HHsearch results for GI: 254780490 and protein with PDBid: 1aih_A

>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1

Probab=99.58  E-value=3e-16  Score=103.32  Aligned_cols=60  Identities=30%  Similarity=0.577  Sum_probs=56.1

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCHHHHH
Q ss_conf             2160363899999999808999999998488888999999863999999999995821133
Q gi|254780490|r    2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ   62 (67)
Q Consensus         2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~~~~~~~~~~~p~~~~   62 (67)
                      .++||+|||||||.++++|+|+..||.+|||+++.+|++|++++.+++++++ +++|..+.
T Consensus       109 ~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~s~~~t~~Y~~~~~~~~~~~~-~~~p~~~~  168 (170)
T 1aih_A          109 GQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAV-KFNPLSNP  168 (170)
T ss_dssp             TCTTTHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHGGGGGGSCCCTTHHH-HHSTTTSC
T ss_pred             CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH-HHCCCCCC
T ss_conf             6321301648999999869979999998389989999998877999999999-85867688