HHsearch alignment for GI: 254780490 and conserved domain: cd01183
>cd01183 INT_SG1_C INT_SG1, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 1, C-terminal catalytic domain. The CD contains mainly predicted integrase/recombinase and site-specific XerD recombinases. The members of this CD are found predominantly in proteobacteria. These proteins have not been biochemically characerised as yet.
Probab=99.72 E-value=2.8e-18 Score=114.88 Aligned_cols=42 Identities=38% Similarity=0.593 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 216036389999999980899999999848888899999986
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~ 43 (67)
T Consensus 155 ~~spH~LRHt~At~ll~~G~~l~~Vq~~LGH~si~TT~~Y~H 196 (196)
T cd01183 155 AASTHWLRHTHASHDLAAGVPLEHVQDNLGHASIDTTSRYLH 196 (196)
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHCCC
T ss_conf 678832589999999987999999998808998678734339