HHsearch alignment for GI: 254780489 and conserved domain: pfam01154
>pfam01154 HMG_CoA_synt_N Hydroxymethylglutaryl-coenzyme A synthase N terminal.
Probab=99.86 E-value=4.9e-21 Score=157.34 Aligned_cols=163 Identities=18% Similarity=0.198 Sum_probs=143.8
Q ss_pred CEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
Q ss_conf 20999999735886138889998809997683111475088994898879999999999986430132223442588431
Q gi|254780489|r 5 SSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLATS 84 (325)
Q Consensus 5 ~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~ 84 (325)
T Consensus 1 ~VGI~~i~~Y~P~~~v~~~~La~~rg~d~~K~~~GlG~~~mav~~~~ED~vTmAanAa~~ll~~~~i~~~~Ig~l~vgTE 80 (171)
T pfam01154 1 DVGIVALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVQKLMERNNLDYDCIGRLEVGTE 80 (171)
T ss_pred CCCEEEEEEECCHHEECHHHHHHHHCCCHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEECCC
T ss_conf 98987898847711135999999959898885204586354279997279999999999999873999888407996377
Q ss_pred EECCCCCCCCCCCCCCCCCC-C--CCCCCCCCCCCCCHHHHHHHHHHHHCCC---CEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 00236887432211210023-8--6333421012310125676578874388---5058862012244446222443432
Q gi|254780489|r 85 TPDHLLPPSSPLITHRLGLM-Q--SGAIDLTGACAGFLYALVMADSYINSHQ---KPVLIIAANLLSRRINLEDKDTAII 158 (325)
Q Consensus 85 t~d~~~P~~a~~v~~~Lg~~-~--~~~~di~~~C~g~l~aL~~A~~~i~~g~---~~vLVv~~e~~S~~~d~~d~~~~~l 158 (325)
T Consensus 81 S~iD~SKs~~t~l~~ll~~~~~~~~~~~e~k~ACyggTaAL~~a~~~v~s~~~~~k~alVV~sDiA~--y~~~~~--e~T 156 (171)
T pfam01154 81 TIIDKSKSVKTVLMQLFEESGNTDIEGIDTTNACYGGTAALFNALNWIESSSWDGRYALVVAGDIAI--YAKGNA--RPT 156 (171)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--CCCCCC--CCC
T ss_conf 6456655689999998376578874033300106989999999999998288789639999841001--379998--756
Q ss_pred CCCCEEEEEECCC
Q ss_conf 5442001122057
Q gi|254780489|r 159 FGDAAGAVVLAPS 171 (325)
Q Consensus 159 fGDgA~A~il~~~ 171 (325)
T Consensus 157 qGAGAVAmLv~~n 169 (171)
T pfam01154 157 GGAGAVAMLIGPN 169 (171)
T ss_pred CCCCEEEEEECCC
T ss_conf 7703589997589