999971541-454032


No 277
>PRK03321 putative aminotransferase; Provisional
Probab=48.36  E-value=20  Score=16.13  Aligned_cols=16  Identities=19%  Similarity=0.364  Sum_probs=10.7

Q ss_pred             EEEEEEEECCCCCCCH
Q ss_conf             9999997358861388
Q gi|254780489|r    7 CILGFGHAVPNQCIHN   22 (325)
Q Consensus         7 ~I~g~g~~lP~~~i~n   22 (325)
                      -|..+-.|.|.+.++.
T Consensus         8 ~i~~l~~Y~pg~~~~~   23 (352)
T PRK03321          8 ELAGLPAYVPGKTVPG   23 (352)
T ss_pred             HHHCCCCCCCCCCCCC
T ss_conf             6517999899899999


No 278
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011896    A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes..
Probab=48.28  E-value=20  Score=16.16  Aligned_cols=40  Identities=18%  Similarity=0.200  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEE-----EEECCCCCCCCCCCCCC
Q ss_conf             9999998643013222344258843-----10023688743221121
Q gi|254780489|r   59 IQAGDIALRNANIKKDSISLTLLAT-----STPDHLLPPSSPLITHR  100 (325)
Q Consensus        59 ~~Aa~~aL~~a~~~~~dId~ii~~s-----~t~d~~~P~~a~~v~~~  100 (325)
                      ..|.++||+.-+++|+++  +|++.     -||.|.--+..+-+|.|
T Consensus        13 L~AL~~AL~EL~LdP~qv--vVVSGIGCS~ktPhY~n~~g~h~LHGR   57 (302)
T TIGR02177        13 LSALQKALAELNLDPEQV--VVVSGIGCSAKTPHYVNVNGFHGLHGR   57 (302)
T ss_pred             HHHHHHHHHHHCCCCCCE--EEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             999999998628898527--998131311347730013664523356


No 279
>TIGR02651 RNase_Z ribonuclease Z; InterPro: IPR013471    All tRNA molecules are synthesised as long precursors with extra sequence at both the 5' and 3' ends, which undergo several processing steps to form the mature tRNA molecule. In many bacteria the tRNA precursors do not contain the CCA sequence which forms the 3' end of the mature tRNA and is essential for aminoacylation. In these organisms ribonucleotide Z cleaves the precursor to form a 3' end to which CCA is added. Species where all tRNA sequences already have the CCA tail, such as E. coli, do not generally posses this form of ribonuclease Z. ; GO: 0016891 endoribonuclease activity producing 5'-phosphomonoesters, 0042779 removal of tRNA 3'-trailer sequence.
Probab=46.91  E-value=8.7  Score=18.47  Aligned_cols=68  Identities=21%  Similarity=0.194  Sum_probs=46.4

Q ss_pred             CEEEEEEEEECCCCCC-CHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf             2099999973588613-888999880999768311147508899489887999999999998643013222344258843
Q gi|254780489|r    5 SSCILGFGHAVPNQCI-HNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLAT   83 (325)
Q Consensus         5 ~~~I~g~g~~lP~~~i-~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s   83 (325)
                      .+.|+|||.-+|.... ...-+.+   +.++       ..++...|-+|-+        +.=|.++++.|.+||.|.-.+
T Consensus         1 ~i~fLGTGg~~Pt~~Rn~~si~l~---~~~e-------~g~~~LFDCGEGT--------Q~Q~~~~~~~~~~i~~IFITH   62 (327)
T TIGR02651         1 EITFLGTGGGVPTKERNVSSIALK---LEDE-------RGELWLFDCGEGT--------QRQMLRSGISPMKIDRIFITH   62 (327)
T ss_pred             CEEEEECCCCCCCCCCCCCEEEEE---CHHH-------CCCEEEEECCCHH--------HHHHHHCCCCCCCCCEEEEEC
T ss_conf             958985277887756477589996---0224-------2874255477189--------999997168863111368706


Q ss_pred             EEECCCC
Q ss_conf             1002368
Q gi|254780489|r   84 STPDHLL   90 (325)
Q Consensus        84 ~t~d~~~   90 (325)
                      .-+|+.+
T Consensus        63 ~HGDHi~   69 (327)
T TIGR02651        63 LHGDHIL   69 (327)
T ss_pred             CCHHHHH
T ss_conf             6314554


No 280
>TIGR01418 PEP_synth phosphoenolpyruvate synthase; InterPro: IPR006319   This family represents phosphoenolpyruvate synthase; also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes. ; GO: 0008986 pyruvate water dikinase activity, 0006094 gluconeogenesis.
Probab=45.91  E-value=6.6  Score=19.25  Aligned_cols=32  Identities=19%  Similarity=0.433  Sum_probs=18.4

Q ss_pred             CCCCCCCCEEEEEEEEECCCCC----------------CCCCCCCCCCCCC
Q ss_conf             1322234425884310023688----------------7432211210023
Q gi|254780489|r   70 NIKKDSISLTLLATSTPDHLLP----------------PSSPLITHRLGLM  104 (325)
Q Consensus        70 ~~~~~dId~ii~~s~t~d~~~P----------------~~a~~v~~~Lg~~  104 (325)
                      .+.+-||  |+.--++||+ .|                |+|+.|+++||+|
T Consensus       426 ~~~~Gdi--LVT~mTDPDW-eP~MK~AsAIVTn~GG~TcHAAIVaRELGiP  473 (877)
T TIGR01418       426 KFEEGDI--LVTDMTDPDW-EPVMKRASAIVTNEGGRTCHAAIVARELGIP  473 (877)
T ss_pred             CCCCCCE--EEECCCCCCC-HHHCCCCCEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             4388646--8757874281-2122130304707887500899998755888


No 281
>pfam09887 DUF2114 Uncharacterized protein conserved in archaea (DUF2114). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=45.58  E-value=14  Score=17.09  Aligned_cols=41  Identities=12%  Similarity=0.220  Sum_probs=31.4

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCC-CCCEEEEEE-EEECCCCC
Q ss_conf             887999999999998643013222-344258843-10023688
Q gi|254780489|r   51 HETLTDIAIQAGDIALRNANIKKD-SISLTLLAT-STPDHLLP   91 (325)
Q Consensus        51 ~e~~~~la~~Aa~~aL~~a~~~~~-dId~ii~~s-~t~d~~~P   91 (325)
                      .|+.++|--....+++++|+++.+ |+|.|+-+| ++..+..|
T Consensus        64 resV~elVrdtl~e~~k~A~l~i~~DL~FVVRSTGVvAgf~sp  106 (448)
T pfam09887        64 RESVAELVRDTLLESLKKAGLDIENDLDFVVRSTGVVAGFDSP  106 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEECCCCH
T ss_conf             8899999999999999973888655766799506444056897


No 282
>pfam00862 Sucrose_synth Sucrose synthase. Sucrose synthases catalyse the synthesis of sucrose from UDP-glucose and fructose. This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family pfam00534.
Probab=44.93  E-value=18  Score=16.34  Aligned_cols=35  Identities=14%  Similarity=0.336  Sum_probs=14.6

Q ss_pred             HHHHHHHHHCCCCCCCCEEEECCCCCHHHH-HHHHHCCC
Q ss_conf             789889974012001224630565413899-99997197
Q gi|254780489|r  233 SAKQSLRKSDLQPQDINRFIPHQANSRIIQ-KVCEKIGL  270 (325)
Q Consensus       233 ~i~~~l~~~gl~~~did~~i~Hq~~~~~~~-~~~~~lgi  270 (325)
                      +.++.+++.+=.|   |.+|-+...+.+.. .++++||+
T Consensus       390 a~~ei~~el~g~P---DLIIGNYSDGNLVAsLla~klgV  425 (550)
T pfam00862       390 VASEIAAELQAKP---DLIIGNYSDGNLVASLLAHKLGV  425 (550)
T ss_pred             HHHHHHHHHCCCC---CEEEECCCCCHHHHHHHHHHCCC
T ss_conf             9999999848998---87984177722999999865387


No 283
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=44.82  E-value=23  Score=15.77  Aligned_cols=53  Identities=8%  Similarity=0.125  Sum_probs=37.3

Q ss_pred             CHHHHHHHHHHHHCCCCCCCCEEEECCCC---------CHHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf             00367898899740120012246305654---------1389999997197865700218540
Q gi|254780489|r  229 IMAQSAKQSLRKSDLQPQDINRFIPHQAN---------SRIIQKVCEKIGLSKRIMVNSLKDF  282 (325)
Q Consensus       229 ~~~~~i~~~l~~~gl~~~did~~i~Hq~~---------~~~~~~~~~~lgi~~~~~~~~l~~~  282 (325)
                      .+...+...|++.|...++| +++||.+.         ..|++.+.+..+++.++++.+-++.
T Consensus        71 ~~~~~m~~~l~~~gv~id~i-~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~  132 (181)
T COG0241          71 KLHNKMLKILASQGVKIDGI-LYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRL  132 (181)
T ss_pred             HHHHHHHHHHHHCCCCCCEE-EECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCH
T ss_conf             89999999999749703649-987889877776669975899999998288822017840768


No 284
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; InterPro: IPR006276   This group represents cobalamin-independent methionine synthase. A family of uncharacterised archaeal proteins having substantial homology to the C-terminal region of this family, are not included in this group, though they are contained in a larger family of vitamin-B12 independent methionine synthase.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process.
Probab=44.71  E-value=23  Score=15.76  Aligned_cols=10  Identities=20%  Similarity=0.421  Sum_probs=4.1

Q ss_pred             HHHHHHHHHC
Q ss_conf             3899999971
Q gi|254780489|r  259 RIIQKVCEKI  268 (325)
Q Consensus       259 ~~~~~~~~~l  268 (325)
                      -|.+.+.|+|
T Consensus       512 DMVEYFGE~L  521 (778)
T TIGR01371       512 DMVEYFGEKL  521 (778)
T ss_pred             CHHHHHHHHH
T ss_conf             3368888721


No 285
>pfam03702 UPF0075 Uncharacterized protein family (UPF0075). The proteins is this family are about 370 amino acids long and have no known function.
Probab=43.06  E-value=24  Score=15.60  Aligned_cols=62  Identities=21%  Similarity=0.173  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCC----------CCCCCCCCCCCCCCC---CCCCCCCCCCCC
Q ss_conf             999999999864301322234425884310023688----------743221121002386---333421012310
Q gi|254780489|r   56 DIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLP----------PSSPLITHRLGLMQS---GAIDLTGACAGF  118 (325)
Q Consensus        56 ~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P----------~~a~~v~~~Lg~~~~---~~~di~~~C~g~  118 (325)
                      ..-.+|+++.|.+++++++|||+|=++.-|- +..|          +.+..|++++|++-+   ..-|+..|--|.
T Consensus        68 ~~~a~ai~~~i~~~~~~~~~Id~Ig~HGQTi-~H~P~~~~~~TlQiG~~~~iA~~tgi~VV~DFR~~Dia~GGqGA  142 (363)
T pfam03702        68 LLFADAVNELLQKQNLKPSQIRAIGCHGQTV-RHEPNGRFPFTMQIGDPNLIAERTGITVVADFRRRDVAAGGQGA  142 (363)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEECCCCEE-EECCCCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHHHCCCCCC
T ss_conf             9999999999998399820224895588605-77889999644663979999788699773876633776689899


No 286
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=42.97  E-value=11  Score=17.69  Aligned_cols=117  Identities=16%  Similarity=0.242  Sum_probs=48.1

Q ss_pred             EEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEE--ECCCCCCCCC--CCCCCCCCCC-CCCCC
Q ss_conf             31114750889948988799999999999864301322234425884310--0236887432--2112100238-63334
Q gi|254780489|r   36 IEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLATST--PDHLLPPSSP--LITHRLGLMQ-SGAID  110 (325)
Q Consensus        36 i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t--~d~~~P~~a~--~v~~~Lg~~~-~~~~d  110 (325)
                      |.+..|.+-++|.=-+...-.+-.+.--..|+++  ...+|  |+.+.|+  |--.-|+.+-  .|.+-+.-++ .+.||
T Consensus       136 If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a--~~~~v--vLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D  211 (396)
T COG1448         136 IFEAAGLEVETYPYYDAETKGLDFDGMLADLKTA--PEGSV--VLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFD  211 (396)
T ss_pred             HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHC--CCCCE--EEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             9996698145310354666642579999999737--89988--9983677898899999999999999999769823663


Q ss_pred             CCCCCCCCHHHHHH---HHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             21012310125676---57887438850588620122444462224434325442001122
Q gi|254780489|r  111 LTGACAGFLYALVM---ADSYINSHQKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAVVL  168 (325)
Q Consensus       111 i~~~C~g~l~aL~~---A~~~i~~g~~~vLVv~~e~~S~~~d~~d~~~~~lfGDgA~A~il  168 (325)
                      +.  --||-.+|+.   +-+++.......+|+.+  +|+.+        -++|+=.+|..+
T Consensus       212 ~A--YQGF~~GleeDa~~lR~~a~~~~~~lva~S--~SKnf--------gLYgERVGa~~v  260 (396)
T COG1448         212 IA--YQGFADGLEEDAYALRLFAEVGPELLVASS--FSKNF--------GLYGERVGALSV  260 (396)
T ss_pred             HH--HHHHCCCHHHHHHHHHHHHHHCCCEEEEEH--HHHHH--------HHHHHCCCEEEE
T ss_conf             24--444212467789999999972985899710--00124--------434300231588


No 287
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase   A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () .   The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=42.89  E-value=15  Score=16.93  Aligned_cols=54  Identities=4%  Similarity=0.027  Sum_probs=22.6

Q ss_pred             CHHHHHHHHHHHHCCCCCC-CCEEEECCCCCHHHHHHHHHCCCCHHHHH-HHHHHC
Q ss_conf             0036789889974012001-22463056541389999997197865700-218540
Q gi|254780489|r  229 IMAQSAKQSLRKSDLQPQD-INRFIPHQANSRIIQKVCEKIGLSKRIMV-NSLKDF  282 (325)
Q Consensus       229 ~~~~~i~~~l~~~gl~~~d-id~~i~Hq~~~~~~~~~~~~lgi~~~~~~-~~l~~~  282 (325)
                      ..-+.++++|...|+=... =+-.++|+--.+=+...++..++|.-..+ ..++.|
T Consensus       176 ~Fy~~~~~aL~~~Gv~v~Qss~s~~~~~~~~~d~~r~~~~~~F~~~~~y~~~iPTY  231 (284)
T TIGR00417       176 EFYELLKKALNEDGVIVAQSSESPWLQLELIKDLKRKVKEVPFPITEYYTAAIPTY  231 (284)
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf             99999998529998899802788432748888788877526897530466407865


No 288
>pfam06406 StbA StbA protein. This family consists of several bacterial StbA plasmid stability proteins.
Probab=42.50  E-value=21  Score=16.04  Aligned_cols=30  Identities=17%  Similarity=0.224  Sum_probs=24.9

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             879999999999986430132223442588
Q gi|254780489|r   52 ETLTDIAIQAGDIALRNANIKKDSISLTLL   81 (325)
Q Consensus        52 e~~~~la~~Aa~~aL~~a~~~~~dId~ii~   81 (325)
                      ..-+++..-++.-||.++|+.|.+|+++..
T Consensus        72 yq~s~~N~l~vhHAL~~aGl~~~~V~lvvg  101 (318)
T pfam06406        72 YQYSDVNVLAIHHALLTSGLVPQPVDLVVT  101 (318)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             575367899999999972889870589965


No 289
>TIGR01485 SPP_plant-cyano sucrose phosphatase; InterPro: IPR012847   This entry describes the sucrose phosphate phosphohydrolase from plants and cyanobacteria (SPP). However, a closely related group of sequences from bacteria and archaea may prove to catalyze the same reaction. SPP is a member of the Class IIB subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants.    Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain, which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain..
Probab=42.39  E-value=25  Score=15.53  Aligned_cols=40  Identities=20%  Similarity=0.483  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHCCCC-------CCCCEEEECCCCC-HHHHHHHHHCCC
Q ss_conf             0367898899740120-------0122463056541-389999997197
Q gi|254780489|r  230 MAQSAKQSLRKSDLQP-------QDINRFIPHQANS-RIIQKVCEKIGL  270 (325)
Q Consensus       230 ~~~~i~~~l~~~gl~~-------~did~~i~Hq~~~-~~~~~~~~~lgi  270 (325)
                      +-+.+.+.|++.|+..       .|+| ++||-+++ ..+..+.++|.+
T Consensus       137 V~~~L~~~L~~~g~~vk~iYSsG~dlD-ilP~~s~KG~A~~YL~~kL~~  184 (257)
T TIGR01485       137 VIKQLEEELKKSGLDVKLIYSSGKDLD-ILPQGSGKGQALQYLLQKLKI  184 (257)
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCEEEE-EECCCCCHHHHHHHHHHHHHH
T ss_conf             999899888742897589975882377-502778856799999999984


No 290
>PRK09206 pyruvate kinase; Provisional
Probab=42.25  E-value=25  Score=15.52  Aligned_cols=30  Identities=27%  Similarity=0.288  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEEEE---CCCCC
Q ss_conf             9999999998067899989999986---15510
Q gi|254780489|r  290 IPLSLSLENQRKPFQKGEKILTISC---RRGND  319 (325)
Q Consensus       290 i~~~L~~~~~~g~i~~Gd~vll~~~---G~G~s  319 (325)
                      +-.+...+.+.|.+++||+|++++-   |+|.|
T Consensus       430 ~~~~~~~~~~~g~~~~GD~vVv~~G~~~~~G~T  462 (470)
T PRK09206        430 YRLGKELALQSGLAQKGDVVVMVSGALVPSGTT  462 (470)
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC
T ss_conf             999999999869989989899977777899877


