HHsearch alignment for GI: 254780489 and conserved domain: pfam08540

>pfam08540 HMG_CoA_synt_C Hydroxymethylglutaryl-coenzyme A synthase C terminal.
Probab=98.02  E-value=5.6e-05  Score=52.39  Aligned_cols=107  Identities=19%  Similarity=0.220  Sum_probs=65.3

Q ss_pred             CCHHHHHHHCCCHHHHHHHHHHH---------HCCCCCCCCEEEECCCCCHHHHHHHHHC--------------------
Q ss_conf             51454343201003678988997---------4012001224630565413899999971--------------------
Q gi|254780489|r  218 NGADIFYNAVKIMAQSAKQSLRK---------SDLQPQDINRFIPHQANSRIIQKVCEKI--------------------  268 (325)
Q Consensus       218 ~g~~v~~~~~~~~~~~i~~~l~~---------~gl~~~did~~i~Hq~~~~~~~~~~~~l--------------------  268 (325)
T Consensus        31 DGk~Si~cYl~ALd~cy~~Y~~K~~~~~~~~~~~~~ld~fd~~~FH~Py~KlvqKs~arl~~nD~~~~~~~~~~~~~~~~  110 (282)
T pfam08540        31 DGKLSLQCYLKALDSCYKNYCKKIEKQTKDGGTKFGLDDFDYVIFHSPYCKLVQKSLARLLYNDFLRNPSSDKGNGVYEK  110 (282)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHH
T ss_conf             72889999999999999999999873002367766376677899857544899999999998765306552011000111


Q ss_pred             -----CCCHH----------------------HH-HH--HHHHCCCCCCCHHHHHHHHHHHHCCC--CCCCEEEEEEECC
Q ss_conf             -----97865----------------------70-02--18540933000599999999980678--9998999998615
Q gi|254780489|r  269 -----GLSKR----------------------IM-VN--SLKDFGNSSSASIPLSLSLENQRKPF--QKGEKILTISCRR  316 (325)
Q Consensus       269 -----gi~~~----------------------~~-~~--~l~~~GN~~sAsi~~~L~~~~~~g~i--~~Gd~vll~~~G~  316 (325)
T Consensus       111 l~~~~~~~~e~s~~dk~~ek~~~~~sk~~f~~kv~psl~~~~~vGNmYTaSlY~~L~SLL~~~~~~~L~GkRIg~FSYGS  190 (282)
T pfam08540       111 LEALGGLKLEDSYTDRDLEKAFMQLSKPLFKKKTKPSLLLPTQVGNMYTASLYAALASLLSHVSADELAGKRIGMFSYGS  190 (282)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC
T ss_conf             10001464454010068999999870898986326187887860750069999999999843775234899899985166


Q ss_pred             CCCCCCCC
Q ss_conf             51020101
Q gi|254780489|r  317 GNDRGIYC  324 (325)
Q Consensus       317 G~s~ga~l  324 (325)
T Consensus       191 Glaas~FS  198 (282)
T pfam08540       191 GLAASLFS  198 (282)
T ss_pred             CCCEEEEE
T ss_conf             61124675