BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780489|ref|YP_003064902.1| 3-oxoacyl-(acyl carrier
protein) synthase II [Candidatus Liberibacter asiaticus str. psy62]
         (325 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780489|ref|YP_003064902.1| 3-oxoacyl-(acyl carrier protein) synthase II [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 325

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/325 (100%), Positives = 325/325 (100%)

Query: 1   MIKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQ 60
           MIKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQ
Sbjct: 1   MIKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQ 60

Query: 61  AGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLY 120
           AGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLY
Sbjct: 61  AGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLY 120

Query: 121 ALVMADSYINSHQKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAVVLAPSPLKDKSGIL 180
           ALVMADSYINSHQKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAVVLAPSPLKDKSGIL
Sbjct: 121 ALVMADSYINSHQKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAVVLAPSPLKDKSGIL 180

Query: 181 GIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRK 240
           GIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRK
Sbjct: 181 GIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRK 240

Query: 241 SDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQR 300
           SDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQR
Sbjct: 241 SDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQR 300

Query: 301 KPFQKGEKILTISCRRGNDRGIYCL 325
           KPFQKGEKILTISCRRGNDRGIYCL
Sbjct: 301 KPFQKGEKILTISCRRGNDRGIYCL 325


>gi|254780497|ref|YP_003064910.1| 3-oxoacyl-(acyl carrier protein) synthase III [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 324

 Score =  172 bits (436), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 105/315 (33%), Positives = 175/315 (55%), Gaps = 13/315 (4%)

Query: 1   MIKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQ 60
           MI+S+  + G G ++P + + NS +E  ++   G I+++ GI  R+ A K ET   +   
Sbjct: 1   MIRST--VRGIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEA 58

Query: 61  AGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLY 120
           A   AL +A +  D I L ++ATSTPD   P ++  I +RLG+ +  A D+   C+GF+Y
Sbjct: 59  AARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVY 118

Query: 121 ALVMADSYINSH-QKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAVVLAPSPLKDKS-- 177
           A+  ADSYI S   + V++I ++  SR ++  D+ T ++FGD AGA++L    +K  S  
Sbjct: 119 AVTTADSYIRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMA 178

Query: 178 --GILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAK 235
             GIL   L SDGS  D + +  G STS               G  +F  AV+   +  +
Sbjct: 179 DTGILSTYLCSDGSYIDKLYVDGGPSTSRTVGCIR------MEGKAVFKYAVEKAVELIE 232

Query: 236 QSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLS 295
           +    + L  ++I+ F+PHQAN RII  + +K+ +    ++ ++   GN+S+ASIPL+L+
Sbjct: 233 KVFDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASIPLALA 292

Query: 296 LENQRKPFQKGEKIL 310
           +  +    +KG+ +L
Sbjct: 293 VAVKEGRVKKGDCLL 307


>gi|254780377|ref|YP_003064790.1| flagellar basal body P-ring biosynthesis protein FlgA [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 152

 Score = 25.8 bits (55), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 19/74 (25%)

Query: 51  HETLTDIAIQAGDI---------ALRNANIK-------KDSISLTLLATSTPDHLLPPSS 94
           H  +  + I AG++          + N+NI+       KD + L       PDH++P S 
Sbjct: 27  HAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLS- 85

Query: 95  PLITHRLGLMQSGA 108
             + HR  ++  GA
Sbjct: 86  --VLHRPYVISRGA 97


>gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 343

 Score = 24.6 bits (52), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 42 IKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLAT 83
          I  + WA +  T     I  GD+ + NA  K+ ++S+ L  T
Sbjct: 21 ISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYET 62


>gi|254781128|ref|YP_003065541.1| hypothetical protein CLIBASIA_05150 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 225

 Score = 24.6 bits (52), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 123 VMADSYINSHQKPVLIIAANLLSRRINLEDKDTAIIFGDAAG--AVVLAPSPLKDKSGIL 180
           V AD     HQ PV +   +L    I L+ +D  +++G + G     L P    D   + 
Sbjct: 58  VAADFSKIDHQSPVRLQNLSLNGVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGDKVA 117

Query: 181 GIELTSDGSKYD 192
           G  L   G  +D
Sbjct: 118 GTLLFRTGFTFD 129


>gi|254780767|ref|YP_003065180.1| lipid-A-disaccharide synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 383

 Score = 23.1 bits (48), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 77  SLTLLATSTPDHLLPPSSPLITHRLG 102
           ++ L+ +S PD LL   +P  THR+ 
Sbjct: 80  TVELIVSSKPDVLLIVDNPDFTHRVA 105


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.135    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,149
Number of Sequences: 1233
Number of extensions: 8272
Number of successful extensions: 31
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 6
length of query: 325
length of database: 328,796
effective HSP length: 74
effective length of query: 251
effective length of database: 237,554
effective search space: 59626054
effective search space used: 59626054
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 38 (19.2 bits)