No 291
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=41.51  E-value=25  Score=15.45  Aligned_cols=22  Identities=0%  Similarity=-0.058  Sum_probs=12.2

Q ss_pred             EEEEEEECCCCCCCHHHHHHHHCC
Q ss_conf             999997358861388899988099
Q gi|254780489|r    8 ILGFGHAVPNQCIHNSIIERHLNL   31 (325)
Q Consensus         8 I~g~g~~lP~~~i~n~~l~~~~~~   31 (325)
                      |.++-.|.|...  .+++.++.+.
T Consensus        16 i~~l~pY~~~~~--~~~~~~~~~~   37 (374)
T PRK05166         16 VRSLPPYNAGLT--IEEVRARYHV   37 (374)
T ss_pred             HCCCCCCCCCCC--HHHHHHHHCC
T ss_conf             447899999998--6999987389


No 292
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=41.17  E-value=24  Score=15.55  Aligned_cols=27  Identities=7%  Similarity=0.278  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf             678988997401200122463056541
Q gi|254780489|r  232 QSAKQSLRKSDLQPQDINRFIPHQANS  258 (325)
Q Consensus       232 ~~i~~~l~~~gl~~~did~~i~Hq~~~  258 (325)
                      ..++++|++++++++|||.+++.=++-
T Consensus       317 ~~i~~aL~~a~l~~~dId~ViLVGGsT  343 (657)
T PTZ00009        317 QPVEKVLQDAKMDKRSVHDVVLVGGST  343 (657)
T ss_pred             HHHHHHHHHHCCCHHHEEEEEECCCCC
T ss_conf             999999997379952514999808814


No 293
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of  threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=40.83  E-value=26  Score=15.38  Aligned_cols=49  Identities=18%  Similarity=0.230  Sum_probs=31.5

Q ss_pred             CCHHHHHHH----HHHCCCC---CCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
Q ss_conf             786570021----8540933---000599999999980678999899999861551
Q gi|254780489|r  270 LSKRIMVNS----LKDFGNS---SSASIPLSLSLENQRKPFQKGEKILTISCRRGN  318 (325)
Q Consensus       270 i~~~~~~~~----l~~~GN~---~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~  318 (325)
                      ++.+.....    .++.|-.   +++..+-++.++.+++.+.+|++|+++-.|+|+
T Consensus       267 V~d~e~~~a~~~l~~~egi~vepssg~~lAa~~~~~~~~~~~~~~~Vv~il~G~G~  322 (324)
T cd01563         267 VSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGHGL  322 (324)
T ss_pred             ECHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf             89999999999999982974527999999999999984799972989999698988


No 294
>pfam00012 HSP70 Hsp70 protein. Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region.
Probab=40.64  E-value=26  Score=15.36  Aligned_cols=57  Identities=16%  Similarity=0.207  Sum_probs=38.5

Q ss_pred             CHHHHHHHC----CCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHH---HHHHHHHCCCCHHHH
Q ss_conf             145434320----100367898899740120012246305654138---999999719786570
Q gi|254780489|r  219 GADIFYNAV----KIMAQSAKQSLRKSDLQPQDINRFIPHQANSRI---IQKVCEKIGLSKRIM  275 (325)
Q Consensus       219 g~~v~~~~~----~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~---~~~~~~~lgi~~~~~  275 (325)
                      .|+-|+..+    ..+...++++|+++|++++|||.+++.=++-+|   .+.+.+.+|.+..+.
T Consensus       293 tR~eFE~l~~~l~~r~~~~i~~~L~~a~l~~~dId~ViLvGGssRiP~Vq~~l~~~fg~~~~~~  356 (598)
T pfam00012       293 TRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKT  356 (598)
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             7999999999999999999987898728995451257861886567689999999868996668


No 295
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=40.59  E-value=26  Score=15.35  Aligned_cols=44  Identities=16%  Similarity=0.249  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHH---CCCCHHHHHH
Q ss_conf             678988997401200122463056541389999997---1978657002
Q gi|254780489|r  232 QSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEK---IGLSKRIMVN  277 (325)
Q Consensus       232 ~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~---lgi~~~~~~~  277 (325)
                      +.+.+.+.+....++|.+.++|  +...|++++.+.   +|+|++++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~vYlC--GPp~Mv~a~~~~L~~~Gv~~~~I~~  280 (283)
T cd06188         234 QVLLENYLKKHPAPEDIEFYLC--GPPPMNSAVIKMLDDLGVPRENIAF  280 (283)
T ss_pred             HHHHHHHHHHCCCCCCCEEEEE--CCHHHHHHHHHHHHHCCCCHHHEEE
T ss_conf             8999999964899678799994--9899999999999985998899573


No 296
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=40.49  E-value=26  Score=15.35  Aligned_cols=20  Identities=10%  Similarity=0.067  Sum_probs=11.6

Q ss_pred             EEEEEEEEECCCCCCCHHHH
Q ss_conf             09999997358861388899
Q gi|254780489|r    6 SCILGFGHAVPNQCIHNSII   25 (325)
Q Consensus         6 ~~I~g~g~~lP~~~i~n~~l   25 (325)
                      -.|..+.-|.|.+.-.-+++
T Consensus         7 p~i~~l~pY~~~~~~~~~~i   26 (353)
T PRK05387          7 PIVRQLEPYVPGEQPKLANL   26 (353)
T ss_pred             CCCCCCCCCCCCCCCCCCCE
T ss_conf             44346899999876799984


No 297
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=40.32  E-value=24  Score=15.64  Aligned_cols=33  Identities=12%  Similarity=0.186  Sum_probs=12.5

Q ss_pred             HHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             4301322234425884310023688743221121002
Q gi|254780489|r   67 RNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGL  103 (325)
Q Consensus        67 ~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~  103 (325)
                      +.+++.+.|- .+|.+.+.+   .-..+..+++.+|+
T Consensus        98 ~~~~i~~g~~-VlI~gg~G~---vG~~aiqlak~~Ga  130 (288)
T smart00829       98 DLARLRPGES-VLIHAAAGG---VGQAAIQLAQHLGA  130 (288)
T ss_pred             HHCCCCCCCE-EEEECCCCH---HHHHHHHHHHHCCC
T ss_conf             7508899999-999789867---77999999997398


No 298
>pfam01890 CbiG_C Cobalamin synthesis G C-terminus. Members of this family are involved in cobalamin synthesis. A member from Synechocystis sp. PCC 6803 has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. This family is the C-terminal region, and the mid- and N-termival parts are conserved independently in other families.
Probab=38.71  E-value=28  Score=15.17  Aligned_cols=42  Identities=12%  Similarity=0.360  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHCCCCCCCCEEEECC--CCCHHHHHHHHHCCCC
Q ss_conf             03678988997401200122463056--5413899999971978
Q gi|254780489|r  230 MAQSAKQSLRKSDLQPQDINRFIPHQ--ANSRIIQKVCEKIGLS  271 (325)
Q Consensus       230 ~~~~i~~~l~~~gl~~~did~~i~Hq--~~~~~~~~~~~~lgi~  271 (325)
                      +...+.++|++.++++++|+.+....  .+..-+..+++.+|+|
T Consensus        17 i~~~i~~~l~~~~l~~~~i~~iasid~K~~E~gl~~~a~~l~~p   60 (121)
T pfam01890        17 IEAAIEEALAEAGLSPEAVAAIATIDLKADEPGLLELAARLGVP   60 (121)
T ss_pred             HHHHHHHHHHHCCCCHHHCCEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             99999999998599978840568632147988999999992998


No 299
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297   LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=38.07  E-value=18  Score=16.34  Aligned_cols=76  Identities=17%  Similarity=0.200  Sum_probs=35.6

Q ss_pred             CCCCCEE-EEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf             9666209-999997358861388899988099976831114750889948988799999999999864301322234425
Q gi|254780489|r    1 MIKSSSC-ILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLT   79 (325)
Q Consensus         1 M~~~~~~-I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~i   79 (325)
                      |-..+.| +..+|...|+-.+..++|..  | ..|||.  .|||+-.=+.=+.|. +.+-.=|+++|  .|..+  +--+
T Consensus       227 Mstgk~y~V~evG~~~P~~~~~~~~L~a--G-eVGy~~--AgIK~v~D~~VGDTi-T~~~~Pa~epl--pGF~~--~KP~  296 (598)
T TIGR01393       227 MSTGKEYEVDEVGVFTPKLEVKTQELSA--G-EVGYII--AGIKDVSDVKVGDTI-TSVKNPAKEPL--PGFKE--VKPM  296 (598)
T ss_pred             EECCCEEEEEEEEEECCCCCCCCCCEEC--C-CEEEEE--EEEEECCCEECCCEE-ECCCCCCCCCC--CCCCC--CCCE
T ss_conf             5348766675500343452014662001--6-305999--865310411205445-25678737678--88612--5765


Q ss_pred             EEEEEEE
Q ss_conf             8843100
Q gi|254780489|r   80 LLATSTP   86 (325)
Q Consensus        80 i~~s~t~   86 (325)
                      +||+..|
T Consensus       297 VFaGlYP  303 (598)
T TIGR01393       297 VFAGLYP  303 (598)
T ss_pred             EEECCCC
T ss_conf             8601258


No 300
>KOG1015 consensus
Probab=37.97  E-value=20  Score=16.13  Aligned_cols=90  Identities=14%  Similarity=0.227  Sum_probs=45.2

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEE------EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             750889948988799999999999864301322234425884------31002368874322112100238633342101
Q gi|254780489|r   41 GIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLA------TSTPDHLLPPSSPLITHRLGLMQSGAIDLTGA  114 (325)
Q Consensus        41 GI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~------s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~  114 (325)
                      +|..-++.++++.+..-+++.-|..+.+  +.|.+++-|=|-      |...-.-.|+..|++++-+|+...  |.|   
T Consensus       641 ~it~~lVld~deet~e~~VqV~rslv~k--LKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKT--lQV---  713 (1567)
T KOG1015         641 PITTKLVLDEDEETKEPLVQVHRSLVIK--LKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKT--LQV---  713 (1567)
T ss_pred             CCCEEEEECCHHHHCCCHHHCCHHHHHH--CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCE--EHH---
T ss_conf             5310378544143042202145767764--472201302589999999988612799863177875045640--014---


Q ss_pred             CCCCHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             231012567657887438850588620
Q gi|254780489|r  115 CAGFLYALVMADSYINSHQKPVLIIAA  141 (325)
Q Consensus       115 C~g~l~aL~~A~~~i~~g~~~vLVv~~  141 (325)
                       -.|++-+-++   .+.|-++||||+.
T Consensus       714 -vtflhTvL~c---~klg~ktaLvV~P  736 (1567)
T KOG1015         714 -VTFLHTVLLC---DKLGFKTALVVCP  736 (1567)
T ss_pred             -HHHHHHHHHH---HCCCCCEEEEECC
T ss_conf             -6788899874---2047856899723


No 301
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=37.54  E-value=29  Score=15.05  Aligned_cols=30  Identities=17%  Similarity=0.131  Sum_probs=24.8

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCEEEEEEEC
Q ss_conf             000599999999980678999899999861
Q gi|254780489|r  286 SSASIPLSLSLENQRKPFQKGEKILTISCR  315 (325)
Q Consensus       286 ~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G  315 (325)
                      .++-.+..|.+++++|++++|++|+++=.|
T Consensus       277 YTgKa~~gl~~~i~~g~~~~~~~IlfiHTG  306 (307)
T cd06449         277 YEGKSMQGMIDLVRNGEFKEGSKVLFIHLG  306 (307)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCEEEEECC
T ss_conf             789999999999986999997918999599


No 302
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=37.32  E-value=18  Score=16.48  Aligned_cols=71  Identities=8%  Similarity=0.086  Sum_probs=38.2

Q ss_pred             CCCHHHHHHHHHHHH--CCCCCCCCE-EEECCCCCHH---HHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             010036789889974--012001224-6305654138---99999971978657002185409330005999999999
Q gi|254780489|r  227 VKIMAQSAKQSLRKS--DLQPQDINR-FIPHQANSRI---IQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLEN  298 (325)
Q Consensus       227 ~~~~~~~i~~~l~~~--gl~~~did~-~i~Hq~~~~~---~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~~  298 (325)
                      +..+.+.++++|+++  .+..+.+|. ++..=++.++   .+.+.+.+|+|.....+ -.+.==.|+|-..=.++.+.
T Consensus       255 ~~~i~~~i~~~L~~~~pel~~di~d~gIvLvGG~srip~i~~~l~~~~~~~v~~~~n-P~~~Va~GAa~~~~~i~~~~  331 (335)
T PRK13929        255 LLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSQEIVVPVHVAAN-PLESVAIGTGRSLEVIDKLQ  331 (335)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999838843325432782999774043267999999997819877988-67679998999997699999


No 303
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit; InterPro: IPR012735    Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated 2.7.1.29 from EC. By contract, Escherichia coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex..
Probab=37.16  E-value=19  Score=16.27  Aligned_cols=74  Identities=18%  Similarity=0.199  Sum_probs=43.4

Q ss_pred             CCCCCCCCCEE----EEEEEEECCCCCCCCCCCCCCCCC-C-CCCCCCC----CCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             01322234425----884310023688743221121002-3-8633342----101231012567657887438850588
Q gi|254780489|r   69 ANIKKDSISLT----LLATSTPDHLLPPSSPLITHRLGL-M-QSGAIDL----TGACAGFLYALVMADSYINSHQKPVLI  138 (325)
Q Consensus        69 a~~~~~dId~i----i~~s~t~d~~~P~~a~~v~~~Lg~-~-~~~~~di----~~~C~g~l~aL~~A~~~i~~g~~~vLV  138 (325)
                      +|++|.-.++|    +.|-..+|-+.|++|..|-+.+.- . .-..|=|    ..--..|++|.++|+.   -|..-.+|
T Consensus        52 SGHePAH~GYVG~GML~AAi~G~vF~PP~A~~il~~~r~~~~gkGVf~IiKNF~AD~~~F~~A~~qar~---EG~~~~~~  128 (328)
T TIGR02362        52 SGHEPAHLGYVGEGMLSAAIMGDVFVPPTAQDILEAIRQVDRGKGVFVIIKNFEADLSEFSQAIEQARQ---EGRDIKYI  128 (328)
T ss_pred             CCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHH---CCCCEEEE
T ss_conf             876667665203004333100674799985899999987524976899971767778999999999986---38950379


Q ss_pred             EEECCCC
Q ss_conf             6201224
Q gi|254780489|r  139 IAANLLS  145 (325)
Q Consensus       139 v~~e~~S  145 (325)
                      |+.|-.|
T Consensus       129 iv~DDiS  135 (328)
T TIGR02362       129 IVHDDIS  135 (328)
T ss_pred             EECCCCC
T ss_conf             9727533


No 304
>TIGR02478 6PF1K_euk 6-phosphofructokinase; InterPro: IPR009161    Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (2.7.1.11 from EC) in which two tandem copies of the phosphofructokinase are found . Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).   Phosphofructokinase (PFK) catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate, which then enters the Embden-Meyerhof pathway. PFK is a key regulatory enzyme in glycolysis.   For additional information please see , , .; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005737 cytoplasm.
Probab=37.12  E-value=29  Score=15.01  Aligned_cols=62  Identities=13%  Similarity=0.057  Sum_probs=31.2

Q ss_pred             CCEEEEEEEEECC-CCCCCHHHHHHHHCCCHHHEEECCCCCEE-----EEECCC-------CCHHHHHHHHHHHHHHHCC
Q ss_conf             6209999997358-86138889998809997683111475088-----994898-------8799999999999864301
Q gi|254780489|r    4 SSSCILGFGHAVP-NQCIHNSIIERHLNLKLGVIEQKTGIKYR-----YWAEKH-------ETLTDIAIQAGDIALRNAN   70 (325)
Q Consensus         4 ~~~~I~g~g~~lP-~~~i~n~~l~~~~~~~~~~i~~~tGI~~R-----~~~~~~-------e~~~~la~~Aa~~aL~~a~   70 (325)
                      .++.|++=|+-=- .++||.+++=+.       |.++.++.+|     ||=.-+       -=++-|+++|.+..|+.  
T Consensus       243 ~~iViVAEGA~D~~~~pItse~VK~v-------l~~~L~lDtRiT~LGHVQRGG~PsA~DR~Lat~~GvEAV~avL~~--  313 (777)
T TIGR02478       243 KNIVIVAEGAIDRELNPITSEDVKDV-------LVERLGLDTRITVLGHVQRGGAPSAYDRILATLQGVEAVLAVLES--  313 (777)
T ss_pred             CEEEEEEECEECCCCCCCCHHHHHHH-------HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--
T ss_conf             40799842105467779688989888-------644018402476605224688722899999986449999999726--


Q ss_pred             CCCCC
Q ss_conf             32223
Q gi|254780489|r   71 IKKDS   75 (325)
Q Consensus        71 ~~~~d   75 (325)
                       +|+.
T Consensus       314 -tpe~  317 (777)
T TIGR02478       314 -TPET  317 (777)
T ss_pred             -CCCC
T ss_conf             -8776


