HHsearch alignment for GI: 254780490 and conserved domain: cd01193
>cd01193 INT_IntI IntI (E2) integrases, site-specific tyrosine recombinases, DNA breaking-rejoining enzymes, N- and C-terminal domains. This CD includes integrases which are components of multiresistant integrons and mediate recombination between a proximal attI site and a secondary target called the attC (or 59-base element) present on various mobile gene cassettes. Integron-integrases are present in many natural occurring mobile elements, including transposons and conjugative plasmids. Vibrio, Shewanella, Xanthomonas and Pseudomonas species harbor chromosomal super-integrons. All integron-integrases carry large inserts unlike the TnpF ermF-like proteins also seen in this group.
Probab=99.72 E-value=4.5e-18 Score=113.81 Aligned_cols=43 Identities=67% Similarity=0.971 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 2160363899999999808999999998488888999999863
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~ 44 (67)
T Consensus 200 ~~~~H~lRHT~at~ll~~G~~l~~v~~~lGH~si~tT~~Y~Hv 242 (242)
T cd01193 200 RVTPHTLRHSFATHLLEAGYDIRTIQELLGHSDLKTTMIYTHV 242 (242)
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 9886748999999999879999999988399888899870583