BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780489|ref|YP_003064902.1| 3-oxoacyl-(acyl carrier protein) synthase II [Candidatus Liberibacter asiaticus str. psy62] (325 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780489|ref|YP_003064902.1| 3-oxoacyl-(acyl carrier protein) synthase II [Candidatus Liberibacter asiaticus str. psy62] Length = 325 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/325 (100%), Positives = 325/325 (100%) Query: 1 MIKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQ 60 MIKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQ Sbjct: 1 MIKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQ 60 Query: 61 AGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLY 120 AGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLY Sbjct: 61 AGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLY 120 Query: 121 ALVMADSYINSHQKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAVVLAPSPLKDKSGIL 180 ALVMADSYINSHQKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAVVLAPSPLKDKSGIL Sbjct: 121 ALVMADSYINSHQKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAVVLAPSPLKDKSGIL 180 Query: 181 GIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRK 240 GIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRK Sbjct: 181 GIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRK 240 Query: 241 SDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQR 300 SDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQR Sbjct: 241 SDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQR 300 Query: 301 KPFQKGEKILTISCRRGNDRGIYCL 325 KPFQKGEKILTISCRRGNDRGIYCL Sbjct: 301 KPFQKGEKILTISCRRGNDRGIYCL 325 >gi|254780497|ref|YP_003064910.1| 3-oxoacyl-(acyl carrier protein) synthase III [Candidatus Liberibacter asiaticus str. psy62] Length = 324 Score = 172 bits (436), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 105/315 (33%), Positives = 175/315 (55%), Gaps = 13/315 (4%) Query: 1 MIKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQ 60 MI+S+ + G G ++P + + NS +E ++ G I+++ GI R+ A K ET + Sbjct: 1 MIRST--VRGIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEA 58 Query: 61 AGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLY 120 A AL +A + D I L ++ATSTPD P ++ I +RLG+ + A D+ C+GF+Y Sbjct: 59 AARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVY 118 Query: 121 ALVMADSYINSH-QKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAVVLAPSPLKDKS-- 177 A+ ADSYI S + V++I ++ SR ++ D+ T ++FGD AGA++L +K S Sbjct: 119 AVTTADSYIRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMA 178 Query: 178 --GILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAK 235 GIL L SDGS D + + G STS G +F AV+ + + Sbjct: 179 DTGILSTYLCSDGSYIDKLYVDGGPSTSRTVGCIR------MEGKAVFKYAVEKAVELIE 232 Query: 236 QSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLS 295 + + L ++I+ F+PHQAN RII + +K+ + ++ ++ GN+S+ASIPL+L+ Sbjct: 233 KVFDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASIPLALA 292 Query: 296 LENQRKPFQKGEKIL 310 + + +KG+ +L Sbjct: 293 VAVKEGRVKKGDCLL 307 >gi|254780377|ref|YP_003064790.1| flagellar basal body P-ring biosynthesis protein FlgA [Candidatus Liberibacter asiaticus str. psy62] Length = 152 Score = 25.8 bits (55), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 19/74 (25%) Query: 51 HETLTDIAIQAGDI---------ALRNANIK-------KDSISLTLLATSTPDHLLPPSS 94 H + + I AG++ + N+NI+ KD + L PDH++P S Sbjct: 27 HAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLS- 85 Query: 95 PLITHRLGLMQSGA 108 + HR ++ GA Sbjct: 86 --VLHRPYVISRGA 97 >gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 343 Score = 24.6 bits (52), Expect = 2.1, Method: Compositional matrix adjust. Identities = 13/42 (30%), Positives = 21/42 (50%) Query: 42 IKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLAT 83 I + WA + T I GD+ + NA K+ ++S+ L T Sbjct: 21 ISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYET 62 >gi|254781128|ref|YP_003065541.1| hypothetical protein CLIBASIA_05150 [Candidatus Liberibacter asiaticus str. psy62] Length = 225 Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 123 VMADSYINSHQKPVLIIAANLLSRRINLEDKDTAIIFGDAAG--AVVLAPSPLKDKSGIL 180 V AD HQ PV + +L I L+ +D +++G + G L P D + Sbjct: 58 VAADFSKIDHQSPVRLQNLSLNGVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGDKVA 117 Query: 181 GIELTSDGSKYD 192 G L G +D Sbjct: 118 GTLLFRTGFTFD 129 >gi|254780767|ref|YP_003065180.1| lipid-A-disaccharide synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 383 Score = 23.1 bits (48), Expect = 6.2, Method: Compositional matrix adjust. Identities = 10/26 (38%), Positives = 16/26 (61%) Query: 77 SLTLLATSTPDHLLPPSSPLITHRLG 102 ++ L+ +S PD LL +P THR+ Sbjct: 80 TVELIVSSKPDVLLIVDNPDFTHRVA 105 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.135 0.386 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 203,149 Number of Sequences: 1233 Number of extensions: 8272 Number of successful extensions: 31 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 6 length of query: 325 length of database: 328,796 effective HSP length: 74 effective length of query: 251 effective length of database: 237,554 effective search space: 59626054 effective search space used: 59626054 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 38 (19.2 bits)