No 305
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=37.07  E-value=21  Score=15.96  Aligned_cols=59  Identities=14%  Similarity=0.033  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHCCC-CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             9999999998643013-2223442588431002368874322112100238633342101231012
Q gi|254780489|r   56 DIAIQAGDIALRNANI-KKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLY  120 (325)
Q Consensus        56 ~la~~Aa~~aL~~a~~-~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~  120 (325)
                      .-|.+|.+++.++.+. +++|.|++|+-.--+-.+      ...+.+.-.+.+.+.||.|-.||+.
T Consensus         5 ~~a~~a~~~l~~~y~~~~~~eaDliIvlGGDGT~L------~a~r~~~~~~~PilGIN~G~lGFL~   64 (246)
T PRK04761          5 PEAQAALEELVKRYGDVPIEEADVIVALGGDGFML------QTLHRYMNSGKPVYGMNRGTVGFLM   64 (246)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHCCEEEEECCCHHHH------HHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf             89999999999985899965799999989879999------9999874149937989779777544


No 306
>cd04493 BRCA2DBD_OB1 BRCA2DBD_OB1: A subfamily of OB folds corresponding to the first OB fold (OB1) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated repair of double-strand DNA breaks. It stimulates the displacement of Replication protein A (RPA), the most abundant eukaryotic ssDNA binding protein. It also facilitates filament formation. Mutations that map throughout the BRCA2 protein are associated with breast cancer susceptibility. BRCA2 is a large nuclear protein and its most conserved region is the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro, and is composed of five structural domains, three of which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and OB3 are arranged in tandem, and their mode of binding can be considered qualitatively similar to two OB folds of RPA1, DBD-A and DBD-B (the major DBDs of RPA). BRCA2DBD OB1 binds DNA weakly.
Probab=36.32  E-value=30  Score=14.93  Aligned_cols=37  Identities=22%  Similarity=0.230  Sum_probs=20.2

Q ss_pred             CCCCCCCCCCCHHHHHHH-HHHHHCCC----CEEEEEEECCC
Q ss_conf             334210123101256765-78874388----50588620122
Q gi|254780489|r  108 AIDLTGACAGFLYALVMA-DSYINSHQ----KPVLIIAANLL  144 (325)
Q Consensus       108 ~~di~~~C~g~l~aL~~A-~~~i~~g~----~~vLVv~~e~~  144 (325)
                      ...++.|..+.-..|+.. ..+++.|.    .+..|.++|..
T Consensus        24 ~ieltDGWY~i~a~lD~~L~~~l~~Gkl~vGqKL~i~GA~L~   65 (100)
T cd04493          24 IIELTDGWYSIRAQLDPPLTNLVRKGKLRVGQKLRICGAELL   65 (100)
T ss_pred             EEEEECCCEEEEEECCHHHHHHHHCCCCCCCCEEEEECCEEE
T ss_conf             799954818986872998999998597214758999887864


No 307
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=36.18  E-value=31  Score=14.91  Aligned_cols=44  Identities=20%  Similarity=0.439  Sum_probs=28.6

Q ss_pred             HHHHHHHCCCCCCCCEEEECCCCCHHHHHHH---HHCCCCHHHHHHHHHHCC
Q ss_conf             9889974012001224630565413899999---971978657002185409
Q gi|254780489|r  235 KQSLRKSDLQPQDINRFIPHQANSRIIQKVC---EKIGLSKRIMVNSLKDFG  283 (325)
Q Consensus       235 ~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~---~~lgi~~~~~~~~l~~~G  283 (325)
                      +..|++. -.++|.++++|-+  ..|++++.   +.+|+++|++.  +++||
T Consensus       361 ~~yL~dh-~~ped~e~YlCGP--P~Mi~Av~~~L~~lGV~~E~I~--~D~FG  407 (408)
T PRK05464        361 ENYLKDH-PAPEDCEYYMCGP--PMMNAAVIKMLKDLGVEDENIL--LDDFG  407 (408)
T ss_pred             HHHHHHC-CCCCCCEEEEECC--HHHHHHHHHHHHHCCCCHHHEE--ECCCC
T ss_conf             9898637-8855868999899--8999999999998699989964--33568


No 308
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=35.61  E-value=22  Score=15.89  Aligned_cols=62  Identities=21%  Similarity=0.208  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCC----------CCCCCCCCCCCCCCCCCC---CCCCCCCC
Q ss_conf             9999999999864301322234425884310023688----------743221121002386333---42101231
Q gi|254780489|r   55 TDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLP----------PSSPLITHRLGLMQSGAI---DLTGACAG  117 (325)
Q Consensus        55 ~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P----------~~a~~v~~~Lg~~~~~~~---di~~~C~g  117 (325)
                      ..+-.+|++.+|++-++.|+||+.|.+..-|= +..|          ....+++++.|++.+..|   |+-.+--|
T Consensus        72 ~~~~a~av~~ll~~~~l~~~~i~~iG~HGQTV-~H~p~~~~~~t~Qlgd~~~iA~~TGi~~v~dfR~~D~a~GGqG  146 (371)
T COG2377          72 ALLHAQAVAALLAEQGLLPRDIRAIGCHGQTV-LHRPPGHAPDTVQLGDGPLIAELTGITVVGDFRRRDMAAGGQG  146 (371)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHCCEEECCCCCC-CCCCCCCCCEEEECCCHHHHHHHHCCCCHHHHCCCCCCCCCCC
T ss_conf             99999999999997299977682640478422-5789988880223486377799869764766123344568888


No 309
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.17  E-value=32  Score=14.81  Aligned_cols=13  Identities=8%  Similarity=0.302  Sum_probs=7.2

Q ss_pred             CCCCEEEEEEECC
Q ss_conf             9998999998615
Q gi|254780489|r  304 QKGEKILTISCRR  316 (325)
Q Consensus       304 ~~Gd~vll~~~G~  316 (325)
                      +.|+.|=++.+|.
T Consensus       651 kY~~~VRVV~ig~  663 (879)
T COG0013         651 KYGDEVRVVEIGD  663 (879)
T ss_pred             CCCCEEEEEEECC
T ss_conf             6798689999899


No 310
>PRK13980 NAD synthetase; Provisional
Probab=34.95  E-value=16  Score=16.74  Aligned_cols=71  Identities=21%  Similarity=0.292  Sum_probs=36.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--------HHHH-------CCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             74322112100238633342101231012567657--------8874-------38850588620122444462224434
Q gi|254780489|r   92 PSSPLITHRLGLMQSGAIDLTGACAGFLYALVMAD--------SYIN-------SHQKPVLIIAANLLSRRINLEDKDTA  156 (325)
Q Consensus        92 ~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~--------~~i~-------~g~~~vLVv~~e~~S~~~d~~d~~~~  156 (325)
                      ..|..+++.||++. ...||+..+.+|...+....        ..++       ++..+.||+++...|-..    -.-.
T Consensus        73 ~dA~~la~~lgi~~-~~i~I~~~~~~~~~~~~~~~~~~~~NiqaR~Rm~~Ly~~An~~~~lVlgTgNksE~~----~Gy~  147 (264)
T PRK13980         73 EDALLVAERLGIEY-KVIEITPIVDAFFSAVPDADRLRRGNIMARTRMVLLYDYANRDNRLVLGTSNKSELL----LGYF  147 (264)
T ss_pred             HHHHHHHHHHCCCE-EEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHH----HHHC
T ss_conf             99999999869984-998279999999986310006688875898999999998643397765588674798----7210


Q ss_pred             CCCCCCEEEEE
Q ss_conf             32544200112
Q gi|254780489|r  157 IIFGDAAGAVV  167 (325)
Q Consensus       157 ~lfGDgA~A~i  167 (325)
                      +.+||+++.+.
T Consensus       148 TkyGD~~~d~~  158 (264)
T PRK13980        148 TKYGDGAVDIN  158 (264)
T ss_pred             CCCCCCCCCHH
T ss_conf             01687665624


No 311
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK):  Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors.  Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state.  PK exists as several different isozymes, depending on organism and tissue type.  In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung.  PK forms a homotetramer, with each subunit containing three domains.  The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=34.69  E-value=32  Score=14.76  Aligned_cols=24  Identities=8%  Similarity=0.425  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf             999999999806789998999998
Q gi|254780489|r  290 IPLSLSLENQRKPFQKGEKILTIS  313 (325)
Q Consensus       290 i~~~L~~~~~~g~i~~Gd~vll~~  313 (325)
                      +-.+++.+.+.|.+++||+|++++
T Consensus       440 i~~a~~~l~~~g~v~~GD~VVv~a  463 (480)
T cd00288         440 LKAAVNVAKEKGLLKKGDLVVVVQ  463 (480)
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf             999999999869989989899962


No 312
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=34.40  E-value=27  Score=15.23  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf             9999999999864301322234425
Q gi|254780489|r   55 TDIAIQAGDIALRNANIKKDSISLT   79 (325)
Q Consensus        55 ~~la~~Aa~~aL~~a~~~~~dId~i   79 (325)
                      ..=|.+|.++||+.+|++.+||+.+
T Consensus       178 ~~sa~~~~~~al~~ag~~~~di~ai  202 (404)
T TIGR03286       178 IESAEEAVERALEEAGVSLEDVEAI  202 (404)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             8889999999999739757765321


No 313
>TIGR00263 trpB tryptophan synthase, beta subunit; InterPro: IPR006654   Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan , :  L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H_2O  It has two functional domains, each found in bacteria and plants on a separate subunit: alpha chain (IPR002028 from INTERPRO) is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and beta chain is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together on a single multifunctional protein .   The beta chain of the enzyme, represented here, requires pyridoxal-phosphate as a cofactor. The pyridoxal-phosphate group is attached to a lysine residue. The region around this lysine residue also contains two histidine residues which are part of the pyridoxal-phosphate binding site.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process.
Probab=33.97  E-value=33  Score=14.68  Aligned_cols=129  Identities=19%  Similarity=0.180  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC--------CC-CCCCCCCCCCCCC-HHHHHHHHHH
Q ss_conf             999999864301322234425884310023688743221121002--------38-6333421012310-1256765788
Q gi|254780489|r   59 IQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGL--------MQ-SGAIDLTGACAGF-LYALVMADSY  128 (325)
Q Consensus        59 ~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~--------~~-~~~~di~~~C~g~-l~aL~~A~~~  128 (325)
                      -+|+.+||++|==+.+|.=+|| +|..+++.+|.+...-|.-+|-        .. -.-=|.--||-|+ .||+=+=..|
T Consensus       167 KDA~N~AlrDWv~~~~dThYvl-GSa~GPhPfP~mVr~FQsvIG~E~k~Qi~~~e~grLPD~viACvGGGSNAiG~F~~F  245 (412)
T TIGR00263       167 KDAVNEALRDWVTSVDDTHYVL-GSAVGPHPFPTMVRDFQSVIGEEAKEQILEKEEGRLPDAVIACVGGGSNAIGIFYAF  245 (412)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEE-EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCHHH
T ss_conf             7899999987413637511232-111487767221178877898999999999962799738998516772035201232


Q ss_pred             HH--------CCCCE----EEEEEECCCCC--CCCCC--CCCCCCCCCCCE-EEEEECCCCC---CCCCCCEEEEEEECC
Q ss_conf             74--------38850----58862012244--44622--244343254420-0112205765---444531135532136
Q gi|254780489|r  129 IN--------SHQKP----VLIIAANLLSR--RINLE--DKDTAIIFGDAA-GAVVLAPSPL---KDKSGILGIELTSDG  188 (325)
Q Consensus       129 i~--------~g~~~----vLVv~~e~~S~--~~d~~--d~~~~~lfGDgA-~A~il~~~~~---~~~~~il~~~~~s~~  188 (325)
                      |+        +|...    |=+|+.|..=.  .+|-.  ....+..+.-|- .-++=+....   .|...|..++-.|.|
T Consensus       246 i~saslPGaPaGD~~PaPDV~LiGVEAgG~rlGidt~aGy~~HaA~l~~G~t~Gv~HG~kt~lLQDedGQi~~~hSvSAG  325 (412)
T TIGR00263       246 IDSASLPGAPAGDPSPAPDVELIGVEAGGLRLGIDTDAGYDKHAATLSKGSTVGVLHGMKTYLLQDEDGQILEAHSVSAG  325 (412)
T ss_pred             HCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             12335788888645888860589873376401545446762125301368632364133201020656760321127851


No 314
>PRK03566 consensus
Probab=33.69  E-value=33  Score=14.66  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=11.6

Q ss_pred             EEEEEEECCCCCCCHHHHHHHHCC
Q ss_conf             999997358861388899988099
Q gi|254780489|r    8 ILGFGHAVPNQCIHNSIIERHLNL   31 (325)
Q Consensus         8 I~g~g~~lP~~~i~n~~l~~~~~~   31 (325)
                      |..+--|.|...+  ++++++.|.
T Consensus        10 ~~~l~~y~~g~~~--~~~~~~~g~   31 (365)
T PRK03566         10 VRALSPYQPGKPI--EELARELGL   31 (365)
T ss_pred             HCCCCCCCCCCCH--HHHHHHHCC
T ss_conf             5277998899898--999987099


No 315
>PRK06851 hypothetical protein; Provisional
Probab=33.62  E-value=33  Score=14.65  Aligned_cols=55  Identities=13%  Similarity=0.225  Sum_probs=31.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHC--------CCCCCCCCEEEEE--------EEEECCCCCCCCCCCCCCCCC
Q ss_conf             898879999999999986430--------1322234425884--------310023688743221121002
Q gi|254780489|r   49 EKHETLTDIAIQAGDIALRNA--------NIKKDSISLTLLA--------TSTPDHLLPPSSPLITHRLGL  103 (325)
Q Consensus        49 ~~~e~~~~la~~Aa~~aL~~a--------~~~~~dId~ii~~--------s~t~d~~~P~~a~~v~~~Lg~  103 (325)
                      +|+.--++|--+-++..+++.        -.+|+.+|-|+.-        .+.|....|..-.-|-+-+++
T Consensus        39 GpGtGKStlmK~ig~~~~~~GydVE~~hcssD~~SlDGvvip~lk~aivDGTaPHvvdP~~PGaveeiInL  109 (368)
T PRK06851         39 GPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGVIIPELKIAILDGTAPHVVDPKAPGAVEEIINL  109 (368)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCEEEEEEH
T ss_conf             99977899999999999968983799975899886435997578779974888766589999843479777


No 316
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=33.47  E-value=18  Score=16.44  Aligned_cols=30  Identities=7%  Similarity=-0.030  Sum_probs=14.4

Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             02185409330005999999999806789998
Q gi|254780489|r  276 VNSLKDFGNSSSASIPLSLSLENQRKPFQKGE  307 (325)
Q Consensus       276 ~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd  307 (325)
                      -.+..++|+--+|.-..  +..+++...+|++
T Consensus       346 ~~~~~~~~~p~aa~~I~--~~il~~~~~~~~~  375 (388)
T PRK13609        346 KEAMKSIYLPEPADHIV--DTILAENHVEPNH  375 (388)
T ss_pred             HHHHHHCCCCCHHHHHH--HHHHHHHCCCCCC
T ss_conf             99998627985899999--9999863579764


No 317
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=33.29  E-value=34  Score=14.61  Aligned_cols=27  Identities=11%  Similarity=0.046  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             999999999986430132223442588
Q gi|254780489|r   55 TDIAIQAGDIALRNANIKKDSISLTLL   81 (325)
Q Consensus        55 ~~la~~Aa~~aL~~a~~~~~dId~ii~   81 (325)
                      .+--.++.+++|+++|+++++|+.|-.
T Consensus        16 ~e~I~~ai~~~l~~~~l~~~~I~~iaS   42 (126)
T PRK07027         16 AEQIEAAIRAALAQLPLASAEVRVVAT   42 (126)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHEEE
T ss_conf             999999999999986999788111474


No 318
>PRK00768 nadE NAD synthetase; Reviewed
Probab=32.95  E-value=34  Score=14.58  Aligned_cols=32  Identities=16%  Similarity=0.282  Sum_probs=16.4

Q ss_pred             CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             388505886201224444622244343254420011
Q gi|254780489|r  131 SHQKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAV  166 (325)
Q Consensus       131 ~g~~~vLVv~~e~~S~~~d~~d~~~~~lfGDgA~A~  166 (325)
                      ++....||++....|-.+    ..=.+.||||++.+
T Consensus       150 An~~g~LVlGTgNksE~~----vGYfTkYGDg~~Di  181 (274)
T PRK00768        150 AGARGGLVVGTDHAAEAI----TGFFTKFGDGGADL  181 (274)
T ss_pred             HHCCCCEEECCCCHHHHH----CCCEEEECCCCCCH
T ss_conf             827899886488640444----08501026775173


No 319
>pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
Probab=32.53  E-value=35  Score=14.53  Aligned_cols=106  Identities=14%  Similarity=0.114  Sum_probs=53.5

