HHsearch alignment for GI: 254780489 and conserved domain: pfam08540
>pfam08540 HMG_CoA_synt_C Hydroxymethylglutaryl-coenzyme A synthase C terminal.
Probab=98.02 E-value=5.6e-05 Score=52.39 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=65.3
Q ss_pred CCHHHHHHHCCCHHHHHHHHHHH---------HCCCCCCCCEEEECCCCCHHHHHHHHHC--------------------
Q ss_conf 51454343201003678988997---------4012001224630565413899999971--------------------
Q gi|254780489|r 218 NGADIFYNAVKIMAQSAKQSLRK---------SDLQPQDINRFIPHQANSRIIQKVCEKI-------------------- 268 (325)
Q Consensus 218 ~g~~v~~~~~~~~~~~i~~~l~~---------~gl~~~did~~i~Hq~~~~~~~~~~~~l-------------------- 268 (325)
T Consensus 31 DGk~Si~cYl~ALd~cy~~Y~~K~~~~~~~~~~~~~ld~fd~~~FH~Py~KlvqKs~arl~~nD~~~~~~~~~~~~~~~~ 110 (282)
T pfam08540 31 DGKLSLQCYLKALDSCYKNYCKKIEKQTKDGGTKFGLDDFDYVIFHSPYCKLVQKSLARLLYNDFLRNPSSDKGNGVYEK 110 (282)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHH
T ss_conf 72889999999999999999999873002367766376677899857544899999999998765306552011000111
Q ss_pred -----CCCHH----------------------HH-HH--HHHHCCCCCCCHHHHHHHHHHHHCCC--CCCCEEEEEEECC
Q ss_conf -----97865----------------------70-02--18540933000599999999980678--9998999998615
Q gi|254780489|r 269 -----GLSKR----------------------IM-VN--SLKDFGNSSSASIPLSLSLENQRKPF--QKGEKILTISCRR 316 (325)
Q Consensus 269 -----gi~~~----------------------~~-~~--~l~~~GN~~sAsi~~~L~~~~~~g~i--~~Gd~vll~~~G~ 316 (325)
T Consensus 111 l~~~~~~~~e~s~~dk~~ek~~~~~sk~~f~~kv~psl~~~~~vGNmYTaSlY~~L~SLL~~~~~~~L~GkRIg~FSYGS 190 (282)
T pfam08540 111 LEALGGLKLEDSYTDRDLEKAFMQLSKPLFKKKTKPSLLLPTQVGNMYTASLYAALASLLSHVSADELAGKRIGMFSYGS 190 (282)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC
T ss_conf 10001464454010068999999870898986326187887860750069999999999843775234899899985166
Q ss_pred CCCCCCCC
Q ss_conf 51020101
Q gi|254780489|r 317 GNDRGIYC 324 (325)
Q Consensus 317 G~s~ga~l 324 (325)
T Consensus 191 Glaas~FS 198 (282)
T pfam08540 191 GLAASLFS 198 (282)
T ss_pred CCCEEEEE
T ss_conf 61124675