HHsearch alignment for GI: 254780490 and conserved domain: cd01184
>cd01184 INT_SG2_C INT_SG2, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 2, C-terminal catalytic domain. The CD contains mainly predicted integrase/recombinases and phage-related integrases. Some have N-terminal domains, which show little sequence similarity to each other. Members of this subgroup are predominantly found in proteobacteria.
Probab=99.43 E-value=4.8e-14 Score=93.13 Aligned_cols=41 Identities=34% Similarity=0.501 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHH-HHH
Q ss_conf 21603638999999998089999999984888889999-998
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYT 42 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~-~Y~ 42 (67)
T Consensus 139 ~~~~H~lRHT~aT~l~~~gv~~~~v~~~lGHss~~tT~~~Yg 180 (181)
T cd01184 139 GKSFHSFRHTFITELRNAGVSRELIAAIMGHEEGTTTFGRYG 180 (181)
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCC
T ss_conf 897864689999999986989999999828999886425308