Q ss_pred             CHHHHHHHHCCCHHHEEECCCCCEE-----EEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE-EECCCCCCCC
Q ss_conf             8889998809997683111475088-----994898879999999999986430132223442588431-0023688743
Q gi|254780489|r   21 HNSIIERHLNLKLGVIEQKTGIKYR-----YWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLATS-TPDHLLPPSS   94 (325)
Q Consensus        21 ~n~~l~~~~~~~~~~i~~~tGI~~R-----~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~-t~d~~~P~~a   94 (325)
                      +.+.+..+++.+.++.....| +++     +|.+++++..+--..-.+..++++++.|.+=  |+=..| .+     +.+
T Consensus         6 ~~~nI~~HYDl~ndFy~~~Ld-~~m~YSca~f~~~~~tLe~AQ~~Kl~~i~~~l~l~~g~~--vLDiGCGWG-----~~a   77 (273)
T pfam02353         6 DAENIQAHYDLSNDFFALFLD-PTMTYSCAYFERPDMTLEEAQQAKLDLILDKLGLKPGMT--LLDIGCGWG-----GLM   77 (273)
T ss_pred             HHHHHHHHCCCCHHHHHHHCC-CCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCE--EEEECCCCH-----HHH
T ss_conf             999999975898899998769-699886557179999999999999999998658899998--999788808-----999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-C-CCEEEEEEE
Q ss_conf             2211210023863334210123101256765788743-8-850588620
Q gi|254780489|r   95 PLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINS-H-QKPVLIIAA  141 (325)
Q Consensus        95 ~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~-g-~~~vLVv~~  141 (325)
                      ..++++.|. ++....++..      -.+.|...++. | .+++-|...
T Consensus        78 ~~~a~~~g~-~v~giTlS~~------Q~~~~~~r~~~~gl~~~v~v~~~  119 (273)
T pfam02353        78 RRAAERYDV-NVVGLTLSKN------QYKLARQRVAAEGLQRKVEVLLQ  119 (273)
T ss_pred             HHHHHHCCC-EEEEEECCHH------HHHHHHHHHHHCCCCCCCCEEEC
T ss_conf             999984795-1899979789------99999999987087432120006


No 320
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=32.42  E-value=35  Score=14.52  Aligned_cols=33  Identities=18%  Similarity=0.293  Sum_probs=23.9

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECC
Q ss_conf             88799999999999864301322234425884310023
Q gi|254780489|r   51 HETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDH   88 (325)
Q Consensus        51 ~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~   88 (325)
                      ++...+.-.++.++.+     +|++||+||.+++-||+
T Consensus        53 ~~~f~~~~l~~l~~~i-----d~k~iDYIi~~H~ePDh   85 (388)
T COG0426          53 GEKFFDEYLENLSKYI-----DPKEIDYIIVNHTEPDH   85 (388)
T ss_pred             CCCHHHHHHHHHHHHC-----CHHCCEEEEECCCCCCH
T ss_conf             8016999999998634-----80017199978889633


No 321
>TIGR00761 argB acetylglutamate kinase; InterPro: IPR004662   N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined .   The pathway from glutamate to arginine is:   NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) This entry describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts as well as some, as yet, uncharacterised proteins.; GO: 0003991 acetylglutamate kinase activity, 0006526 arginine biosynthetic process, 0005737 cytoplasm.
Probab=32.01  E-value=34  Score=14.59  Aligned_cols=63  Identities=13%  Similarity=0.096  Sum_probs=26.1

Q ss_pred             HHHHHHCC-----CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf             99864301-----322234425884310023688743221121002386333421012310125676578874388505
Q gi|254780489|r   63 DIALRNAN-----IKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSHQKPV  136 (325)
Q Consensus        63 ~~aL~~a~-----~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g~~~v  136 (325)
                      =..|+|.|     ++..|=+++.---=+. ++.+...-.++.++|..+... .++.         ++...+++.|+-+|
T Consensus        91 V~~l~~~g~~A~GL~g~Dg~L~~a~rk~~-~~~~~~~~vv~~~~G~VG~~~-~Vn~---------~~~~~Ll~~G~~PV  158 (254)
T TIGR00761        91 VALLNKHGINAIGLTGLDGQLFTADRKTA-SLDKEVIKVVAIDLGYVGEIK-KVNK---------ALLEALLKAGIIPV  158 (254)
T ss_pred             HHHHHHCCCCEEEECCCCCCEEEEEEEEE-EEEECCCEEEEEECCCEEEEC-CCCH---------HHHHHHHHCCCCCE
T ss_conf             99999679928631135773579998789-885157689999748412313-2788---------99999996498517


No 322
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=31.77  E-value=36  Score=14.45  Aligned_cols=53  Identities=19%  Similarity=0.270  Sum_probs=31.1

Q ss_pred             HHHHHHCCCCCCCCEEEECCCCCHHHHHH---HHHCCCCHHHHHHHHHHC-----CCCCCCHH
Q ss_conf             88997401200122463056541389999---997197865700218540-----93300059
Q gi|254780489|r  236 QSLRKSDLQPQDINRFIPHQANSRIIQKV---CEKIGLSKRIMVNSLKDF-----GNSSSASI  290 (325)
Q Consensus       236 ~~l~~~gl~~~did~~i~Hq~~~~~~~~~---~~~lgi~~~~~~~~l~~~-----GN~~sAsi  290 (325)
                      +.+.+.....++-..+++  +-..|++++   .+.+|+|.++++..++++     |-++++.+
T Consensus       179 ~~l~~~~~~~~~~~vy~C--GP~pMm~av~~~l~~~GVp~e~I~vSle~~M~CG~G~C~~C~v  239 (253)
T cd06221         179 DLLPELTLDPDNTVAIVC--GPPIMMRFVAKELLKLGVPEEQIWVSLERRMKCGVGKCGHCQI  239 (253)
T ss_pred             HHHHHHCCCCCCCEEEEE--CCHHHHHHHHHHHHHCCCCHHEEEEECCCCCCCCCEECCCCCC
T ss_conf             999873778688599993--9999999999999984998000799315536683605487246


No 323
>pfam01902 ATP_bind_4 ATP-binding region. This family of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.In some members of this family, this domain is associated with pfam01042.
Probab=31.74  E-value=34  Score=14.58  Aligned_cols=113  Identities=9%  Similarity=0.007  Sum_probs=52.0

Q ss_pred             EEEEEEEECCCCCCCHHHHHHHHCCCHHH---EEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf             99999973588613888999880999768---311147508899489887999999999998643013222344258843
Q gi|254780489|r    7 CILGFGHAVPNQCIHNSIIERHLNLKLGV---IEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLAT   83 (325)
Q Consensus         7 ~I~g~g~~lP~~~i~n~~l~~~~~~~~~~---i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s   83 (325)
                      .|..+-+..|++.-+-  +  ..+.+.+.   ..+..||.-.....+++.  +--+++.++++++-     +|+.++++-
T Consensus        25 ~v~~L~t~~~~~~ds~--~--~H~~~~~l~~~qA~algiPl~~~~~~~~~--e~~~~~L~~~l~~~-----~i~~vv~Gd   93 (219)
T pfam01902        25 EVPYLVSMKSENKESY--M--FHEPNLHLTKLLAEALGIPIIKLYTKGEE--EKEVEDLAGFLESL-----DVDALVAGA   93 (219)
T ss_pred             CCEEEEEEEECCCCCC--C--CCCCCHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHHHHHHHHC-----CCCEEEECC
T ss_conf             8379999963799810--2--61578899999999759968999679861--79999999999875-----986999986


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             10023688743221121002386-333421012310125676578874388505886
Q gi|254780489|r   84 STPDHLLPPSSPLITHRLGLMQS-GAIDLTGACAGFLYALVMADSYINSHQKPVLII  139 (325)
Q Consensus        84 ~t~d~~~P~~a~~v~~~Lg~~~~-~~~di~~~C~g~l~aL~~A~~~i~~g~~~vLVv  139 (325)
                      ..-+++- .---.+++++|+... +-..        ..--+++..++..|-+.++|.
T Consensus        94 I~s~~qr-~~~e~~c~~lgl~~~~PLW~--------~d~~~ll~e~i~~Gf~aiIv~  141 (219)
T pfam01902        94 IYSEYQK-SRIESVCRELGLKPFAPLWG--------RDPRKLAEEIVREGFEVAIVA  141 (219)
T ss_pred             CCCHHHH-HHHHHHHHHCCCEEEECCCC--------CCHHHHHHHHHHCCCEEEEEE
T ss_conf             0368899-99999999729889710348--------999999999998799499999


No 324
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=31.40  E-value=23  Score=15.75  Aligned_cols=18  Identities=17%  Similarity=0.237  Sum_probs=9.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHH
Q ss_conf             33421012310125676578
Q gi|254780489|r  108 AIDLTGACAGFLYALVMADS  127 (325)
Q Consensus       108 ~~di~~~C~g~l~aL~~A~~  127 (325)
                      .+|+  ||.++..++..|..
T Consensus        77 VLDL--GcG~G~d~~~aA~~   94 (258)
T PRK11873         77 VLDL--GSGAGFDCFLAARR   94 (258)
T ss_pred             EEEE--CCCCCHHHHHHHHH
T ss_conf             9994--78877759999998


No 325
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=30.65  E-value=37  Score=14.33  Aligned_cols=98  Identities=16%  Similarity=0.215  Sum_probs=47.4

Q ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH--CCCCCCCCEEEECCCCCHHHHHHHHH------CCCC----HHHHHHH
Q ss_conf             5523224514543432010036789889974--01200122463056541389999997------1978----6570021
Q gi|254780489|r  211 DFYMRITNGADIFYNAVKIMAQSAKQSLRKS--DLQPQDINRFIPHQANSRIIQKVCEK------IGLS----KRIMVNS  278 (325)
Q Consensus       211 ~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~--gl~~~did~~i~Hq~~~~~~~~~~~~------lgi~----~~~~~~~  278 (325)
                      ..|...|||..|...+.  -|.++ +.+++.  .+.. |+ |+..-.+. ++++.+++.      +...    .+|+..-
T Consensus        28 ~iH~DVMDGHFVPNlT~--Gp~v~-~~~r~~g~~~P~-DV-HLMv~~pd-~~~~~Fa~aGA~~I~vH~Ea~~h~~R~l~~  101 (216)
T TIGR01163        28 LIHVDVMDGHFVPNLTF--GPPVL-EALRKYGTKLPI-DV-HLMVENPD-RYIEDFAEAGADIITVHAEATEHIHRLLQL  101 (216)
T ss_pred             EEEEEECCCCCCCCCCC--CHHHH-HHHHHHCCCCCE-EE-EECCCCHH-HHHHHHHHHCCCEEEEECCCCCCHHHHHHH
T ss_conf             89986247971771002--77899-988740795212-66-30357857-778899970899899843776267999999


Q ss_pred             HHHCCCCC-----CCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf             85409330-----005999999999806789998999998615510
Q gi|254780489|r  279 LKDFGNSS-----SASIPLSLSLENQRKPFQKGEKILTISCRRGND  319 (325)
Q Consensus       279 l~~~GN~~-----sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s  319 (325)
                      .+++|-..     .+++.-.|.+.++.     =|.||++|+-|||+
T Consensus       102 Ik~~G~~AG~v~NP~TPl~~~~~~L~~-----~D~VLlMSVnPGFg  142 (216)
T TIGR01163       102 IKELGAKAGIVLNPATPLEALEYVLED-----VDLVLLMSVNPGFG  142 (216)
T ss_pred             HHHCCCCEEEEECCCCCHHHHHHHHHH-----CCEEEEEEEECCCC
T ss_conf             997189706886799998789989876-----29899887607998


No 326
>pfam12244 DUF3606 Protein of unknown function (DUF3606). This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=30.61  E-value=37  Score=14.33  Aligned_cols=44  Identities=20%  Similarity=0.366  Sum_probs=31.4

Q ss_pred             CCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
Q ss_conf             0120012246305654138999999719786570021854093300
Q gi|254780489|r  242 DLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSS  287 (325)
Q Consensus       242 gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l~~~GN~~s  287 (325)
                      ...+.|-+++-+++  ..-.+.|+++||+++++.-.-+...||...
T Consensus         6 k~~~~Dr~~I~~~e--~~ev~yW~~~~gvt~~~L~~AV~~vG~~~~   49 (57)
T pfam12244         6 KRGPQDRSRINLNE--EYEVKYWAKRLGVSEEQLKAAVRKVGNSAK   49 (57)
T ss_pred             CCCCCCHHHCCCCC--HHHHHHHHHHHCCCHHHHHHHHHHHCCCHH
T ss_conf             05887423067675--899999999979499999999999885699


No 327
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=30.14  E-value=38  Score=14.28  Aligned_cols=46  Identities=13%  Similarity=0.096  Sum_probs=31.3

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf             99999971978657002185409330005999999999806789998999998615
Q gi|254780489|r  261 IQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRR  316 (325)
Q Consensus       261 ~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~  316 (325)
                      ++.+++.-||..|.++          ++--+..|-+++++|.+.+|++|+++=.|.
T Consensus       279 i~~~a~~eGI~LDPVY----------TgKa~~GL~~~i~~g~~~~g~~VlfiHTGG  324 (337)
T PRK12390        279 IRLCARLEGMLTDPVY----------EGKSMHGMIDLVRKGEFPEGSKVLYAHLGG  324 (337)
T ss_pred             HHHHHHHHCCCCCCHH----------HHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf             9999997495236237----------899999999999769989999089998987


No 328
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily   of proteins is predicted to  bind ATP. This domainhas  a strongly conserved motif SGGKD at the N terminus.
Probab=30.10  E-value=38  Score=14.27  Aligned_cols=66  Identities=15%  Similarity=0.149  Sum_probs=32.9

Q ss_pred             HHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             99986430132223442588431002368874322112100238-633342101231012567657887438850588
Q gi|254780489|r   62 GDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQ-SGAIDLTGACAGFLYALVMADSYINSHQKPVLI  138 (325)
Q Consensus        62 a~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~-~~~~di~~~C~g~l~aL~~A~~~i~~g~~~vLV  138 (325)
                      .+++|.+.  ....|+.++++-..-+++- .---.+++++|+.. .+-...        .--++...++..|.+.++|
T Consensus        77 l~~~L~~~--k~~gi~~vv~GdI~s~~qr-~~~e~~c~~lgl~~~~PLW~~--------~~~~ll~e~i~~Gf~aiiv  143 (194)
T cd01994          77 LKELLRKL--KEEGVDAVVFGAILSEYQR-TRVERVCERLGLEPLAPLWGR--------DQEELLREMIEAGFKAIII  143 (194)
T ss_pred             HHHHHHHH--HHCCCCEEEECCCCCHHHH-HHHHHHHHHCCCEEECHHCCC--------CHHHHHHHHHHCCCEEEEE
T ss_conf             99999999--9759959999963328899-999999997398887001079--------9999999999879909999


No 329
>pfam09103 BRCA-2_OB1 BRCA2, oligonucleotide/oligosaccharide-binding, domain 1. Members of this family assume an OB fold, which consists of a highly curved five-stranded beta-sheet that closes on itself to form a beta-barrel. OB1 has a shallow groove formed by one face of the curved sheet and is demarcated by two loops, one between beta 1 and beta 2 and another between beta 4 and beta 5, which allows for weak single strand DNA binding. The domain also binds the 70-amino acid DSS1 (deleted in split-hand/split foot syndrome) protein, which was originally identified as one of three genes that map to a 1.5-Mb locus deleted in an inherited developmental malformation syndrome.
Probab=29.86  E-value=39  Score=14.25  Aligned_cols=71  Identities=15%  Similarity=0.168  Sum_probs=31.1

Q ss_pred             HHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHCCC----CE
Q ss_conf             99998643013222344258843100236887432211210023863334210123101256765-78874388----50
Q gi|254780489|r   61 AGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMA-DSYINSHQ----KP  135 (325)
Q Consensus        61 Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A-~~~i~~g~----~~  135 (325)
                      |.|+-+|+-  ++..--+|++.+.....-.   .        .+....+.++.|..+.-..++.. ..+++.|.    .+
T Consensus         2 alrkI~E~D--~~~~~~mVL~Vs~i~~~~~---~--------~~~~~~ielTDGWY~ika~lD~~L~~~l~~gkl~vGqK   68 (118)
T pfam09103         2 ALKKILEGD--DSAASPMVLLVSGISDEEE---D--------SNSNRIIELTDGWYSVKAQLDIPLTNLLRKGKLRVGQK   68 (118)
T ss_pred             HHHHHHCCC--CCCCCEEEEEEEEECCCCC---C--------CCCCEEEEEECCEEEEEECCCHHHHHHHHCCCCCCCCE
T ss_conf             547645068--8767648999987345677---7--------88501899954668873416989999998099535737


Q ss_pred             EEEEEECCC
Q ss_conf             588620122
Q gi|254780489|r  136 VLIIAANLL  144 (325)
Q Consensus       136 vLVv~~e~~  144 (325)
                      ..|.+++..
T Consensus        69 L~v~GA~L~   77 (118)
T pfam09103        69 LRVCGAKLI   77 (118)
T ss_pred             EEEECCEEE
T ss_conf             899885840


No 330
>PRK02628 nadE NAD synthetase; Reviewed
Probab=29.52  E-value=39  Score=14.21  Aligned_cols=51  Identities=16%  Similarity=0.282  Sum_probs=25.0

Q ss_pred             HHHHHHHCCCCCCCCEEEE-CCCCC----HHHHHHHHHCCCCHH-----HHH-HHHHHCCCC
Q ss_conf             9889974012001224630-56541----389999997197865-----700-218540933
Q gi|254780489|r  235 KQSLRKSDLQPQDINRFIP-HQANS----RIIQKVCEKIGLSKR-----IMV-NSLKDFGNS  285 (325)
Q Consensus       235 ~~~l~~~gl~~~did~~i~-Hq~~~----~~~~~~~~~lgi~~~-----~~~-~~l~~~GN~  285 (325)
                      ..+++..|+..++|--+.+ -+.+.    .--..+++.||+.-.     ..+ ..+...||.
T Consensus       383 a~A~d~Lg~~r~~V~~vtMPs~~TS~~S~~dA~~La~~LGi~~~~I~I~~a~~~~~~di~~~  444 (678)
T PRK02628        383 AKAFDRLGLPRKNILAYTMPGFGTTDRTKNNAVALMKALGVTAREIDIRPAALQMLKDIGHP  444 (678)
T ss_pred             HHHHHHHCCCHHCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCH
T ss_conf             99999848971224899778876578789999999997299779976299999999984442


