HHsearch alignment for GI: 254780490 and conserved domain: cd00800
>cd00800 INT_Lambda_C Lambda integrase, C-terminal catalytic domain. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.
Probab=99.14 E-value=2.9e-11 Score=78.83 Aligned_cols=40 Identities=30% Similarity=0.440 Sum_probs=35.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 2160363899999999808999999998488888999999863
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~ 44 (67)
T Consensus 122 ~~t~H~lRht~at~~~~~g~---~~q~llGH~s~~~T~~Y~r~ 161 (162)
T cd00800 122 PPTFHDIRAKAASDYEEQGK---DAQALLGHKDEKMTKIYRRK 161 (162)
T ss_pred CCCHHHHHHHHHHHHHHCCH---HHHHHCCCCCHHHHHHHCCC
T ss_conf 66018889999999873748---89998099998997066068