HHsearch alignment for GI: 254780490 and conserved domain: cd01187

>cd01187 INT_SG4 INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases for which not much biochemical characterization is available.
Probab=99.75  E-value=1.8e-18  Score=115.92  Aligned_cols=54  Identities=28%  Similarity=0.455  Sum_probs=49.7

Q ss_pred             CCCCCCHHHHHHHHHH----HHCCCHH----HHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             2160363899999999----8089999----9999848888899999986399999999999
Q gi|254780490|r    2 STTAHTLRHSFATHLL----SNGGDLR----SIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ   55 (67)
Q Consensus         2 ~~tpH~lRHt~at~l~----~~G~~~~----~vq~lLGH~~i~tT~~Y~~~~~~~~~~~~~~   55 (67)
T Consensus       237 ~~~pH~LRHtfAt~~l~~~~~~G~di~~~L~~lq~~LGH~si~tT~~Y~h~~~e~l~~a~~r  298 (299)
T cd01187         237 GPRLHDLRHRFAVTRLTRWYRAGADVERKLPVLATYLGHANITDTYWYLHASPELMELAARR  298 (299)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHH
T ss_conf             99976571389999999998679973433999999748998688898880399999999850