No 331
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=29.10  E-value=40  Score=14.16  Aligned_cols=41  Identities=12%  Similarity=0.261  Sum_probs=21.5

Q ss_pred             HHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHH---HCCCCHHHHH
Q ss_conf             898899740120012246305654138999999---7197865700
Q gi|254780489|r  234 AKQSLRKSDLQPQDINRFIPHQANSRIIQKVCE---KIGLSKRIMV  276 (325)
Q Consensus       234 i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~---~lgi~~~~~~  276 (325)
                      +.+.+.+..+...+.+.+++  +...|++++.+   .+|+|+++++
T Consensus       288 v~~~~~~~~~~~~~~~vYlC--GPp~mv~a~~~~L~~~Gv~~~~I~  331 (340)
T PRK11872        288 IHEHFDKDQLREQAFDMYLC--GPPPMVEAVKQWLDEQALQNYRLY  331 (340)
T ss_pred             HHHHHHHHCCCCCCCEEEEE--CCHHHHHHHHHHHHHCCCCHHHEE
T ss_conf             88998853578889999990--999999999999998699889968


No 332
>TIGR02684 dnstrm_HI1420 probable addiction module antidote protein; InterPro: IPR014057   Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the downstream member of a gene pair. It is a predicted DNA-binding protein from a clade within the helix-turn-helix family IPR001387 from INTERPRO. These gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module..
Probab=29.04  E-value=20  Score=16.16  Aligned_cols=64  Identities=23%  Similarity=0.270  Sum_probs=49.5

Q ss_pred             CCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHH
Q ss_conf             1003678988997401200122463056541389999997197865700218540933000599
Q gi|254780489|r  228 KIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIP  291 (325)
Q Consensus       228 ~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~  291 (325)
                      +.|.....+++++.|=+|.-|.+-+-+=+-.|-+.++++.-|+..|..+.-|..=||=.=.+|.
T Consensus        15 E~~a~YL~~a~e~gGdDp~~~~~ALG~iArArGMtqlA~~tGlsREsLYkALs~~GnP~f~T~l   78 (91)
T TIGR02684        15 EEVAEYLAQALEDGGDDPALIAAALGVIARARGMTQLAKKTGLSRESLYKALSGGGNPTFDTIL   78 (91)
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHH
T ss_conf             8999999999743699988999998899865165789998287678878873568895668889


No 333
>PRK09483 response regulator; Provisional
Probab=28.59  E-value=39  Score=14.23  Aligned_cols=95  Identities=9%  Similarity=0.040  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-CE
Q ss_conf             99999999864301322234425884310023688743221121002386333421012310125676578874388-50
Q gi|254780489|r   57 IAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSHQ-KP  135 (325)
Q Consensus        57 la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g~-~~  135 (325)
                      +--++.+..|++.    .+++.+-.+++..+.+      ..... .-++..-.|++..   ...+++.+..+.+..+ -+
T Consensus        12 l~r~gl~~~L~~~----~~~~vv~~a~~~~~~l------~~~~~-~~pDvvllDl~lp---~~~Gl~~~~~i~~~~p~~~   77 (216)
T PRK09483         12 LVRAGIRRILEDI----KGIKVVGEASCGEDAV------KWCRT-NAVDVVLMDMNMP---GIGGLEATRKILRSTPDVK   77 (216)
T ss_pred             HHHHHHHHHHHHC----CCCEEEEEECCHHHHH------HHHHH-CCCCEEEECCCCC---CCCCHHHHHHHHHHCCCCC
T ss_conf             9999999999748----9958999989999999------99985-5999999868898---9875237788874089985


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf             5886201224444622244343254420011220576
Q gi|254780489|r  136 VLIIAANLLSRRINLEDKDTAIIFGDAAGAVVLAPSP  172 (325)
Q Consensus       136 vLVv~~e~~S~~~d~~d~~~~~lfGDgA~A~il~~~~  172 (325)
                      ++|+++..-     ...  ..-.+..||.++|.-..+
T Consensus        78 vivls~~~~-----~~~--~~~al~~Ga~gyl~K~~~  107 (216)
T PRK09483         78 IIMLTVHTE-----NPL--PAKVMQAGAAGYLSKGAA  107 (216)
T ss_pred             EEEECCCCC-----HHH--HHHHHHCCCCEEEECCCC
T ss_conf             786305663-----288--999997488789947999


No 334
>PRK03202 6-phosphofructokinase; Provisional
Probab=27.69  E-value=34  Score=14.58  Aligned_cols=72  Identities=19%  Similarity=0.278  Sum_probs=35.5

Q ss_pred             CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-----CCCCCCCC--CCCCCCHHHHHHHHHHHHC-----C-CCEEE
Q ss_conf             3222344258843100236887432211210023-----86333421--0123101256765788743-----8-85058
Q gi|254780489|r   71 IKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-----QSGAIDLT--GACAGFLYALVMADSYINS-----H-QKPVL  137 (325)
Q Consensus        71 ~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-----~~~~~di~--~~C~g~l~aL~~A~~~i~~-----g-~~~vL  137 (325)
                      +...+||.|++..--.  .+ ..|..++++++++     ..--=|+.  .-|-||-+|++.+...+..     . .+++.
T Consensus        90 l~~~~Id~Li~IGGdg--S~-~~a~~L~~~~~i~vigIPkTIDNDl~~tD~t~Gf~TA~~~~~~aid~i~~ta~s~~rv~  166 (323)
T PRK03202         90 LKKHGIDALVVIGGDG--SY-DGAKKLSEEYGIPCIGIPKTIDNDLAGTDYTIGFDTALNTVVEAIDKLRDTASSHERVF  166 (323)
T ss_pred             HHHCCCCEEEEECCCH--HH-HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             9982999999937946--99-99999984379748972144468987776788889999999999866577650668779


Q ss_pred             EEEECCCCCC
Q ss_conf             8620122444
Q gi|254780489|r  138 IIAANLLSRR  147 (325)
Q Consensus       138 Vv~~e~~S~~  147 (325)
                      ||  |+|-+.
T Consensus       167 iv--EvMGR~  174 (323)
T PRK03202        167 IV--EVMGRH  174 (323)
T ss_pred             EE--EECCCC
T ss_conf             99--935866


No 335
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=27.48  E-value=42  Score=13.98  Aligned_cols=14  Identities=29%  Similarity=0.100  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHCC
Q ss_conf             99999999864301
Q gi|254780489|r   57 IAIQAGDIALRNAN   70 (325)
Q Consensus        57 la~~Aa~~aL~~a~   70 (325)
                      -|+++|-+.=++.+
T Consensus        40 ~AlE~AlrlkE~~g   53 (256)
T PRK03359         40 NAIEAACQLKQQAA   53 (256)
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             99999999888519


No 336
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.46  E-value=42  Score=13.98  Aligned_cols=62  Identities=8%  Similarity=0.081  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             99999999998643013222344258843100236887432211210023863334210123101256
Q gi|254780489|r   55 TDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYAL  122 (325)
Q Consensus        55 ~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL  122 (325)
                      +.=-....+++|++..+.++|.|++|+-.--+-.+      ..++.+...+++.+.|+.|-.||++-+
T Consensus        13 s~~~~~~l~~~~~~~~~~~d~~DlviviGGDGT~L------~a~~~~~~~~iPilGIN~G~lGFLt~~   74 (259)
T PRK00561         13 TEPVLPKLKKVLKKKLAVEDGADYLFVLGGDGFFV------STAANYNCAGCKVVGINTGHLGFYTSF   74 (259)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHH------HHHHHHCCCCCCEEEEECCCCEEEECC
T ss_conf             79999999999854786788999999989719999------999985547996899966973364158


No 337
>PRK02947 hypothetical protein; Provisional
Probab=27.40  E-value=21  Score=16.04  Aligned_cols=14  Identities=29%  Similarity=0.594  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHCCCC
Q ss_conf             367898899740120
Q gi|254780489|r  231 AQSAKQSLRKSDLQP  245 (325)
Q Consensus       231 ~~~i~~~l~~~gl~~  245 (325)
                      .++++. |.+.|+.|
T Consensus       204 ~e~~~~-L~~~G~~p  217 (247)
T PRK02947        204 AEAAEE-LVERGIDP  217 (247)
T ss_pred             HHHHHH-HHHCCCCC
T ss_conf             999999-99779999


No 338
>PRK05826 pyruvate kinase; Provisional
Probab=27.39  E-value=43  Score=13.97  Aligned_cols=25  Identities=16%  Similarity=0.207  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf             5999999999806789998999998
Q gi|254780489|r  289 SIPLSLSLENQRKPFQKGEKILTIS  313 (325)
Q Consensus       289 si~~~L~~~~~~g~i~~Gd~vll~~  313 (325)
                      .+-.++..+.+.|.+++||+|++++
T Consensus       432 ~~~~a~~~~~~~g~~~~GD~vVvv~  456 (461)
T PRK05826        432 AAEEALRLLLERGLVESGDLVVLTQ  456 (461)
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf             9999999999879989989899992


No 339
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=27.24  E-value=43  Score=13.95  Aligned_cols=10  Identities=20%  Similarity=0.325  Sum_probs=4.5

Q ss_pred             CCCCEEEEEE
Q ss_conf             2344258843
Q gi|254780489|r   74 DSISLTLLAT   83 (325)
Q Consensus        74 ~dId~ii~~s   83 (325)
                      ..||-++.+.
T Consensus        44 ~~i~~Ivvv~   53 (238)
T PRK13385         44 SEFNEIIIAT   53 (238)
T ss_pred             CCCCEEEEEC
T ss_conf             7678799967


No 340
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family; InterPro: IPR003500   This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).    Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism . Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit.   Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology .; GO: 0005975 carbohydrate metabolic process.
Probab=27.20  E-value=43  Score=13.95  Aligned_cols=64  Identities=8%  Similarity=0.076  Sum_probs=28.2

Q ss_pred             HHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             9999864301322234425884310023688743221121002386333421012310125676578874
Q gi|254780489|r   61 AGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYIN  130 (325)
Q Consensus        61 Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~  130 (325)
                      -+.+-|++-++.+=|++..-+.   ...-+|.-|..|+.+.--.. ..+.|- =|.++ .++++|++.++
T Consensus        15 ~I~~hL~~~~~~~iD~G~~~~~---~~~DYPdYA~~Va~~v~~~~-~~~GIL-ICGTG-iG~siaANK~~   78 (146)
T TIGR00689        15 KIIEHLEQKGLEVIDLGTLEYD---ESVDYPDYAKLVAQKVVEGE-ASLGIL-ICGTG-IGMSIAANKVK   78 (146)
T ss_pred             HHHHHHHHCCCCEEEECCCCCC---CCCCCHHHHHHHHHHHHCCC-CCCCEE-EECCC-CCEEECCCCCC
T ss_conf             9999874368415750676788---99887478999999986288-873247-73687-51211013523


No 341
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=27.06  E-value=43  Score=13.93  Aligned_cols=105  Identities=15%  Similarity=0.122  Sum_probs=50.9

Q ss_pred             CCHHHHHHHHCCCHHHEEE---CCCCC-EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE-EECCCCCCCC
Q ss_conf             3888999880999768311---14750-88994898879999999999986430132223442588431-0023688743
Q gi|254780489|r   20 IHNSIIERHLNLKLGVIEQ---KTGIK-YRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLATS-TPDHLLPPSS   94 (325)
Q Consensus        20 i~n~~l~~~~~~~~~~i~~---~tGI~-~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~-t~d~~~P~~a   94 (325)
                      -+++.+..+++.+.+....   .+-.. .-+|-+++++..+=-..+.+..+++.++.|.+-  |+=-.| .+     +++
T Consensus        15 ~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~--lLDiGCGWG-----~l~   87 (283)
T COG2230          15 RAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMT--LLDIGCGWG-----GLA   87 (283)
T ss_pred             CHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCE--EEEECCCHH-----HHH
T ss_conf             1445206675065689998628987624577579988858999999999997569999998--987478844-----999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-C-CCEEEE
Q ss_conf             2211210023863334210123101256765788743-8-850588
Q gi|254780489|r   95 PLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINS-H-QKPVLI  138 (325)
Q Consensus        95 ~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~-g-~~~vLV  138 (325)
                      .+.+++.|. ++...+++      -+....+...++. | ..++=|
T Consensus        88 ~~aA~~y~v-~V~GvTlS------~~Q~~~~~~r~~~~gl~~~v~v  126 (283)
T COG2230          88 IYAAEEYGV-TVVGVTLS------EEQLAYAEKRIAARGLEDNVEV  126 (283)
T ss_pred             HHHHHHCCC-EEEEEECC------HHHHHHHHHHHHHCCCCCCCEE
T ss_conf             999998499-79996689------9999999999997599766079


No 342
>TIGR01258 pgm_1 phosphoglycerate mutase 1 family; InterPro: IPR005952    Most members of this family are phosphoglycerate mutase (5.4.2.1 from EC). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate.  2-phospho-D-glycerate + 2,3-diphosphoglycerate = 3-phospho-D-glycerate + 2,3-diphosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (5.4.2.4 from EC). ; GO: 0016868 intramolecular transferase activity phosphotransferases, 0006096 glycolysis.
Probab=26.99  E-value=32  Score=14.81  Aligned_cols=175  Identities=15%  Similarity=0.204  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             9999999864301322234425884310023688743221121002---3863334210123101256765788743885
Q gi|254780489|r   58 AIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGL---MQSGAIDLTGACAGFLYALVMADSYINSHQK  134 (325)
Q Consensus        58 a~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~---~~~~~~di~~~C~g~l~aL~~A~~~i~~g~~  134 (325)
                      |.+|+ ++|.+.|+.++    |.|.|... +.. .|...|-++|.=   +=..+.=+|-==.|.|+||+=+...-+=|..
T Consensus        35 A~~AG-~lLke~g~~FD----~ayTS~Lk-RAI-~Tl~~~L~~ldq~WlPV~ksWRLNERHYGaLQGLnK~ETa~KYGee  107 (248)
T TIGR01258        35 AKRAG-KLLKEEGYEFD----IAYTSLLK-RAI-HTLNIVLDELDQLWLPVKKSWRLNERHYGALQGLNKAETAAKYGEE  107 (248)
T ss_pred             HHHHH-HHHHHCCCCCC----EEEHHHHH-HHH-HHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHH
T ss_conf             99999-99996599876----21101267-899-9999999985880113102242334403313798879999760601


Q ss_pred             EEEEE--EECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             05886--2012244446222443432544200112205765444531135532136776527830698667654455655
Q gi|254780489|r  135 PVLII--AANLLSRRINLEDKDTAIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDF  212 (325)
Q Consensus       135 ~vLVv--~~e~~S~~~d~~d~~~~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (325)
                      .|.+=  +=|+.-.-+|..|+..                          ..+..|.+|.....-                
T Consensus       108 QV~~WRRSfDv~PPpld~~d~~~--------------------------psi~~D~RYa~~~~~----------------  145 (248)
T TIGR01258       108 QVKIWRRSFDVPPPPLDEKDPRS--------------------------PSIGKDPRYAGLDPK----------------  145 (248)
T ss_pred             HEEEEECCCCCCCCCCCCCCCCC--------------------------CCCCCCCCCCCCCCC----------------
T ss_conf             03012213578517898887767--------------------------655678310057743----------------


Q ss_pred             CCCCCCC-HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHC-CCCHHHHHH-HHHHCCCCCCCH
Q ss_conf             2322451-4543432010036789889974012001224630565413899999971-978657002-185409330005
Q gi|254780489|r  213 YMRITNG-ADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKI-GLSKRIMVN-SLKDFGNSSSAS  289 (325)
Q Consensus       213 ~~~~~~g-~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~l-gi~~~~~~~-~l~~~GN~~sAs  289 (325)
                      -+=.++. .++.+++++++.+.|..-|... -.   | .++-| +|  -++++.|-| +++.+.+.. |++       ..
T Consensus       146 ~lP~tEsLk~T~~RvlPYW~d~I~p~l~~G-K~---V-LI~AH-GN--SLRALvKhL~~~Sd~~Il~LNIP-------TG  210 (248)
T TIGR01258       146 VLPLTESLKDTVARVLPYWNDEIAPELKSG-KR---V-LIAAH-GN--SLRALVKHLEGISDEEILELNIP-------TG  210 (248)
T ss_pred             CCCCCCCHHHHHHHHCCCHHHEEHHHHHCC-CE---E-EEEEC-CH--HHHHHHHHHHCCCHHHHHHCCCC-------CC
T ss_conf             577555778899650653111101354468-97---9-99822-80--48999998612794688504598-------75


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780489|r  290 IPLSLSL  296 (325)
Q Consensus       290 i~~~L~~  296 (325)
                      ||+.++.
T Consensus       211 iPLvyeL  217 (248)
T TIGR01258       211 IPLVYEL  217 (248)
T ss_pred             CCHHHHC
T ss_conf             5334100


