HHsearch alignment of GI: 254780490 and MMDB domain: 1aih_A_1-49_87-170
>1aih_A (A:1-49,A:87-170) HP1 integrase; DNA integration, recombination; 2.50A {Bacteriophage HP1}
Probab=99.67 E-value=1.5e-17 Score=110.79 Aligned_cols=61 Identities=30% Similarity=0.557 Sum_probs=56.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCHHHHHH
Q ss_conf 21603638999999998089999999984888889999998639999999999958211333
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~~~~~~~~~~~p~~~~k 63 (67)
++|||+|||||||+++++|+|+..||++|||+|++||++|++++.++++++++. .|+.+.+
T Consensus 72 ~it~H~lRHT~At~l~~~G~d~~~Iq~~lGH~s~~tT~~Y~~~~~~~~~~~~e~-~~~~~~k 132 (133)
T 1aih_A 72 GQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAVKF-NPLSNPA 132 (133)
T ss_dssp TCTTTHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHGGGGGGSCCCTTHHHHH-STTTSCC
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH-CCCCCCC
T ss_conf 620024688773787744730989999808998899987766799999999985-9565879