HHsearch alignment for GI: 254780489 and conserved domain: smart00825

>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=99.41  E-value=1.5e-12  Score=101.93  Aligned_cols=222  Identities=19%  Similarity=0.234  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCE----EEEEEEEECCC--------------C----CC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999986430132223442----58843100236--------------8----87-43221121002386333421
Q gi|254780489|r   56 DIAIQAGDIALRNANIKKDSISL----TLLATSTPDHL--------------L----PP-SSPLITHRLGLMQSGAIDLT  112 (325)
Q Consensus        56 ~la~~Aa~~aL~~a~~~~~dId~----ii~~s~t~d~~--------------~----P~-~a~~v~~~Lg~~~~~~~di~  112 (325)
T Consensus        89 rl~L~~a~~Al~dAG~~~~~l~~~r~GV~vG~~~~d~~~~~~~~~~~~~~~~~~~~~~s~~a~ris~~~~l~G-p~~~vd  167 (424)
T smart00825       89 RLLLEVAWEALEDAGIDPESLRGSRTGVFVGAMSSDYAELLARDPEDIEGYAATGTARSFIANRISYFFDLRG-PSVTVD  167 (424)
T ss_pred             HHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CEEEEC
T ss_conf             9999999999997399835658874389997516637777641755578520245317689999999858999-635141


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCE-EEEEEECCC-CC----------CCC------CCC-CCCCCCCCCCEEEEEECCCCC
Q ss_conf             01231012567657887438850-588620122-44----------446------222-443432544200112205765
Q gi|254780489|r  113 GACAGFLYALVMADSYINSHQKP-VLIIAANLL-SR----------RIN------LED-KDTAIIFGDAAGAVVLAPSPL  173 (325)
Q Consensus       113 ~~C~g~l~aL~~A~~~i~~g~~~-vLVv~~e~~-S~----------~~d------~~d-~~~~~lfGDgA~A~il~~~~~  173 (325)
T Consensus       168 tACsSsl~Al~~A~~~i~~G~~D~alvGg~~~~~~p~~~~~~~~~~~lS~~g~~rpFD~~adG~v~gEGa~~lvLk~l~~  247 (424)
T smart00825      168 TACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGFSRAGMLSPDGRCKTFDADADGYVRGEGVGVVVLKRLSD  247 (424)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHH
T ss_conf             47289999999999999769963300142667348789999861578799998755778899841047657997465999


Q ss_pred             C--CCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf             4--44531135532136776527830698667654455655232245145434320100367898899740120012246
Q gi|254780489|r  174 K--DKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDINRF  251 (325)
Q Consensus       174 ~--~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~  251 (325)
T Consensus       248 A~~~g~~Iya~I~G~-~~~~d------G----------~~~~~~~P~~--------~~~~~~~~~Al~~a~i~p~~I~yi  302 (424)
T smart00825      248 ALRDGDPILAVIRGS-AVNQD------G----------RSNGLTAPSG--------PAQARLIRQALARAGVDPADVDYV  302 (424)
T ss_pred             HHHCCCCEEEEEECE-EEECC------C----------CCCCCCCCCH--------HHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf             987699179999343-78258------9----------8787789998--------999999999999829896646879


Q ss_pred             EECCCCCHH-----HHHHHHHCCCC--HHH-H-HH-HHHHCCCCCCCHHHHHHHH---HHHHCCC
Q ss_conf             305654138-----99999971978--657-0-02-1854093300059999999---9980678
Q gi|254780489|r  252 IPHQANSRI-----IQKVCEKIGLS--KRI-M-VN-SLKDFGNSSSASIPLSLSL---ENQRKPF  303 (325)
Q Consensus       252 i~Hq~~~~~-----~~~~~~~lgi~--~~~-~-~~-~l~~~GN~~sAsi~~~L~~---~~~~g~i  303 (325)
T Consensus       303 eaHgtgt~~gD~~E~~al~~~f~~~~~~~~~~~igS~K~~~GH~~~AaG~~~lik~~lal~~~~i  367 (424)
T smart00825      303 EAHGTGTPLGDPIEAEALAAVFGQGRPRDGPLLLGSVKSNIGHLEAAAGVAGLIKVVLALRHGTI  367 (424)
T ss_pred             EECCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             96036687779999999999962368877842520453442333777899999999999856970