No 343
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=26.97  E-value=39  Score=14.19  Aligned_cols=46  Identities=22%  Similarity=0.347  Sum_probs=25.1

Q ss_pred             CHHHHHHHHHHHH--CCCCCCCCE-EEECCCCCH---HHHHHHHHCCCCHHH
Q ss_conf             0036789889974--012001224-630565413---899999971978657
Q gi|254780489|r  229 IMAQSAKQSLRKS--DLQPQDINR-FIPHQANSR---IIQKVCEKIGLSKRI  274 (325)
Q Consensus       229 ~~~~~i~~~l~~~--gl~~~did~-~i~Hq~~~~---~~~~~~~~lgi~~~~  274 (325)
                      .+.+.++++|+++  .+..+.++. ++.-=++.+   +.+.+.+.+|+|...
T Consensus       260 ~i~~~i~~~L~~~~~el~~Di~~~gIiLvGGsSriP~i~~~l~e~~g~~v~~  311 (336)
T PRK13930        260 QIVEAIKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHI  311 (336)
T ss_pred             HHHHHHHHHHHCCCHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             9999899887506723212112683999877455147999999997839888


No 344
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=26.88  E-value=43  Score=13.91  Aligned_cols=116  Identities=16%  Similarity=0.173  Sum_probs=53.7

Q ss_pred             EEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEE--ECCCCCCC--CCCCCCCCCCCC-CCCCC
Q ss_conf             31114750889948988799999999999864301322234425884310--02368874--322112100238-63334
Q gi|254780489|r   36 IEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLATST--PDHLLPPS--SPLITHRLGLMQ-SGAID  110 (325)
Q Consensus        36 i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t--~d~~~P~~--a~~v~~~Lg~~~-~~~~d  110 (325)
                      |.+..|.+-+.|.=-+.....+-.++..+.|+++  .+.||  ||...|+  |--..|+.  -..|++-+.-++ .+-||
T Consensus       136 If~~aGl~v~~Y~y~d~~t~~ldf~~~~~~L~~a--~~gsv--vlLh~ccHNPTG~D~t~eqW~~ia~~~~~k~l~p~~D  211 (397)
T PRK09257        136 IFEAAGLEVKTYPYYDAATKGLDFDGMLADLSQA--PAGDV--VLLHGCCHNPTGADLTPEQWDEVAELLKERGLIPFLD  211 (397)
T ss_pred             HHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHC--CCCCE--EEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             9997798057765564545762899999999828--99998--9972566798899989999999999999669868884


Q ss_pred             CCCCCCCCHHHHHH---HHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             21012310125676---5788743885058862012244446222443432544200112
Q gi|254780489|r  111 LTGACAGFLYALVM---ADSYINSHQKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAVV  167 (325)
Q Consensus       111 i~~~C~g~l~aL~~---A~~~i~~g~~~vLVv~~e~~S~~~d~~d~~~~~lfGDgA~A~i  167 (325)
                      +  +.-||-.+++.   +-+++......++|+-  -+|+.+        .++|+-.+|+.
T Consensus       212 ~--AYqGf~sGl~~Da~~iR~f~~~~~e~lva~--SfSKnf--------gLY~eRvG~l~  259 (397)
T PRK09257        212 I--AYQGFGDGLEEDAYGLRLFAAAGLELLVAS--SFSKNF--------GLYGERVGALS  259 (397)
T ss_pred             H--HCCCCCCCHHHHHHHHHHHHHHCCCEEEEE--ECCCCC--------CCCCCCCEEEE
T ss_conf             0--014334668999999999997288579984--037543--------33467750389


No 345
>cd01781 AF6_RA_repeat2 The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=26.85  E-value=39  Score=14.20  Aligned_cols=28  Identities=14%  Similarity=0.216  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf             0367898899740120012246305654
Q gi|254780489|r  230 MAQSAKQSLRKSDLQPQDINRFIPHQAN  257 (325)
Q Consensus       230 ~~~~i~~~l~~~gl~~~did~~i~Hq~~  257 (325)
                      ..++++++|++-|+..+|.+.|+..+.+
T Consensus        28 A~~vV~EaLekYgL~kedp~~YcLv~V~   55 (100)
T cd01781          28 ADRIVGEALEKYGLEKSDPDDYCLVEVS   55 (100)
T ss_pred             HHHHHHHHHHHHCCCCCCHHHEEEEEEE
T ss_conf             9999999999848895882026999974


No 346
>pfam07736 CM_1 Chorismate mutase type I. Chorismate mutase EC:5.4.99.5 catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine.
Probab=26.43  E-value=44  Score=13.86  Aligned_cols=45  Identities=20%  Similarity=0.347  Sum_probs=28.9

Q ss_pred             HHHHHHHHCCCCCCCCCEEEEEEEEEC--CCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf             999986430132223442588431002--36887432211210-02386333
Q gi|254780489|r   61 AGDIALRNANIKKDSISLTLLATSTPD--HLLPPSSPLITHRL-GLMQSGAI  109 (325)
Q Consensus        61 Aa~~aL~~a~~~~~dId~ii~~s~t~d--~~~P~~a~~v~~~L-g~~~~~~~  109 (325)
                      -.++.+++-+++++||-.+++ |+|+|  -.+|+.|+   +++ |..+++.+
T Consensus        25 Ll~~ii~~N~l~~~diiSv~F-T~T~DL~a~FPA~aa---R~~~G~~~Vplm   72 (118)
T pfam07736        25 LLDEIIERNGLDPEDIVSVIF-TVTPDLDAAFPAAAA---RELPGWKNVPLL   72 (118)
T ss_pred             HHHHHHHHCCCCHHHEEEEEE-EECCCCCCCCCHHHH---HHHCCCCCCCCC
T ss_conf             999999975999889789999-876643330859999---864699664701


No 347
>pfam02261 Asp_decarbox Aspartate decarboxylase. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesized initially as a proenzyme which is then proteolytically cleaved to an alpha (C-terminal) and beta (N-terminal) subunit and a pyruvoyl group. This family contains both chains of aspartate decarboxylase.
Probab=26.35  E-value=24  Score=15.60  Aligned_cols=10  Identities=30%  Similarity=0.338  Sum_probs=4.9

Q ss_pred             CEEEEEEECC
Q ss_conf             5058862012
Q gi|254780489|r  134 KPVLIIAANL  143 (325)
Q Consensus       134 ~~vLVv~~e~  143 (325)
                      .++.|+....
T Consensus        42 E~V~V~Nv~N   51 (116)
T pfam02261        42 EKVQIVNVNN   51 (116)
T ss_pred             CEEEEEECCC
T ss_conf             8899998989


No 348
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=26.13  E-value=38  Score=14.30  Aligned_cols=47  Identities=19%  Similarity=0.152  Sum_probs=28.2

Q ss_pred             HHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999998643013222344258843100236887432211210023863334
Q gi|254780489|r   60 QAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAID  110 (325)
Q Consensus        60 ~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~d  110 (325)
                      +-.++.|++.|++|++ +.|.||.+-. +.  +....|.+.||.+++.+||
T Consensus       209 eeL~ell~~~GItpDk-eIItYCqt~~-RS--s~TylVlklLGyp~VR~Yd  255 (610)
T PRK09629        209 QDMPEILRDLGITPDK-EVITHCQTHH-RS--GFTYLVAKALGYPRVKAYA  255 (610)
T ss_pred             HHHHHHHHHCCCCCCC-CEEEECCCCC-EE--HHHHHHHHHCCCCCCCCCC
T ss_conf             9999999975999899-8999899762-50--9999999975965021337


No 349
>COG4065 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.91  E-value=45  Score=13.80  Aligned_cols=42  Identities=17%  Similarity=0.269  Sum_probs=32.4

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCC-CCCEEEEEE-EEECCCCCC
Q ss_conf             887999999999998643013222-344258843-100236887
Q gi|254780489|r   51 HETLTDIAIQAGDIALRNANIKKD-SISLTLLAT-STPDHLLPP   92 (325)
Q Consensus        51 ~e~~~~la~~Aa~~aL~~a~~~~~-dId~ii~~s-~t~d~~~P~   92 (325)
                      .|+.++|-.....+.|++|+++.+ |++.++-.+ ++..+..|-
T Consensus        94 resVaelVk~tl~eslkkA~l~i~~Dl~FVVRSTGVtAGF~SPE  137 (480)
T COG4065          94 RESVAELVKDTLLESLKKASLDIDTDLHFVVRSTGVTAGFASPE  137 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHH
T ss_conf             88999999999999998647752355238996144014779979


No 350
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=25.76  E-value=24  Score=15.60  Aligned_cols=36  Identities=19%  Similarity=0.206  Sum_probs=13.7

Q ss_pred             CEEEEEEECCCCCC---CCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             50588620122444---4622244343254420011220
Q gi|254780489|r  134 KPVLIIAANLLSRR---INLEDKDTAIIFGDAAGAVVLA  169 (325)
Q Consensus       134 ~~vLVv~~e~~S~~---~d~~d~~~~~lfGDgA~A~il~  169 (325)
                      .++.|+.-..-.|+   .=+..+.+..+-=-||+|-+..
T Consensus        42 E~V~V~Nv~NG~Rf~TYvI~g~~GSg~I~lNGaAAr~~~   80 (126)
T PRK05449         42 EKVDIVNVNNGARFETYVIKGERGSGVICLNGAAARLVQ   80 (126)
T ss_pred             CEEEEEECCCCCEEEEEEEECCCCCCEEEECCHHHHCCC
T ss_conf             889999898995899999864798875875667872279


No 351
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706   Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.    Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , .    This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=25.69  E-value=34  Score=14.59  Aligned_cols=58  Identities=19%  Similarity=0.214  Sum_probs=37.9

Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC---CCCEEEEEEEC-CC
Q ss_conf             843100236887432211210023863334210123101256765788743---88505886201-22
Q gi|254780489|r   81 LATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINS---HQKPVLIIAAN-LL  144 (325)
Q Consensus        81 ~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~---g~~~vLVv~~e-~~  144 (325)
                      +++.|+ |.-|=+..+|-.+=. .+.+-+||.-.    ++.|+.|+.+++.   ..+.+|-||.= ..
T Consensus        14 FGHqtR-RWNPkMk~fIf~eRK-ngihIIDL~kT----~~~~~~Ay~~v~~~~~~gg~iLFVGTKNkQ   75 (227)
T TIGR01011        14 FGHQTR-RWNPKMKPFIFGERK-NGIHIIDLQKT----LQLLEEAYNFVREVVANGGKILFVGTKNKQ   75 (227)
T ss_pred             CCCEEC-CCCCCCCCCCCCCCC-CCCEEECHHHH----HHHHHHHHHHHHHHHHCCCEEEEEECHHHH
T ss_conf             375422-368889885532012-78512257899----999999999999999819958885165889


No 352
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria.  The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=25.58  E-value=46  Score=13.76  Aligned_cols=11  Identities=18%  Similarity=0.078  Sum_probs=6.7

Q ss_pred             EEEEEEECCCC
Q ss_conf             05886201224
Q gi|254780489|r  135 PVLIIAANLLS  145 (325)
Q Consensus       135 ~vLVv~~e~~S  145 (325)
                      .=||+|++..+
T Consensus       109 ~DLIl~G~~s~  119 (202)
T cd01714         109 VDLILTGKQSI  119 (202)
T ss_pred             CCEEEEEEECC
T ss_conf             98899954545


No 353
>PRK00782 hypothetical protein; Provisional
Probab=25.43  E-value=46  Score=13.74  Aligned_cols=63  Identities=6%  Similarity=0.178  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHC-----CCCCCCCEEEECCCCCHHHHHHHHH-CCCCHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             367898899740-----1200122463056541389999997-19786570021854093300059999
Q gi|254780489|r  231 AQSAKQSLRKSD-----LQPQDINRFIPHQANSRIIQKVCEK-IGLSKRIMVNSLKDFGNSSSASIPLS  293 (325)
Q Consensus       231 ~~~i~~~l~~~g-----l~~~did~~i~Hq~~~~~~~~~~~~-lgi~~~~~~~~l~~~GN~~sAsi~~~  293 (325)
                      .+.+...+++.+     +--.|+.|+-+++...+..+.+.++ +.++.+.++..+.+++||.+...|++
T Consensus       162 ~~~l~~~~~~~~~~~liV~SSD~sHy~~~~~a~~~D~~~i~~I~~lD~~~~~~~~~~~~~t~CG~~pi~  230 (272)
T PRK00782        162 GEAIAEAVSELGRDVVIIASSDFTHYELPERAKEKDMRIIDAILDLDVDGMYEEIYRMNHTACGYGPIA  230 (272)
T ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEECHHHHH
T ss_conf             999999998449987999957776888899999999999999981698999999985387488789999


No 354
>TIGR01136 cysKM cysteine synthases; InterPro: IPR005856    This model discriminates cysteine synthases (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded.    Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=25.37  E-value=39  Score=14.19  Aligned_cols=75  Identities=25%  Similarity=0.190  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEEEEE--EECCCCCCCCCCCCCCCCCC------CC---------CC----CCCCCCC
Q ss_conf             9999999986430132223442588431--00236887432211210023------86---------33----3421012
Q gi|254780489|r   57 IAIQAGDIALRNANIKKDSISLTLLATS--TPDHLLPPSSPLITHRLGLM------QS---------GA----IDLTGAC  115 (325)
Q Consensus        57 la~~Aa~~aL~~a~~~~~dId~ii~~s~--t~d~~~P~~a~~v~~~Lg~~------~~---------~~----~di~~~C  115 (325)
                      .|..=+.+|.++-.+.|.+.  ||=+|+  |+--+     ++|+...|.+      ..         .+    +=+..+=
T Consensus        45 ~A~~MI~~AE~~G~lk~G~~--iiEaTSGNTGIaL-----AMvAAarGYkliL~MPetmS~ERr~~l~ayGA~L~LT~~~  117 (315)
T TIGR01136        45 IALNMILDAEKRGLLKPGTT--IIEATSGNTGIAL-----AMVAAARGYKLILTMPETMSLERRKLLKAYGAELILTPAE  117 (315)
T ss_pred             HHHHHHHHHHHCCCCCCCCE--EEECCCCCHHHHH-----HHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf             88999999986588788888--9842778448999-----9999861991899858871789999998709669883733


Q ss_pred             CCCHHHHHHHHHHHHCCC-CEEEE
Q ss_conf             310125676578874388-50588
Q gi|254780489|r  116 AGFLYALVMADSYINSHQ-KPVLI  138 (325)
Q Consensus       116 ~g~l~aL~~A~~~i~~g~-~~vLV  138 (325)
                      -|+--|++.|..+.+.+. +++++
T Consensus       118 ~GM~GAi~kA~el~~~~p~~~~~l  141 (315)
T TIGR01136       118 EGMKGAIDKAEELAAETPNKYVML  141 (315)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEC
T ss_conf             575778999999998588962103


No 355
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=25.24  E-value=33  Score=14.68  Aligned_cols=10  Identities=20%  Similarity=0.255  Sum_probs=4.5

Q ss_pred             CCEEEEEECC
Q ss_conf             4200112205
Q gi|254780489|r  161 DAAGAVVLAP  170 (325)
Q Consensus       161 DgA~A~il~~  170 (325)
                      .||+|-+...
T Consensus        71 NGAAArl~~~   80 (126)
T COG0853          71 NGAAARLVQV   80 (126)
T ss_pred             CHHHHHHCCC
T ss_conf             6698852688


No 356
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=25.24  E-value=46  Score=13.72  Aligned_cols=25  Identities=4%  Similarity=0.053  Sum_probs=16.2

Q ss_pred             CCEEEEEEEEECCCCCCCHHHHHHHHC
Q ss_conf             620999999735886138889998809
Q gi|254780489|r    4 SSSCILGFGHAVPNQCIHNSIIERHLN   30 (325)
Q Consensus         4 ~~~~I~g~g~~lP~~~i~n~~l~~~~~   30 (325)
                      -...|.++..|.|...  -+++.+.+|
T Consensus         3 ~r~~i~~l~pY~~g~~--~~~~~~~~g   27 (366)
T PRK01533          3 VKDQLSSLQPYKPGKS--PEQMKEVYG   27 (366)
T ss_pred             CCHHHHCCCCCCCCCC--HHHHHHHHC
T ss_conf             4857508999999999--899998618


No 357
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase; InterPro: IPR010237   This family of proteins includes the SDT1/SSM1 gene from yeast, which has been shown to code for a pyrimidine (UMP/CMP) 5'nucleotidase. The family spans plants, fungi and bacteria. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily..
Probab=25.08  E-value=28  Score=15.16  Aligned_cols=30  Identities=10%  Similarity=0.039  Sum_probs=13.8

Q ss_pred             CCCHHHHHHHHHCC-CCHHHHHHHHHHCCCC
Q ss_conf             54138999999719-7865700218540933
Q gi|254780489|r  256 ANSRIIQKVCEKIG-LSKRIMVNSLKDFGNS  285 (325)
Q Consensus       256 ~~~~~~~~~~~~lg-i~~~~~~~~l~~~GN~  285 (325)
                      |+..+.+.+++..| ++++|.+..=+-..|+
T Consensus       162 P~~~ay~~~~~~~~~vd~~~~~f~DDS~rNi  192 (205)
T TIGR01993       162 PSPEAYEKALREAGVVDPERAIFFDDSARNI  192 (205)
T ss_pred             CCHHHHHHHHHHHCCCCCCCEEEECCCHHHH
T ss_conf             8889999999985588720017530468788


