HHsearch alignment for GI: 254780490 and conserved domain: cd01198

>cd01198 INT_ASSRA_C Archaeal site-specific recombinase A (ASSRA), DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal catalytic domain. Members of this CD are archael in origin. No biochemical characterization is available for the proteins of this subgroup at this point.
Probab=99.91  E-value=4.1e-25  Score=150.07  Aligned_cols=60  Identities=33%  Similarity=0.497  Sum_probs=58.2

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCHHHH
Q ss_conf             216036389999999980899999999848888899999986399999999999582113
Q gi|254780490|r    2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT   61 (67)
Q Consensus         2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~~~~~~~~~~~p~~~   61 (67)
T Consensus       127 ~vtPH~lRHtfAT~Ll~~G~dl~~vq~lLGHssi~tT~~Y~h~~~~~l~e~y~k~~Pr~~  186 (186)
T cd01198         127 NFTPHCFRHFFTTWLRRRGGDRGVVQELRGDSRDEAIDTYTHIWGDELREAYLKHIPSLG  186 (186)
T ss_pred             CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf             758516389999999986999999999948998899999984799999999998588998