No 358
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=25.02  E-value=47  Score=13.69  Aligned_cols=20  Identities=10%  Similarity=0.154  Sum_probs=8.9

Q ss_pred             HHHHHHHCCCCCCC-CCEEEE
Q ss_conf             99986430132223-442588
Q gi|254780489|r   62 GDIALRNANIKKDS-ISLTLL   81 (325)
Q Consensus        62 a~~aL~~a~~~~~d-Id~ii~   81 (325)
                      ....|.+-++..++ ||.-+.
T Consensus        20 i~~fL~~~~l~~d~~ve~~v~   40 (352)
T COG3053          20 IAEFLHQNDLRVDTTVEYFVA   40 (352)
T ss_pred             HHHHHHHCCCEECCCCEEEEE
T ss_conf             999886347511365208999


No 359
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein; InterPro: IPR014169   Members in this entry represent the peptidoglycan-associated lipoprotein (Pal or OprL) protein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The entry represents only the conserved C-terminal domain..
Probab=24.70  E-value=48  Score=13.65  Aligned_cols=49  Identities=12%  Similarity=0.065  Sum_probs=34.5

Q ss_pred             CCCCHHHHH---HHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCC
Q ss_conf             988799999---9999998643013222344258843100236887432211
Q gi|254780489|r   50 KHETLTDIA---IQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLIT   98 (325)
Q Consensus        50 ~~e~~~~la---~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~   98 (325)
                      ..|.+.-|+   +.|+++.|...|+.++.|..|-|+-.=|-...-+-+||=+
T Consensus        45 TrEYNlALGeRRA~AV~~yL~~~GV~~~q~~~vSYGkErP~~~G~~E~~wak   96 (104)
T TIGR02802        45 TREYNLALGERRANAVKDYLQAKGVSASQIETVSYGKERPAALGHDEAAWAK   96 (104)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHH
T ss_conf             8777777889999999999997389611004630266568778988577754


No 360
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent  decarboxylase in beta-alanine production. Decarboxylation of aspartate is  the major route of beta-alanine production in bacteria, and is catalyzed  by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which  requires a pyruvoyl group for its activity. The pyruvoyl cofactor is  covalently bound to the enzyme. The protein is synthesized as a  proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an  alpha chain (C-terminal fragment) and beta chain (N-terminal fragment),  and the pyruvoyl group. Beta-alanine is required for the biosynthesis of  pantothenate, in which the enzyme plays a critical regulatory role. The  active site of the tetrameric enzyme is located at the interface of two  subunits, with a Lysine and a Histidine from the beta chain of one  subunit forming the active site with residues from the alpha chain of  the adjacent subunit. This alignment 
Probab=24.63  E-value=24  Score=15.54  Aligned_cols=10  Identities=30%  Similarity=0.494  Sum_probs=4.7

Q ss_pred             CEEEEEEECC
Q ss_conf             5058862012
Q gi|254780489|r  134 KPVLIIAANL  143 (325)
Q Consensus       134 ~~vLVv~~e~  143 (325)
                      .++.|+.-+.
T Consensus        41 E~V~V~N~~N   50 (111)
T cd06919          41 EKVLVVNVNN   50 (111)
T ss_pred             CEEEEEECCC
T ss_conf             8899998989


No 361
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=24.61  E-value=48  Score=13.64  Aligned_cols=16  Identities=6%  Similarity=-0.141  Sum_probs=8.1

Q ss_pred             HHHHHHHCCCHHHEEE
Q ss_conf             8999880999768311
Q gi|254780489|r   23 SIIERHLNLKLGVIEQ   38 (325)
Q Consensus        23 ~~l~~~~~~~~~~i~~   38 (325)
                      .+.++++|.+.+.|.+
T Consensus        11 ~~~a~~~G~~~~~iid   26 (358)
T PRK07392         11 AWAAAIAGCPPSAILD   26 (358)
T ss_pred             HHHHHHHCCCHHHCEE
T ss_conf             9999982979998466


No 362
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=24.45  E-value=48  Score=13.62  Aligned_cols=11  Identities=18%  Similarity=0.232  Sum_probs=5.9

Q ss_pred             CCEEEEEEECC
Q ss_conf             85058862012
Q gi|254780489|r  133 QKPVLIIAANL  143 (325)
Q Consensus       133 ~~~vLVv~~e~  143 (325)
                      ..++.+|++..
T Consensus        84 ~~~v~lvGaGn   94 (211)
T PRK05472         84 TTNVALVGAGN   94 (211)
T ss_pred             CCEEEEECCCH
T ss_conf             75089988877


No 363
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=24.40  E-value=48  Score=13.62  Aligned_cols=109  Identities=18%  Similarity=0.075  Sum_probs=50.7

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             87999999999998643013222344258843100236887432211210023863334210123101256765788743
Q gi|254780489|r   52 ETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINS  131 (325)
Q Consensus        52 e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~  131 (325)
                      |.+..=..+|+++|+.++|.+|++|+.....-..-+...  ...+.+.+..++-+.-+++   |+-...||+-+     .
T Consensus        45 e~A~~ni~~ai~~A~~~aG~~~~~i~~~~agla~ag~~~--~~~~~~~~~~l~~a~~v~v---~~Dg~iAl~ga-----~  114 (301)
T COG2971          45 EEAVRNIKDAIREALDEAGLKPDEIAAIVAGLALAGANV--EEAREELERLLPFAGKVDV---ENDGLIALRGA-----L  114 (301)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEEECCCCCH--HHHHHHHHHHCCCCCEEEE---ECCHHHHHHHC-----C
T ss_conf             789999999999998762899778170124550357662--6778889873686646999---55769998613-----2


Q ss_pred             CCCEEEEEEECCCCCCCCCCCC-CC-----CCCCCCCEEEEEECC
Q ss_conf             8850588620122444462224-43-----432544200112205
Q gi|254780489|r  132 HQKPVLIIAANLLSRRINLEDK-DT-----AIIFGDAAGAVVLAP  170 (325)
Q Consensus       132 g~~~vLVv~~e~~S~~~d~~d~-~~-----~~lfGDgA~A~il~~  170 (325)
                      +...-.|+.+-+-|-.+-..+. ..     .++.||=+++.-+++
T Consensus       115 ~~~~Gii~i~GTGSi~~~~~gg~~~r~GG~Gf~IgDegSga~ig~  159 (301)
T COG2971         115 GDDDGIIVIAGTGSIGYGRKGGRRERVGGWGFPIGDEGSGAWIGR  159 (301)
T ss_pred             CCCCCEEEEECCCEEEEEEECCEEEEECCCCCCCCCCCHHHHHHH
T ss_conf             799878999258769999708866775686751156520779999


No 364
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=24.31  E-value=48  Score=13.61  Aligned_cols=31  Identities=29%  Similarity=0.369  Sum_probs=16.7

Q ss_pred             CCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             2112100238-63334210123101256765788
Q gi|254780489|r   96 LITHRLGLMQ-SGAIDLTGACAGFLYALVMADSY  128 (325)
Q Consensus        96 ~v~~~Lg~~~-~~~~di~~~C~g~l~aL~~A~~~  128 (325)
                      .++++|++++ -..+||  ||.-+-.++..|..+
T Consensus       158 ~i~~kl~l~~G~~VLeI--GcGWGgla~~aA~~~  189 (383)
T PRK11705        158 LICRKLQLKPGMRVLDI--GCGWGGLARYAAEHY  189 (383)
T ss_pred             HHHHHCCCCCCCEEEEE--CCCHHHHHHHHHHHC
T ss_conf             99986489999979885--787499999999974


No 365
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078   This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=24.31  E-value=48  Score=13.61  Aligned_cols=70  Identities=10%  Similarity=0.209  Sum_probs=47.0

Q ss_pred             HHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC------CC-----CCCCCC--CCCC-CCHHHHHHHHHHH
Q ss_conf             98643013222344258843100236887432211210023------86-----333421--0123-1012567657887
Q gi|254780489|r   64 IALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM------QS-----GAIDLT--GACA-GFLYALVMADSYI  129 (325)
Q Consensus        64 ~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~------~~-----~~~di~--~~C~-g~l~aL~~A~~~i  129 (325)
                      +.|... .--.|||.|+..-+=+   . +.|..+|+-|+.+      +.     -...||  +|.+ .=.+.+.+|++-+
T Consensus       118 ~ila~~-F~d~~ID~V~TV~TKG---v-PLA~~~A~~LnV~lvivRkD~kvTEGStVSiNYVSGssG~~I~~M~LarrSL  192 (269)
T TIGR01743       118 KILASV-FIDKEIDAVMTVETKG---V-PLAYAVAKVLNVPLVIVRKDSKVTEGSTVSINYVSGSSGDRIQKMSLARRSL  192 (269)
T ss_pred             HHHHHH-CCCCCCCEEEEEECCC---H-HHHHHHHHHCCCCEEEEECCCCEECCCEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             887543-2685578789952188---2-3898998764961799984681210532899556768743678888888888


Q ss_pred             HCCCCEEEE
Q ss_conf             438850588
Q gi|254780489|r  130 NSHQKPVLI  138 (325)
Q Consensus       130 ~~g~~~vLV  138 (325)
                      +.|.|..+|
T Consensus       193 k~GS~vL~v  201 (269)
T TIGR01743       193 KKGSKVLIV  201 (269)
T ss_pred             HHCCEEEEE
T ss_conf             608908999


No 366
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=24.30  E-value=44  Score=13.87  Aligned_cols=37  Identities=19%  Similarity=0.124  Sum_probs=15.7

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             3899999971978657002185409330005999999
Q gi|254780489|r  259 RIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLS  295 (325)
Q Consensus       259 ~~~~~~~~~lgi~~~~~~~~l~~~GN~~sAsi~~~L~  295 (325)
                      .-++.+.+++||.+++.+..+.+-|+..++-.+..|.
T Consensus        65 ~~l~~~l~~~GI~~~~~VV~Y~~~~~~~a~r~~w~L~  101 (122)
T cd01448          65 EEFAELLGSLGISNDDTVVVYDDGGGFFAARAWWTLR  101 (122)
T ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf             9999999980988897599980898738999999999


No 367
>TIGR01428 HAD_type_II haloacid dehalogenase, type II; InterPro: IPR006328   These proteins catalyze the hydrolytic dehalogenation of small L-2-haloalkanoic acids to yield the corresponding D-2-hydroxyalkanoic acids . They belong to the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, class (subfamily) I. Note that the Type I HAD enzymes have not yet been fully characterised, but clearly utilise a substantially different catalytic mechanism and are thus unlikely to be related.; GO: 0019120 hydrolase activity acting on acid halide bonds in C-halide compounds, 0008152 metabolic process.
Probab=24.00  E-value=49  Score=13.57  Aligned_cols=19  Identities=16%  Similarity=0.146  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999999986430132
Q gi|254780489|r   54 LTDIAIQAGDIALRNANIK   72 (325)
Q Consensus        54 ~~~la~~Aa~~aL~~a~~~   72 (325)
                      -.++..+|.+.++++.++.
T Consensus        62 f~~~~~~al~~~~~~~~~~   80 (207)
T TIGR01428        62 FWDLTAEALRYLLGRLGLA   80 (207)
T ss_pred             HHHHHHHHHHHHHHHCCCC
T ss_conf             8999999999999755877


No 368
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=23.98  E-value=49  Score=13.57  Aligned_cols=27  Identities=15%  Similarity=0.268  Sum_probs=14.3

Q ss_pred             HCCCHHHHHHHHHHH-HCCCCCCCCEEE
Q ss_conf             201003678988997-401200122463
Q gi|254780489|r  226 AVKIMAQSAKQSLRK-SDLQPQDINRFI  252 (325)
Q Consensus       226 ~~~~~~~~i~~~l~~-~gl~~~did~~i  252 (325)
                      +++...++++..+.. ..++.++|+--+
T Consensus       182 av~lA~~aL~~~~~~~~~l~~~~ieiav  209 (211)
T cd03749         182 LIKHALRALRETLPGEQELTIKNVSIAI  209 (211)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf             9999999999985166764867359999


No 369
>pfam06723 MreB_Mbl MreB/Mbl protein. This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl.
Probab=23.96  E-value=45  Score=13.81  Aligned_cols=49  Identities=16%  Similarity=0.321  Sum_probs=27.7

Q ss_pred             CCHHHHHHHHHHHH--CCCCCCCCE-EEECCCCCH---HHHHHHHHCCCCHHHHH
Q ss_conf             10036789889974--012001224-630565413---89999997197865700
Q gi|254780489|r  228 KIMAQSAKQSLRKS--DLQPQDINR-FIPHQANSR---IIQKVCEKIGLSKRIMV  276 (325)
Q Consensus       228 ~~~~~~i~~~l~~~--gl~~~did~-~i~Hq~~~~---~~~~~~~~lgi~~~~~~  276 (325)
                      ..+.+.++++|+++  .+..+.+|. ++.-=++-+   +.+.+.+.+|.+.....
T Consensus       251 ~~~~~~i~~~L~~~~~~l~~d~~d~~ViLvGGsSriP~v~~~l~~~fg~~~~~~~  305 (327)
T pfam06723       251 SAIVEAVKEVLEKTPPELAADIVDRGIVLTGGGALLRGLDKLLSDETGLPVHIAE  305 (327)
T ss_pred             HHHHHHHHHHHHHCCHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf             9999999999985626452121478299977624414799999999784988898


No 370
>pfam01650 Peptidase_C13 Peptidase C13 family. Members of this family are asparaginyl peptidases. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expressed as active enzymes, albeit in various stages of activation. In addition, a Clan CD peptidase, termed asparaginyl endopeptidase or 'legumain' has been identified. This has formerly been characterized as a 'haemoglobinase', but this term is probably incorrect. Two cDNAs have been described for Schistosoma mansoni legumain; one encodes an active enzyme whereas the active site cysteine residue encoded by the second cDNA is substituted by an asparagine residue. Both forms have been recombinantly expressed.
Probab=23.66  E-value=38  Score=14.30  Aligned_cols=20  Identities=20%  Similarity=0.296  Sum_probs=9.2

Q ss_pred             HHHHHHHCCCCCCCCCEEEE
Q ss_conf             99986430132223442588
Q gi|254780489|r   62 GDIALRNANIKKDSISLTLL   81 (325)
Q Consensus        62 a~~aL~~a~~~~~dId~ii~   81 (325)
                      +-+.|++.|+..+.|=++.+
T Consensus        24 ~Y~~lk~~Gipd~~Iilm~~   43 (258)
T pfam01650        24 AYQLLKKFGIKDENIIVMMY   43 (258)
T ss_pred             HHHHHHHCCCCHHHEEEEEC
T ss_conf             99999985999899798605


No 371
>KOG0820 consensus
Probab=23.56  E-value=50  Score=13.51  Aligned_cols=14  Identities=21%  Similarity=0.444  Sum_probs=8.1

Q ss_pred             HHHHHHCCCCCCCC
Q ss_conf             99864301322234
Q gi|254780489|r   63 DIALRNANIKKDSI   76 (325)
Q Consensus        63 ~~aL~~a~~~~~dI   76 (325)
                      .+-.++|.+.|.|+
T Consensus        48 ~~I~~ka~~k~tD~   61 (315)
T KOG0820          48 DQIVEKADLKPTDV   61 (315)
T ss_pred             HHHHHCCCCCCCCE
T ss_conf             99986047899877


No 372
>PRK04841 transcriptional regulator MalT; Provisional
Probab=23.13  E-value=51  Score=13.46  Aligned_cols=20  Identities=15%  Similarity=0.152  Sum_probs=13.1

Q ss_pred             CCCCCCHHHHHHHHHHHHCC
Q ss_conf             01231012567657887438
Q gi|254780489|r  113 GACAGFLYALVMADSYINSH  132 (325)
Q Consensus       113 ~~C~g~l~aL~~A~~~i~~g  132 (325)
                      .-.-||..+|+++.-....+
T Consensus       213 ~~TeGW~a~l~L~~l~~~~~  232 (903)
T PRK04841        213 DRVEGWPTALQLIALSARQN  232 (903)
T ss_pred             HHHCCHHHHHHHHHHHHHCC
T ss_conf             97087899999999985307


No 373
>KOG0024 consensus
Probab=22.89  E-value=51  Score=13.43  Aligned_cols=11  Identities=27%  Similarity=0.603  Sum_probs=5.1

Q ss_pred             CCCEEEECCCC
Q ss_conf             12246305654
Q gi|254780489|r  247 DINRFIPHQAN  257 (325)
Q Consensus       247 did~~i~Hq~~  257 (325)
                      |+++++.|.-.
T Consensus       317 ~~k~lIT~r~~  327 (354)
T KOG0024         317 DVKPLITHRYK  327 (354)
T ss_pred             CCHHHEECCCC
T ss_conf             71133001246


No 374
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=22.77  E-value=50  Score=13.52  Aligned_cols=50  Identities=18%  Similarity=0.272  Sum_probs=27.1

Q ss_pred             HCCCHHHHHHHHHHHH--CCCCCCCCE-EEECCCCCHH---HHHHHHHCCCCHHHH
Q ss_conf             2010036789889974--012001224-6305654138---999999719786570
Q gi|254780489|r  226 AVKIMAQSAKQSLRKS--DLQPQDINR-FIPHQANSRI---IQKVCEKIGLSKRIM  275 (325)
Q Consensus       226 ~~~~~~~~i~~~l~~~--gl~~~did~-~i~Hq~~~~~---~~~~~~~lgi~~~~~  275 (325)
                      .+..+.+.++++|+++  .++.+.+|. ++.-=++.++   .+.+.+.+|+|....
T Consensus       251 ~~~~i~~~i~~~Le~~~~el~~di~d~GIvLvGGssrip~v~~~l~~~~g~~~~~~  306 (325)
T PRK13928        251 PVSAIVQAVKSVLERTPPELSADIIDKGIIMTGGGALLHGLDKLLAEETKVPVYIA  306 (325)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             99999999999997285544121126949998751332679999999978398778


No 375
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=22.30  E-value=53  Score=13.35  Aligned_cols=87  Identities=18%  Similarity=0.192  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC---CC-----CCCCCCCCCCCC-HHHHHHHHHHH
Q ss_conf             9999998643013222344258843100236887432211210023---86-----333421012310-12567657887
Q gi|254780489|r   59 IQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM---QS-----GAIDLTGACAGF-LYALVMADSYI  129 (325)
Q Consensus        59 ~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~---~~-----~~~di~~~C~g~-l~aL~~A~~~i  129 (325)
                      .+|..+|++.+=-++++--++| +|+...+.+|.+...-|.-+|..   +.     .-=|.--+|.|+ .+++-+...|+
T Consensus       171 kdAi~EA~r~wv~~~~~t~Y~i-GSv~gPHP~P~~Vr~fQsvIG~E~k~Q~~e~~G~~PD~vvaCVGGGSNa~G~f~pFl  249 (392)
T PRK04346        171 KDAVNEALRDWVTNVEDTHYII-GSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFI  249 (392)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCC
T ss_conf             9999999999984877728951-675789833889998999854999999999738999999987787611665321013


Q ss_pred             HCCCCEEEEEEECCCCCCC
Q ss_conf             4388505886201224444
Q gi|254780489|r  130 NSHQKPVLIIAANLLSRRI  148 (325)
Q Consensus       130 ~~g~~~vLVv~~e~~S~~~  148 (325)
                      .-  +.+=+|+.|...+.+
T Consensus       250 ~d--~~v~ligVEa~G~g~  266 (392)
T PRK04346        250 DD--PSVRLIGVEAAGKGL  266 (392)
T ss_pred             CC--CCEEEEEEECCCCCC
T ss_conf             68--751599985366777


No 376
>TIGR00014 arsC arsenate reductase; InterPro: IPR006659   This entry describes a distinct clade, including ArsC itself, of the broader family of ArsC and related proteins. This clade is almost completely restricted to the proteobacteria. An anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773 . When expressed in Escherichia coli this ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. The pump is composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate. ; GO: 0008794 arsenate reductase (glutaredoxin) activity, 0006118 electron transport.
Probab=22.27  E-value=53  Score=13.35  Aligned_cols=50  Identities=16%  Similarity=0.424  Sum_probs=37.1

Q ss_pred             HHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHH-HHH----HHHHCC
Q ss_conf             789889974012001224630565413899999971978657-002----185409
Q gi|254780489|r  233 SAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRI-MVN----SLKDFG  283 (325)
Q Consensus       233 ~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~-~~~----~l~~~G  283 (325)
                      ..-.+|++.|+.++=+ .++=.|+++.-++.+.++||++.-| ...    .|.+.|
T Consensus        14 ~tLalL~dkgi~P~vV-~YL~~pp~~seL~~~~~~LG~~~ar~~~R~ke~~y~eLg   68 (114)
T TIGR00014        14 QTLALLEDKGIEPEVV-KYLKNPPTKSELKALLAKLGISSAREMIRTKEELYKELG   68 (114)
T ss_pred             HHHHHHHHCCCCCEEE-ECCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCC
T ss_conf             9999998569995474-145897486889999987089703630117652100047


No 377
>pfam02685 Glucokinase Glucokinase. This is a family of glucokinases or glucose kinases EC:2.7.1.2. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP.
Probab=22.16  E-value=53  Score=13.34  Aligned_cols=48  Identities=19%  Similarity=0.102  Sum_probs=24.4

Q ss_pred             HHHHHHHHHCCCCCCCCCEEEEEEEEE---CCCCCCC------CCCCCCCCCCCCCC
Q ss_conf             999998643013222344258843100---2368874------32211210023863
Q gi|254780489|r   60 QAGDIALRNANIKKDSISLTLLATSTP---DHLLPPS------SPLITHRLGLMQSG  107 (325)
Q Consensus        60 ~Aa~~aL~~a~~~~~dId~ii~~s~t~---d~~~P~~------a~~v~~~Lg~~~~~  107 (325)
                      ++.++.|++.+.+..+++..+.+-.-|   +.....+      ...+++++|++++.
T Consensus        40 ~~l~~~l~~~~~~~~~~~~~~~avAGPv~~~~~~lTN~~W~i~~~~l~~~~g~~~v~   96 (316)
T pfam02685        40 EALQDYLAEADAGVARPRHACFAVAGPVDGDEVRLTNLPWVISIEELRAALGLDAVH   96 (316)
T ss_pred             HHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEECCCCEECHHHHHHHHCCCEEE
T ss_conf             999999984686667867699998677539978874786065599999972998599


No 378
>TIGR02365 dha_L_ycgS dihydroxyacetone kinase, L subunit; InterPro: IPR012737    Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated 2.7.1.29 from EC. By contract, Escherichia coli and many other bacterial species have a multisubunit form (2.7.1 from EC) with a phosphoprotein donor related to PTS transport proteins. The sequences in this entry represent the subunit homologous to the E. coli YcgS subunit..
Probab=22.05  E-value=42  Score=14.02  Aligned_cols=16  Identities=25%  Similarity=0.194  Sum_probs=9.3

Q ss_pred             CCCC--CCCHHHHHHHHH
Q ss_conf             0933--000599999999
Q gi|254780489|r  282 FGNS--SSASIPLSLSLE  297 (325)
Q Consensus       282 ~GN~--~sAsi~~~L~~~  297 (325)
                      .||.  |+.|..+.|..+
T Consensus       181 iGH~DPGA~SS~~~~~al  198 (200)
T TIGR02365       181 IGHIDPGATSSYLLLNAL  198 (200)
T ss_pred             CCCCCCHHHHHHHHHHHH
T ss_conf             455081678999999997


No 379
>KOG2865 consensus
Probab=22.02  E-value=21  Score=15.91  Aligned_cols=64  Identities=13%  Similarity=0.156  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             99999986430132223442588431002368874-------32211210023863334210123101256765788743
Q gi|254780489|r   59 IQAGDIALRNANIKKDSISLTLLATSTPDHLLPPS-------SPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINS  131 (325)
Q Consensus        59 ~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~-------a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~  131 (325)
                      .+.+|++.+.+|+-.+=|+.=   -.|..+.+-..       -++|+++.|..+-    |.-.|.|  .-+.--.+|+++
T Consensus       121 edSIr~vvk~sNVVINLIGrd---~eTknf~f~Dvn~~~aerlAricke~GVerf----IhvS~Lg--anv~s~Sr~Lrs  191 (391)
T KOG2865         121 EDSIRAVVKHSNVVINLIGRD---YETKNFSFEDVNVHIAERLARICKEAGVERF----IHVSCLG--ANVKSPSRMLRS  191 (391)
T ss_pred             HHHHHHHHHHCCEEEEEECCC---CCCCCCCCCCCCCHHHHHHHHHHHHHCHHHE----EEHHHCC--CCCCCHHHHHHH
T ss_conf             799999987475799840353---4458866120014589999999986283525----4165456--654576788776


No 380
>PRK04152 consensus
Probab=21.62  E-value=54  Score=13.27  Aligned_cols=34  Identities=9%  Similarity=0.091  Sum_probs=23.1

Q ss_pred             CCCEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEE
Q ss_conf             662099999973588613888999880999768311
Q gi|254780489|r    3 KSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQ   38 (325)
Q Consensus         3 ~~~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~   38 (325)
                      +-+-.|..+..|.|+..+  +++.+++|.+.+.|.+
T Consensus         2 ~~~~~i~~~~~y~~G~~i--~~~~~~~g~~p~~ii~   35 (364)
T PRK04152          2 KFNEFLNNLKTYEAGKPI--ELVVREYGIDPKDVIK   35 (364)
T ss_pred             CCCHHHCCCCCCCCCCCH--HHHHHHHCCCCCCEEE
T ss_conf             705665389998999999--9999982968124788


No 381
>CHL00181 cbbX CbbX; Provisional
Probab=21.59  E-value=55  Score=13.26  Aligned_cols=15  Identities=20%  Similarity=0.328  Sum_probs=8.8

Q ss_pred             CCCCCHHHHHHHHHC
Q ss_conf             565413899999971
Q gi|254780489|r  254 HQANSRIIQKVCEKI  268 (325)
Q Consensus       254 Hq~~~~~~~~~~~~l  268 (325)
                      +-+|.+..+.+.++.
T Consensus       236 ~FGNaR~vrnl~e~a  250 (287)
T CHL00181        236 LFANARSVRNAIDRA  250 (287)
T ss_pred             CCCCHHHHHHHHHHH
T ss_conf             987489999999999


No 382
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=21.29  E-value=43  Score=13.93  Aligned_cols=20  Identities=20%  Similarity=0.358  Sum_probs=16.8

Q ss_pred             CCCCCCCCEEEEEEEEECCC
Q ss_conf             13222344258843100236
Q gi|254780489|r   70 NIKKDSISLTLLATSTPDHL   89 (325)
Q Consensus        70 ~~~~~dId~ii~~s~t~d~~   89 (325)
                      -+++++||+||..+.-||+.
T Consensus        66 ~id~~~IDYIIvnH~EpDHS   85 (479)
T PRK05452         66 EIDLADIDYIVINHAEEDHA   85 (479)
T ss_pred             HCCCCCCCEEEECCCCCCHH
T ss_conf             45966798899689997547


No 383
>pfam11212 DUF2999 Protein of unknown function (DUF2999). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.18  E-value=49  Score=13.56  Aligned_cols=43  Identities=9%  Similarity=0.242  Sum_probs=24.6

Q ss_pred             HHHHHHHHCCCCCCCCEEEE-CCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf             89889974012001224630-56541389999997197865700
Q gi|254780489|r  234 AKQSLRKSDLQPQDINRFIP-HQANSRIIQKVCEKIGLSKRIMV  276 (325)
Q Consensus       234 i~~~l~~~gl~~~did~~i~-Hq~~~~~~~~~~~~lgi~~~~~~  276 (325)
                      |-..|++++++-+.|.-++- -.-|..+--.+...||||+||.-
T Consensus         4 Iia~LKehNvSdeqi~elFqalteNP~~AM~~i~qLGip~eKLQ   47 (82)
T pfam11212         4 IIAILKEHNVSDEQIKELFQALTENPLMAMATIQQLGIPPEKLQ   47 (82)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHH
T ss_conf             99999982887999999999985297999999998089999999


No 384
>TIGR00878 purM phosphoribosylformylglycinamidine cyclo-ligase; InterPro: IPR004733   The purine biosynthetic pathway in procaryotes enlists eleven enzymes, six of which use ATP. Enzymes 5 and 6 of this pathway, formylglycinamide ribonucleotide (FGAR) amidotransferase (PurL) and aminoimidazole ribonucleotide (AIR) synthetase (PurM) utilise ATP to activate the oxygen of an amide within their substrate toward nucleophilic attack by a nitrogen. AIR synthetase uses the product of PurL, formylglycinamidine ribonucleotide (FGAM) and ATP to make AIR, ADP and P(i).; GO: 0004641 phosphoribosylformylglycinamidine cyclo-ligase activity, 0006189 'de novo' IMP biosynthetic process, 0005737 cytoplasm.
Probab=21.14  E-value=55  Score=13.25  Aligned_cols=66  Identities=6%  Similarity=0.222  Sum_probs=39.6

Q ss_pred             CCHHHHHHHCCCH---HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCC-----------CCHHHHHHHHHHCC
Q ss_conf             5145434320100---367898899740120012246305654138999999719-----------78657002185409
Q gi|254780489|r  218 NGADIFYNAVKIM---AQSAKQSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIG-----------LSKRIMVNSLKDFG  283 (325)
Q Consensus       218 ~g~~v~~~~~~~~---~~~i~~~l~~~gl~~~did~~i~Hq~~~~~~~~~~~~lg-----------i~~~~~~~~l~~~G  283 (325)
                      .|+.|-+..++.-   .+-|.+++++    -.||+ =+.|=-+.-+++.+.+.|.           .|..++++-+++.|
T Consensus       215 ~gk~lgE~LL~PTRIYVKpiL~li~~----~~ev~-GlAHiTGGGl~eNl~r~L~~~~~a~~D~~~~~~~piF~~i~~~G  289 (338)
T TIGR00878       215 EGKTLGEELLEPTRIYVKPILALIKS----EKEVH-GLAHITGGGLLENLLRRLPDGLKAVIDKGSWPQPPIFKWIQELG  289 (338)
T ss_pred             CCCCHHHHHCCCCCCCHHHHHHHHHC----CCCEE-EEEEECCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf             67231442238962044789999737----78604-77755164034569986589978998568988316889998608


Q ss_pred             CCCCC
Q ss_conf             33000
Q gi|254780489|r  284 NSSSA  288 (325)
Q Consensus       284 N~~sA  288 (325)
                      |.-..
T Consensus       290 ~V~~~  294 (338)
T TIGR00878       290 NVEEE  294 (338)
T ss_pred             CCCHH
T ss_conf             98755


No 385
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=21.08  E-value=52  Score=13.41  Aligned_cols=36  Identities=17%  Similarity=0.308  Sum_probs=16.3

Q ss_pred             CHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             145434320100367898899740120012246305
Q gi|254780489|r  219 GADIFYNAVKIMAQSAKQSLRKSDLQPQDINRFIPH  254 (325)
Q Consensus       219 g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~i~H  254 (325)
                      .+++|+..+..+.+---+.++..+|.|=|=||.+++
T Consensus       191 p~~vf~~ev~kL~~~~f~i~e~~~LePye~DH~~i~  226 (231)
T COG1889         191 PEEVFKDEVEKLEEGGFEILEVVDLEPYEKDHALIV  226 (231)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEE
T ss_conf             899999999999856950467763677666428999


No 386
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=20.95  E-value=43  Score=13.97  Aligned_cols=18  Identities=28%  Similarity=0.362  Sum_probs=15.8

Q ss_pred             CCCCCCCEEEEEEEEECC
Q ss_conf             322234425884310023
Q gi|254780489|r   71 IKKDSISLTLLATSTPDH   88 (325)
Q Consensus        71 ~~~~dId~ii~~s~t~d~   88 (325)
                      +++++||+||..+.-||+
T Consensus        65 i~~~~IdYiVvnH~EPDH   82 (395)
T PRK11921         65 IDLDKIDYIVANHGEIDH   82 (395)
T ss_pred             CCCCCCCEEEECCCCCCH
T ss_conf             596569999938999757


No 387
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain.  In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=20.28  E-value=58  Score=13.09  Aligned_cols=39  Identities=15%  Similarity=0.329  Sum_probs=23.1

Q ss_pred             HHHHHCCCCCCCCEEEECCCCCHHHHHH---HHHCCCCHHHHHH
Q ss_conf             8997401200122463056541389999---9971978657002
Q gi|254780489|r  237 SLRKSDLQPQDINRFIPHQANSRIIQKV---CEKIGLSKRIMVN  277 (325)
Q Consensus       237 ~l~~~gl~~~did~~i~Hq~~~~~~~~~---~~~lgi~~~~~~~  277 (325)
                      .+.+..+...+.+.++|  +...|++.+   .+++|+|++++..
T Consensus       183 ~l~~~~~~~~~~~~yiC--GP~~m~~~v~~~L~~~Gv~~~~Ih~  224 (228)
T cd06209         183 HLEAEDLNDGDVDVYLC--GPPPMVDAVRSWLDEQGIEPANFYY  224 (228)
T ss_pred             HHHHHCCCCCCCEEEEE--CCHHHHHHHHHHHHHCCCCHHHEEE
T ss_conf             88752478899799995--9999999999999986998899388


No 388
>KOG2112 consensus
Probab=20.22  E-value=58  Score=13.08  Aligned_cols=18  Identities=17%  Similarity=0.087  Sum_probs=9.2

Q ss_pred             CCCCCHHHHHHHHHHHHC
Q ss_conf             123101256765788743
Q gi|254780489|r  114 ACAGFLYALVMADSYINS  131 (325)
Q Consensus       114 ~C~g~l~aL~~A~~~i~~  131 (325)
                      -|.++..+.+...++++.
T Consensus        67 d~~~~~~aa~~i~~Li~~   84 (206)
T KOG2112          67 DEEGLHRAADNIANLIDN   84 (206)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             156788999999999998


No 389
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=20.18  E-value=58  Score=13.07  Aligned_cols=22  Identities=5%  Similarity=-0.074  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99999999999864301322234
Q gi|254780489|r   54 LTDIAIQAGDIALRNANIKKDSI   76 (325)
Q Consensus        54 ~~~la~~Aa~~aL~~a~~~~~dI   76 (325)
                      -.+|= +..++-|++.|++..|+
T Consensus        11 G~~lK-~~i~~~L~~~g~~v~D~   32 (141)
T PRK12613         11 GNALK-ELIKSFLQEEGYDIIDV   32 (141)
T ss_pred             HHHHH-HHHHHHHHHCCCEEEEC
T ss_conf             49999-99999999879986807


Done!